Wall clock time and date at job start Mon Mar 30 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46748 * 300.00117 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 H 1.08992 * 109.48004 * 304.99724 * 17 16 15 19 19 C 1.53090 * 109.48093 * 184.97210 * 17 16 15 20 20 C 1.53179 * 109.16247 * 182.41784 * 19 17 16 21 21 C 1.53180 * 109.04286 * 56.96759 * 20 19 17 22 22 C 1.53084 * 109.16462 * 303.02608 * 21 20 19 23 23 O 1.42902 * 109.47980 * 65.02399 * 17 16 15 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 28 28 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 29 29 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 30 30 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 31 31 H 1.08998 * 109.52406 * 302.31586 * 19 17 16 32 32 H 1.09001 * 109.52103 * 62.50367 * 19 17 16 33 33 H 1.09000 * 109.53314 * 297.09967 * 20 19 17 34 34 H 1.09001 * 109.61561 * 176.88069 * 20 19 17 35 35 H 1.09001 * 109.52041 * 183.11966 * 21 20 19 36 36 H 1.09000 * 109.57070 * 62.96412 * 21 20 19 37 37 H 1.09004 * 109.48185 * 297.63031 * 22 21 20 38 38 H 1.08993 * 109.48553 * 177.59290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 6 2.1925 -8.4427 -0.0049 17 6 1.4275 -9.7677 -0.0089 18 1 0.7363 -9.7909 0.8335 19 6 2.4176 -10.9292 0.1109 20 6 1.6498 -12.2531 0.0454 21 6 0.8500 -12.3030 -1.2601 22 6 -0.0794 -11.0884 -1.3268 23 8 0.6953 -9.8915 -1.2298 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3877 0.0023 26 1 2.9009 -6.0110 0.0038 27 1 0.5724 -7.3409 0.8907 28 1 0.5710 -7.3340 -0.8892 29 1 2.8185 -8.3814 -0.8952 30 1 2.8200 -8.3885 0.8848 31 1 3.1343 -10.8830 -0.7090 32 1 2.9458 -10.8610 1.0619 33 1 0.9684 -12.3215 0.8934 34 1 2.3528 -13.0856 0.0743 35 1 0.2573 -13.2173 -1.2894 36 1 1.5343 -12.2850 -2.1084 37 1 -0.7904 -11.1290 -0.5015 38 1 -0.6200 -11.0958 -2.2731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223629173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:19 Heat of formation + Delta-G solvation = -140.585380 kcal Electronic energy + Delta-G solvation = -20206.574879 eV Core-core repulsion = 16855.204476 eV Total energy + Delta-G solvation = -3351.370403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.80222 -39.29903 -37.20574 -35.27509 -34.17682 -33.88726 -32.54942 -31.35215 -29.13281 -26.08695 -25.13414 -23.92758 -22.38765 -21.45574 -20.51114 -19.33938 -18.28890 -16.90969 -16.72863 -16.36379 -15.69500 -15.08694 -15.04570 -14.84427 -14.68440 -14.24351 -13.93679 -13.81101 -13.71308 -12.98207 -12.74757 -12.52509 -12.35530 -11.89216 -11.74971 -11.52056 -11.38669 -11.21688 -11.14913 -11.00525 -10.55803 -10.46841 -10.38704 -10.28934 -9.70653 -9.65213 -8.66659 -8.23397 -8.19651 -6.64356 -3.96648 2.49963 3.16026 3.17922 3.24661 3.43646 3.57558 4.08268 4.32627 4.42512 4.48355 4.54687 4.63273 4.89290 4.95179 5.07755 5.11420 5.20830 5.22678 5.26245 5.38321 5.45296 5.49044 5.63112 5.64115 5.70829 5.81396 5.93732 6.05325 6.08214 6.19432 6.84297 7.04152 7.33813 7.73367 7.92757 8.36643 8.67688 8.99484 9.35306 9.88347 10.50748 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.058468 B = 0.002870 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.776634 B = 9753.422865 C =10070.735924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.500 5.500 10 C 0.395 3.605 11 O -0.598 6.598 12 C 0.512 3.488 13 O -0.546 6.546 14 N -0.716 5.716 15 C 0.123 3.877 16 C -0.124 4.124 17 C 0.094 3.906 18 H 0.062 0.938 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.157 4.157 22 C 0.060 3.940 23 O -0.375 6.375 24 H 0.280 0.720 25 H 0.405 0.595 26 H 0.409 0.591 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -21.617 0.068 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.177 4.177 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.436 4.436 8 H 0.131 0.869 9 N -0.135 5.135 10 C 0.180 3.820 11 O -0.487 6.487 12 C 0.297 3.703 13 O -0.423 6.423 14 N -0.370 5.370 15 C -0.001 4.001 16 C -0.162 4.162 17 C 0.036 3.964 18 H 0.080 0.920 19 C -0.188 4.188 20 C -0.160 4.160 21 C -0.195 4.195 22 C -0.017 4.017 23 O -0.294 6.294 24 H 0.090 0.910 25 H 0.240 0.760 26 H 0.244 0.756 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.151 -21.329 -0.072 21.360 hybrid contribution 0.168 0.436 0.198 0.507 sum 1.319 -20.893 0.125 20.935 Atomic orbital electron populations 1.69494 1.06518 1.29211 1.45536 1.25592 0.95632 1.00471 0.95987 0.85668 0.79863 0.80038 0.78040 1.18725 1.20302 1.20310 1.19929 0.93985 0.81887 1.47785 0.86944 1.41574 1.10508 1.04242 1.57142 1.18985 0.87808 0.84263 0.90979 1.90574 1.12914 1.86682 1.58528 1.20665 0.87506 0.85914 0.76254 1.90689 1.14078 1.88136 1.49445 1.45667 1.11064 1.04794 1.75476 1.21257 0.94471 0.81698 1.02671 1.21832 0.98260 0.92286 1.03818 1.22021 0.92828 0.94111 0.87432 0.92048 1.22209 0.98780 0.94727 1.03090 1.21588 0.99226 0.97582 0.97646 1.22202 0.99675 0.98968 0.98658 1.22554 0.92714 0.84227 1.02167 1.87992 1.62660 1.40256 1.38480 0.90996 0.75987 0.75564 0.91875 0.90773 0.90133 0.89696 0.90832 0.90706 0.91831 0.91507 0.91043 0.91036 0.93217 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.62 13.03 55.53 0.72 -22.90 16 2 C 0.03 0.79 5.51 -17.40 -0.10 0.69 16 3 Si 0.94 20.29 29.56 -169.99 -5.02 15.26 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.31 -8.53 9.67 -15.14 -0.15 -8.68 16 8 H 0.11 3.21 7.15 -52.49 -0.38 2.83 16 9 N -0.50 -13.66 5.25 -11.59 -0.06 -13.72 16 10 C 0.40 10.18 7.82 -11.88 -0.09 10.09 16 11 O -0.60 -16.27 16.03 5.36 0.09 -16.18 16 12 C 0.51 11.52 7.87 -11.88 -0.09 11.42 16 13 O -0.55 -13.30 16.47 5.42 0.09 -13.21 16 14 N -0.72 -12.63 5.55 -60.93 -0.34 -12.97 16 15 C 0.12 1.78 5.57 -4.04 -0.02 1.75 16 16 C -0.12 -1.32 5.04 -26.73 -0.13 -1.45 16 17 C 0.09 0.91 2.64 -26.68 -0.07 0.84 16 18 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 19 C -0.15 -1.16 5.42 -26.59 -0.14 -1.31 16 20 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 21 C -0.16 -1.10 6.14 -26.59 -0.16 -1.26 16 22 C 0.06 0.51 6.84 37.20 0.25 0.76 16 23 O -0.37 -4.26 9.94 -35.23 -0.35 -4.62 16 24 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 25 H 0.40 11.14 7.35 -40.82 -0.30 10.84 16 26 H 0.41 6.68 7.93 -40.82 -0.32 6.36 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -31.85 321.94 -6.50 -38.35 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.61 Total: 13.25 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -0.87 Total: 11.88 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.32 Total: -49.59 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.18 Total: -34.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.85 -6.50 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223629173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.235 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds