Wall clock time and date at job start Mon Mar 30 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47341 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46748 * 300.00117 * 3 2 1 6 6 H 1.48498 * 109.47206 * 59.99794 * 3 2 1 7 7 C 1.39592 * 119.99647 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99508 * 180.02562 * 7 2 1 9 9 N 1.36121 * 120.00132 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00046 * 179.97438 * 10 9 7 13 13 O 1.21443 * 119.99630 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00046 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99828 * 180.27751 * 14 12 10 16 16 C 1.52996 * 109.47059 * 179.72339 * 15 14 12 17 17 C 1.53003 * 109.47301 * 179.97438 * 16 15 14 18 18 H 1.08992 * 109.48004 * 304.99724 * 17 16 15 19 19 C 1.53090 * 109.48093 * 184.97210 * 17 16 15 20 20 C 1.53179 * 109.16247 * 182.41784 * 19 17 16 21 21 C 1.53180 * 109.04286 * 56.96759 * 20 19 17 22 22 C 1.53084 * 109.16462 * 303.02608 * 21 20 19 23 23 O 1.42902 * 109.47980 * 65.02399 * 17 16 15 24 24 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99759 * 359.97438 * 9 7 2 26 26 H 0.97001 * 119.99727 * 359.97438 * 14 12 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 15 14 12 28 28 H 1.08994 * 109.47567 * 59.72287 * 15 14 12 29 29 H 1.09004 * 109.47066 * 299.99732 * 16 15 14 30 30 H 1.09000 * 109.47665 * 59.99541 * 16 15 14 31 31 H 1.08998 * 109.52406 * 302.31586 * 19 17 16 32 32 H 1.09001 * 109.52103 * 62.50367 * 19 17 16 33 33 H 1.09000 * 109.53314 * 297.09967 * 20 19 17 34 34 H 1.09001 * 109.61561 * 176.88069 * 20 19 17 35 35 H 1.09001 * 109.52041 * 183.11966 * 21 20 19 36 36 H 1.09000 * 109.57070 * 62.96412 * 21 20 19 37 37 H 1.09004 * 109.48185 * 297.63031 * 22 21 20 38 38 H 1.08993 * 109.48553 * 177.59290 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 3.7042 1.3463 -0.0006 5 1 1.8854 2.3963 -1.2126 6 1 1.8855 2.3964 1.2125 7 6 2.0080 -1.2089 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3274 -2.3878 0.0016 10 6 2.0012 -3.5550 0.0026 11 8 3.2163 -3.5550 0.0022 12 6 1.2571 -4.8438 0.0044 13 8 0.0426 -4.8437 0.0053 14 7 1.9309 -6.0111 0.0049 15 6 1.1984 -7.2797 0.0004 16 6 2.1925 -8.4427 -0.0049 17 6 1.4275 -9.7677 -0.0089 18 1 0.7363 -9.7909 0.8335 19 6 2.4176 -10.9292 0.1109 20 6 1.6498 -12.2531 0.0454 21 6 0.8500 -12.3030 -1.2601 22 6 -0.0794 -11.0884 -1.3268 23 8 0.6953 -9.8915 -1.2298 24 1 -0.4850 0.8400 -0.0004 25 1 0.3574 -2.3877 0.0023 26 1 2.9009 -6.0110 0.0038 27 1 0.5724 -7.3409 0.8907 28 1 0.5710 -7.3340 -0.8892 29 1 2.8185 -8.3814 -0.8952 30 1 2.8200 -8.3885 0.8848 31 1 3.1343 -10.8830 -0.7090 32 1 2.9458 -10.8610 1.0619 33 1 0.9684 -12.3215 0.8934 34 1 2.3528 -13.0856 0.0743 35 1 0.2573 -13.2173 -1.2894 36 1 1.5343 -12.2850 -2.1084 37 1 -0.7904 -11.1290 -0.5015 38 1 -0.6200 -11.0958 -2.2731 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223629173.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:19 Heat of formation + Delta-G solvation = -164.393345 kcal Electronic energy + Delta-G solvation = -20207.607270 eV Core-core repulsion = 16855.204476 eV Total energy + Delta-G solvation = -3352.402794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30148 -40.38682 -39.14058 -36.79156 -36.07845 -34.52675 -33.72547 -33.33723 -30.13476 -27.91216 -26.26951 -24.92544 -23.76407 -22.52871 -21.23970 -21.02519 -20.35341 -18.76101 -17.71305 -17.53282 -17.01957 -16.67530 -16.60580 -16.01452 -15.74952 -15.54145 -15.35770 -15.21572 -14.70419 -14.46343 -14.23446 -13.68387 -13.58125 -13.16436 -12.97616 -12.77860 -12.57225 -12.47250 -12.29901 -12.08689 -12.07660 -11.89970 -11.67731 -11.58909 -11.19472 -10.37628 -10.28320 -10.23293 -10.18232 -8.66142 -6.11131 0.59832 1.41541 1.46385 1.57785 1.82816 2.29896 2.37291 2.85439 3.15263 3.28024 3.65310 3.87924 3.96892 4.01316 4.04265 4.10532 4.27194 4.32609 4.36495 4.53820 4.65120 4.74968 4.88219 4.94294 4.98120 5.07605 5.10929 5.17211 5.23919 5.25404 5.32381 5.42273 5.67998 6.16232 6.34011 6.39942 6.81676 7.02424 7.27745 7.79450 8.50121 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.058468 B = 0.002870 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.776634 B = 9753.422865 C =10070.735924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.006 4.006 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.345 4.345 8 H 0.100 0.900 9 N -0.512 5.512 10 C 0.390 3.610 11 O -0.616 6.616 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.693 5.693 15 C 0.122 3.878 16 C -0.115 4.115 17 C 0.092 3.908 18 H 0.065 0.935 19 C -0.147 4.147 20 C -0.123 4.123 21 C -0.154 4.154 22 C 0.052 3.948 23 O -0.403 6.403 24 H 0.289 0.711 25 H 0.400 0.600 26 H 0.417 0.583 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -22.493 0.480 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.210 4.210 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.474 4.474 8 H 0.117 0.883 9 N -0.146 5.146 10 C 0.175 3.825 11 O -0.506 6.506 12 C 0.299 3.701 13 O -0.448 6.448 14 N -0.346 5.346 15 C 0.000 4.000 16 C -0.153 4.153 17 C 0.034 3.966 18 H 0.083 0.917 19 C -0.184 4.184 20 C -0.161 4.161 21 C -0.192 4.192 22 C -0.024 4.024 23 O -0.323 6.323 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.254 0.746 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.844 -22.253 0.339 22.332 hybrid contribution -0.077 0.602 0.055 0.609 sum 1.767 -21.651 0.394 21.727 Atomic orbital electron populations 1.69559 1.07879 1.30781 1.45235 1.26578 0.96522 1.03562 0.94384 0.84620 0.78272 0.75149 0.78732 1.18689 1.19085 1.19011 1.20031 0.93700 0.83029 1.50671 0.88255 1.41675 1.10253 1.04844 1.57780 1.19596 0.87859 0.85204 0.89802 1.90540 1.13730 1.87288 1.59018 1.20115 0.87023 0.86078 0.76897 1.90679 1.14714 1.88369 1.51052 1.45643 1.11564 1.04522 1.72858 1.21466 0.95303 0.81212 1.02056 1.21820 0.97488 0.91063 1.04899 1.22088 0.93260 0.94167 0.87097 0.91674 1.22180 0.98269 0.94329 1.03666 1.21615 0.99460 0.97378 0.97604 1.22176 0.99485 0.98841 0.98653 1.22733 0.93005 0.84031 1.02631 1.87949 1.63298 1.41783 1.39310 0.90086 0.76502 0.74569 0.91607 0.92235 0.90102 0.87563 0.91279 0.89295 0.91306 0.90300 0.89424 0.91645 0.92718 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.85 13.03 21.77 0.28 -48.56 16 2 C -0.01 -0.34 5.51 85.14 0.47 0.13 16 3 Si 1.01 41.12 29.56 68.60 2.03 43.14 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.34 -19.65 9.67 84.35 0.82 -18.84 16 8 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 9 N -0.51 -28.69 5.25 -308.87 -1.62 -30.31 16 10 C 0.39 20.48 7.82 87.08 0.68 21.16 16 11 O -0.62 -33.90 16.03 -3.73 -0.06 -33.96 16 12 C 0.52 23.35 7.87 87.08 0.69 24.04 16 13 O -0.57 -28.01 16.47 -3.54 -0.06 -28.07 16 14 N -0.69 -23.99 5.55 -465.02 -2.58 -26.57 16 15 C 0.12 3.43 5.57 86.38 0.48 3.91 16 16 C -0.12 -2.24 5.04 30.59 0.15 -2.08 16 17 C 0.09 1.63 2.64 30.63 0.08 1.71 16 18 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 19 C -0.15 -1.94 5.42 30.68 0.17 -1.77 16 20 C -0.12 -1.38 6.03 30.71 0.19 -1.19 16 21 C -0.15 -1.86 6.14 30.68 0.19 -1.68 16 22 C 0.05 0.83 6.84 72.01 0.49 1.32 16 23 O -0.40 -8.84 9.94 -148.98 -1.48 -10.32 16 24 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 25 H 0.40 22.74 7.35 -92.71 -0.68 22.06 16 26 H 0.42 13.18 7.93 -92.71 -0.74 12.44 16 27 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.06 1.89 7.82 -2.39 -0.02 1.87 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -68.66 321.94 0.57 -68.08 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.34 Total: 39.84 kcal Atomic # 6 Polarization: 22.31 SS G_CDS: 4.40 Total: 26.71 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: -3.92 Total: -105.44 kcal Atomic # 8 Polarization: -70.74 SS G_CDS: -1.60 Total: -72.34 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -68.66 0.57 -68.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223629173.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.309 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds