Wall clock time and date at job start Mon Mar 30 2020 05:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46919 * 2 1 4 4 C 1.53008 * 110.65888 * 305.03842 * 3 2 1 5 5 C 1.51585 * 110.50779 * 68.00495 * 3 2 1 6 6 O 1.21232 * 127.15847 * 298.56147 * 5 3 2 7 7 N 1.34770 * 105.68530 * 118.81742 * 5 3 2 8 8 C 1.33794 * 111.64412 * 359.77790 * 7 5 3 9 9 O 1.21533 * 123.76967 * 179.97438 * 8 7 5 10 10 N 1.34530 * 112.45371 * 0.02562 * 8 7 5 11 11 C 1.46500 * 126.68445 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47395 * 274.48574 * 11 10 8 13 13 O 1.42903 * 109.46990 * 65.49360 * 12 11 10 14 14 C 1.42899 * 114.00253 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47305 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99786 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99774 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47442 * 89.99937 * 19 17 15 21 21 H 1.48501 * 109.47140 * 209.99807 * 19 17 15 22 22 H 1.48498 * 109.47341 * 329.99675 * 19 17 15 23 23 H 1.09006 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47108 * 299.99477 * 1 2 3 25 25 H 1.08994 * 109.47021 * 59.99898 * 1 2 3 26 26 H 1.09001 * 109.46539 * 240.00370 * 2 1 3 27 27 H 1.08994 * 109.47021 * 120.00102 * 2 1 3 28 28 H 1.08995 * 109.46827 * 297.08630 * 4 3 2 29 29 H 1.09000 * 109.46640 * 57.08466 * 4 3 2 30 30 H 1.09001 * 109.47400 * 177.08640 * 4 3 2 31 31 H 0.96998 * 124.17579 * 179.82004 * 7 5 3 32 32 H 1.08999 * 109.47336 * 154.49073 * 11 10 8 33 33 H 1.08995 * 109.47669 * 34.48426 * 11 10 8 34 34 H 1.09004 * 109.47183 * 305.50081 * 12 11 10 35 35 H 1.08997 * 109.47674 * 185.49737 * 12 11 10 36 36 H 1.08994 * 109.47256 * 300.00812 * 14 13 12 37 37 H 1.08999 * 109.46769 * 60.00356 * 14 13 12 38 38 H 0.97007 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4449 2.2254 -1.1722 5 6 1.7156 2.1204 1.3164 6 8 0.6158 2.3224 1.7846 7 7 2.9041 2.4569 1.8555 8 6 3.9238 2.0854 1.0730 9 8 5.0916 2.2810 1.3469 10 7 3.5119 1.4722 -0.0513 11 6 4.3613 0.9421 -1.1207 12 6 4.6946 2.0611 -2.1095 13 8 5.4959 3.0491 -1.4584 14 6 5.8652 4.1443 -2.2988 15 6 6.7041 5.1193 -1.5137 16 1 6.9322 4.9226 -0.4766 17 6 7.1797 6.2631 -2.1192 18 7 7.9114 7.1143 -1.4340 19 14 6.7834 6.6044 -3.9125 20 1 5.5206 7.3807 -4.0014 21 1 7.8886 7.3855 -4.5238 22 1 6.6259 5.3184 -4.6381 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.7747 1.7803 -2.1110 29 1 0.3569 2.1917 -1.1165 30 1 1.7794 3.2617 -1.1242 31 1 3.0074 2.9117 2.7060 32 1 3.8340 0.1427 -1.6411 33 1 5.2834 0.5500 -0.6917 34 1 3.7713 2.5188 -2.4649 35 1 5.2439 1.6473 -2.9551 36 1 6.4389 3.7733 -3.1480 37 1 4.9664 4.6452 -2.6585 38 1 8.2457 7.9192 -1.8598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385387922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:20 Heat of formation + Delta-G solvation = -88.798908 kcal Electronic energy + Delta-G solvation = -21812.716336 eV Core-core repulsion = 18463.591563 eV Total energy + Delta-G solvation = -3349.124773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.41886 -38.61918 -37.28460 -36.53414 -34.98163 -33.53279 -32.51139 -30.03023 -29.14855 -27.55438 -25.41996 -23.62393 -23.23064 -21.82359 -20.70922 -20.22499 -18.06607 -16.87574 -16.67893 -16.42998 -15.86597 -15.69368 -15.36689 -14.97534 -14.62277 -14.30336 -14.10928 -13.76931 -13.45505 -13.08977 -12.81114 -12.58062 -12.43588 -12.23631 -12.09149 -11.92171 -11.53507 -11.21500 -11.04586 -10.83733 -10.72646 -10.53702 -10.17094 -9.91228 -9.84995 -9.14775 -8.87557 -8.80583 -8.45998 -6.07907 -4.06501 1.65476 2.34382 3.02323 3.24241 3.29767 3.31135 3.32084 3.92621 4.30347 4.36673 4.48878 4.53091 4.91861 4.99844 5.08867 5.22216 5.23251 5.34729 5.41206 5.49667 5.54332 5.64133 5.67836 5.74555 5.84288 5.90490 6.02744 6.08708 6.14596 6.56362 6.60063 6.98968 7.23519 7.42444 7.61882 8.02929 8.39099 8.69320 9.08001 9.51142 11.05383 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.005063 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.037543 B = 5529.051530 C = 5763.627295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C 0.119 3.881 4 C -0.149 4.149 5 C 0.535 3.465 6 O -0.476 6.476 7 N -0.680 5.680 8 C 0.699 3.301 9 O -0.507 6.507 10 N -0.612 5.612 11 C 0.157 3.843 12 C 0.032 3.968 13 O -0.363 6.363 14 C 0.170 3.830 15 C -0.515 4.515 16 H 0.084 0.916 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.267 1.267 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.430 0.570 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.052 0.948 36 H 0.002 0.998 37 H -0.006 1.006 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.643 -16.016 -0.307 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C 0.030 3.970 4 C -0.207 4.207 5 C 0.321 3.679 6 O -0.346 6.346 7 N -0.351 5.351 8 C 0.399 3.601 9 O -0.376 6.376 10 N -0.352 5.352 11 C 0.036 3.964 12 C -0.047 4.047 13 O -0.282 6.282 14 C 0.095 3.905 15 C -0.553 4.553 16 H 0.102 0.898 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.272 0.728 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.012 0.988 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.307 -15.728 0.082 21.947 hybrid contribution -0.114 0.721 -0.906 1.163 sum -15.421 -15.007 -0.825 21.533 Atomic orbital electron populations 1.21939 0.93878 1.02346 1.03666 1.21661 0.97356 0.92379 1.03686 1.21506 0.82341 0.98054 0.95112 1.22096 1.01810 1.00697 0.96139 1.20717 0.83906 0.77097 0.86193 1.90769 1.23263 1.53345 1.67254 1.44414 1.08351 1.57470 1.24817 1.15823 0.84580 0.78898 0.80801 1.91109 1.15069 1.57144 1.74254 1.47616 1.04885 1.61807 1.20866 1.21398 0.94042 0.94593 0.86368 1.22907 0.95358 0.91570 0.94897 1.88093 1.69300 1.32904 1.37909 1.20580 0.93867 0.84963 0.91127 1.20907 1.30810 1.03309 1.00249 0.89798 1.24773 0.94800 0.95599 0.97825 1.69885 1.35295 1.11628 1.36594 0.86870 0.78461 0.78788 0.85697 1.20065 1.20780 1.19185 0.92097 0.90975 0.91770 0.89914 0.91043 0.90327 0.89854 0.91115 0.72842 0.88781 0.88637 0.93978 0.93024 0.98069 0.98830 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.27 37.16 0.34 -0.83 16 2 C -0.11 -0.90 5.24 -26.73 -0.14 -1.04 16 3 C 0.12 1.30 0.86 -132.10 -0.11 1.18 16 4 C -0.15 -1.49 7.70 37.16 0.29 -1.20 16 5 C 0.54 6.83 7.30 -10.55 -0.08 6.76 16 6 O -0.48 -6.66 16.25 5.60 0.09 -6.57 16 7 N -0.68 -9.34 5.70 -15.79 -0.09 -9.43 16 8 C 0.70 11.69 8.36 -88.01 -0.74 10.96 16 9 O -0.51 -10.96 17.31 5.18 0.09 -10.87 16 10 N -0.61 -8.28 2.44 -165.09 -0.40 -8.68 16 11 C 0.16 1.95 6.19 -4.04 -0.02 1.92 16 12 C 0.03 0.50 6.26 37.16 0.23 0.74 16 13 O -0.36 -8.43 9.50 -35.39 -0.34 -8.76 16 14 C 0.17 4.35 4.76 36.00 0.17 4.52 16 15 C -0.51 -15.74 9.99 -34.44 -0.34 -16.08 16 16 H 0.08 2.88 8.06 -52.49 -0.42 2.46 16 17 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 18 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.66 6.26 -51.93 -0.33 0.33 16 25 H 0.06 0.42 6.38 -51.93 -0.33 0.09 16 26 H 0.08 0.52 7.36 -51.93 -0.38 0.14 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.66 7.45 -51.93 -0.39 0.27 16 29 H 0.08 0.70 6.30 -51.93 -0.33 0.37 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.43 5.13 8.96 -40.82 -0.37 4.76 16 32 H 0.09 0.73 7.32 -51.93 -0.38 0.35 16 33 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 34 H 0.04 0.62 6.69 -51.93 -0.35 0.27 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 37 H -0.01 -0.15 7.57 -51.93 -0.39 -0.54 16 38 H 0.27 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -36.75 313.31 -5.63 -42.38 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -5.31 Total: -1.23 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.50 Total: 8.98 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: 0.28 Total: -45.59 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.16 Total: -26.20 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.75 -5.63 -42.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385387922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.415 kcal (2) G-P(sol) polarization free energy of solvation -36.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds