Wall clock time and date at job start Mon Mar 30 2020 05:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46919 * 2 1 4 4 C 1.53008 * 110.65888 * 305.03842 * 3 2 1 5 5 C 1.51585 * 110.50779 * 68.00495 * 3 2 1 6 6 O 1.21232 * 127.15847 * 298.56147 * 5 3 2 7 7 N 1.34770 * 105.68530 * 118.81742 * 5 3 2 8 8 C 1.33794 * 111.64412 * 359.77790 * 7 5 3 9 9 O 1.21533 * 123.76967 * 179.97438 * 8 7 5 10 10 N 1.34530 * 112.45371 * 0.02562 * 8 7 5 11 11 C 1.46500 * 126.68445 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47395 * 274.48574 * 11 10 8 13 13 O 1.42903 * 109.46990 * 65.49360 * 12 11 10 14 14 C 1.42899 * 114.00253 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47305 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00039 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99786 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99774 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47442 * 89.99937 * 19 17 15 21 21 H 1.48501 * 109.47140 * 209.99807 * 19 17 15 22 22 H 1.48498 * 109.47341 * 329.99675 * 19 17 15 23 23 H 1.09006 * 109.47096 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47108 * 299.99477 * 1 2 3 25 25 H 1.08994 * 109.47021 * 59.99898 * 1 2 3 26 26 H 1.09001 * 109.46539 * 240.00370 * 2 1 3 27 27 H 1.08994 * 109.47021 * 120.00102 * 2 1 3 28 28 H 1.08995 * 109.46827 * 297.08630 * 4 3 2 29 29 H 1.09000 * 109.46640 * 57.08466 * 4 3 2 30 30 H 1.09001 * 109.47400 * 177.08640 * 4 3 2 31 31 H 0.96998 * 124.17579 * 179.82004 * 7 5 3 32 32 H 1.08999 * 109.47336 * 154.49073 * 11 10 8 33 33 H 1.08995 * 109.47669 * 34.48426 * 11 10 8 34 34 H 1.09004 * 109.47183 * 305.50081 * 12 11 10 35 35 H 1.08997 * 109.47674 * 185.49737 * 12 11 10 36 36 H 1.08994 * 109.47256 * 300.00812 * 14 13 12 37 37 H 1.08999 * 109.46769 * 60.00356 * 14 13 12 38 38 H 0.97007 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4449 2.2254 -1.1722 5 6 1.7156 2.1204 1.3164 6 8 0.6158 2.3224 1.7846 7 7 2.9041 2.4569 1.8555 8 6 3.9238 2.0854 1.0730 9 8 5.0916 2.2810 1.3469 10 7 3.5119 1.4722 -0.0513 11 6 4.3613 0.9421 -1.1207 12 6 4.6946 2.0611 -2.1095 13 8 5.4959 3.0491 -1.4584 14 6 5.8652 4.1443 -2.2988 15 6 6.7041 5.1193 -1.5137 16 1 6.9322 4.9226 -0.4766 17 6 7.1797 6.2631 -2.1192 18 7 7.9114 7.1143 -1.4340 19 14 6.7834 6.6044 -3.9125 20 1 5.5206 7.3807 -4.0014 21 1 7.8886 7.3855 -4.5238 22 1 6.6259 5.3184 -4.6381 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.7747 1.7803 -2.1110 29 1 0.3569 2.1917 -1.1165 30 1 1.7794 3.2617 -1.1242 31 1 3.0074 2.9117 2.7060 32 1 3.8340 0.1427 -1.6411 33 1 5.2834 0.5500 -0.6917 34 1 3.7713 2.5188 -2.4649 35 1 5.2439 1.6473 -2.9551 36 1 6.4389 3.7733 -3.1480 37 1 4.9664 4.6452 -2.6585 38 1 8.2457 7.9192 -1.8598 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385387922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:19 Heat of formation + Delta-G solvation = -118.336223 kcal Electronic energy + Delta-G solvation = -21813.997170 eV Core-core repulsion = 18463.591563 eV Total energy + Delta-G solvation = -3350.405607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.51623 -39.81584 -38.75742 -37.79306 -36.16391 -34.99285 -34.28975 -31.22887 -30.19173 -29.37225 -26.29326 -24.77238 -24.22695 -23.90712 -21.84987 -21.15918 -19.23239 -18.99647 -17.81350 -17.63419 -17.29865 -16.80956 -16.73923 -16.43484 -15.92176 -15.74007 -15.48075 -14.82868 -14.68612 -14.35673 -14.21472 -13.85345 -13.45513 -13.25856 -12.99384 -12.85557 -12.80872 -12.67366 -12.60394 -12.21929 -11.84313 -11.82232 -11.75123 -11.42287 -11.33070 -10.99431 -10.91941 -10.29202 -9.95151 -8.37524 -6.45889 0.56796 1.25800 1.30774 1.35613 1.46487 2.02990 2.05273 2.28628 2.92767 2.94725 3.14892 3.53513 3.70357 3.98192 4.22148 4.34655 4.35921 4.43724 4.52314 4.58727 4.61350 4.63456 4.78337 4.92271 4.96184 5.01135 5.02225 5.05854 5.12782 5.26167 5.44394 5.46945 5.54411 5.95234 6.08219 6.36481 6.59923 6.81467 7.15076 7.19073 8.80723 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026284 B = 0.005063 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.037543 B = 5529.051530 C = 5763.627295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.532 3.468 6 O -0.488 6.488 7 N -0.681 5.681 8 C 0.691 3.309 9 O -0.570 6.570 10 N -0.604 5.604 11 C 0.156 3.844 12 C 0.018 3.982 13 O -0.399 6.399 14 C 0.183 3.817 15 C -0.544 4.544 16 H 0.017 0.983 17 C 0.008 3.992 18 N -0.947 5.947 19 Si 0.963 3.037 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.239 1.239 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.432 0.568 32 H 0.158 0.842 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.015 0.985 37 H 0.007 0.993 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.022 -17.938 -3.949 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C 0.034 3.966 4 C -0.206 4.206 5 C 0.319 3.681 6 O -0.359 6.359 7 N -0.351 5.351 8 C 0.392 3.608 9 O -0.445 6.445 10 N -0.343 5.343 11 C 0.036 3.964 12 C -0.060 4.060 13 O -0.319 6.319 14 C 0.107 3.893 15 C -0.582 4.582 16 H 0.035 0.965 17 C -0.189 4.189 18 N -0.587 5.587 19 Si 0.783 3.217 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.162 1.162 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.274 0.726 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.025 0.975 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.750 -17.695 -3.563 25.315 hybrid contribution 0.589 1.276 0.373 1.454 sum -17.161 -16.419 -3.190 23.964 Atomic orbital electron populations 1.21924 0.93128 1.03378 1.03111 1.21727 0.97806 0.89824 1.05090 1.21804 0.80537 1.00181 0.94065 1.22156 1.02929 0.98970 0.96559 1.21165 0.83203 0.76768 0.86941 1.90766 1.23427 1.53863 1.67866 1.44422 1.08451 1.57302 1.24899 1.16159 0.84065 0.78768 0.81838 1.91066 1.17667 1.59864 1.75880 1.47799 1.06362 1.60359 1.19775 1.21683 0.94479 0.94644 0.85626 1.23393 0.95348 0.90871 0.96394 1.88061 1.70915 1.33680 1.39208 1.20235 0.93458 0.85070 0.90521 1.21190 1.32959 1.05928 0.98135 0.96490 1.25964 0.93866 0.94625 1.04477 1.70072 1.36498 1.12454 1.39670 0.85514 0.78826 0.79940 0.77411 1.18465 1.19887 1.16203 0.90306 0.93281 0.90561 0.86745 0.91422 0.87654 0.88008 0.93897 0.72583 0.82497 0.90185 0.92206 0.90553 0.96698 0.97500 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.27 71.98 0.67 -1.06 16 2 C -0.11 -1.28 5.24 30.59 0.16 -1.12 16 3 C 0.12 2.37 0.86 2.99 0.00 2.37 16 4 C -0.15 -2.46 7.70 71.98 0.55 -1.91 16 5 C 0.53 13.35 7.30 87.94 0.64 13.99 16 6 O -0.49 -13.44 16.25 -2.88 -0.05 -13.48 16 7 N -0.68 -19.47 5.70 -441.12 -2.52 -21.99 16 8 C 0.69 23.95 8.36 179.44 1.50 25.45 16 9 O -0.57 -26.46 17.31 -3.67 -0.06 -26.52 16 10 N -0.60 -15.49 2.44 -794.66 -1.94 -17.43 16 11 C 0.16 3.42 6.19 86.38 0.53 3.95 16 12 C 0.02 0.51 6.26 71.98 0.45 0.96 16 13 O -0.40 -18.60 9.50 -148.83 -1.41 -20.02 16 14 C 0.18 9.28 4.76 71.23 0.34 9.62 16 15 C -0.54 -34.72 9.99 25.60 0.26 -34.46 16 16 H 0.02 1.25 8.06 -2.91 -0.02 1.23 16 17 C 0.01 0.48 5.47 84.66 0.46 0.94 16 18 N -0.95 -61.95 13.96 21.45 0.30 -61.65 16 19 Si 0.96 43.92 27.47 68.60 1.88 45.80 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 23 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.05 0.79 6.26 -2.39 -0.01 0.77 16 25 H 0.08 0.66 6.38 -2.39 -0.02 0.64 16 26 H 0.11 0.72 7.36 -2.39 -0.02 0.70 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.20 7.45 -2.39 -0.02 1.19 16 29 H 0.10 1.34 6.30 -2.39 -0.02 1.32 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.43 11.21 8.96 -92.71 -0.83 10.37 16 32 H 0.16 1.48 7.32 -2.39 -0.02 1.47 16 33 H 0.08 2.06 8.11 -2.39 -0.02 2.04 16 34 H 0.06 1.53 6.69 -2.38 -0.02 1.51 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 37 H 0.01 0.35 7.57 -2.39 -0.02 0.33 16 38 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -87.43 313.31 1.97 -85.46 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.19 Total: 11.09 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.57 Total: 18.73 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -4.15 Total: -101.06 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -1.52 Total: -60.02 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -87.43 1.97 -85.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385387922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.872 kcal (2) G-P(sol) polarization free energy of solvation -87.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds