Wall clock time and date at job start Mon Mar 30 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45963 * 2 1 4 4 C 1.53033 * 109.46158 * 119.97419 * 2 1 3 5 5 C 1.53119 * 109.27815 * 60.82968 * 4 2 1 6 6 C 1.53124 * 109.16080 * 57.65410 * 5 4 2 7 7 H 1.09000 * 109.50457 * 62.32615 * 6 5 4 8 8 C 1.50697 * 109.50602 * 182.40600 * 6 5 4 9 9 O 1.20822 * 120.00128 * 119.99826 * 8 6 5 10 10 O 1.34230 * 119.99888 * 300.27525 * 8 6 5 11 11 C 1.53035 * 109.27454 * 302.34360 * 6 5 4 12 12 N 1.46839 * 109.45590 * 240.02503 * 2 1 3 13 13 C 1.46906 * 111.00052 * 65.82825 * 12 2 1 14 14 C 1.50698 * 109.47029 * 66.36142 * 13 12 2 15 15 O 1.21288 * 120.00177 * 6.17196 * 14 13 12 16 16 N 1.34776 * 119.99818 * 186.17149 * 14 13 12 17 17 C 1.37103 * 120.00116 * 179.97438 * 16 14 13 18 18 H 1.07993 * 119.99785 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99880 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99837 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00211 * 0.02562 * 19 17 16 22 22 H 1.48490 * 109.47257 * 89.99726 * 21 19 17 23 23 H 1.48501 * 109.46913 * 209.99879 * 21 19 17 24 24 H 1.48502 * 109.46873 * 329.99223 * 21 19 17 25 25 H 1.08993 * 109.47792 * 300.01791 * 1 2 3 26 26 H 1.08998 * 109.47368 * 60.02310 * 1 2 3 27 27 H 1.09005 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.50762 * 300.88872 * 4 2 1 29 29 H 1.09007 * 109.50130 * 180.76959 * 4 2 1 30 30 H 1.08999 * 109.52668 * 297.74883 * 5 4 2 31 31 H 1.09003 * 109.57500 * 177.58450 * 5 4 2 32 32 H 0.96701 * 117.00406 * 179.72342 * 10 8 6 33 33 H 1.09000 * 109.46324 * 179.19017 * 11 6 5 34 34 H 1.08994 * 109.46540 * 299.16302 * 11 6 5 35 35 H 1.09004 * 109.47090 * 186.36579 * 13 12 2 36 36 H 1.09005 * 109.46710 * 306.35955 * 13 12 2 37 37 H 0.97001 * 120.00195 * 0.02562 * 16 14 13 38 38 H 0.96990 * 120.00110 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5441 -2.1695 1.2356 6 6 2.0266 -2.8532 -0.0468 7 1 3.1163 -2.8758 -0.0592 8 6 1.4935 -4.2618 -0.0972 9 8 0.7821 -4.6062 -1.0110 10 8 1.8046 -5.1324 0.8761 11 6 1.5170 -2.0705 -1.2590 12 7 2.0191 -0.6917 -1.1993 13 6 1.6649 0.0506 -2.4165 14 6 2.4075 1.3618 -2.4392 15 8 3.2408 1.6015 -1.5910 16 7 2.1458 2.2679 -3.4019 17 6 2.8209 3.4610 -3.4222 18 1 3.5628 3.6745 -2.6670 19 6 2.5514 4.3950 -4.4151 20 7 3.1982 5.5387 -4.4342 21 14 1.2686 4.0254 -5.7217 22 1 -0.0599 4.5012 -5.2597 23 1 1.6322 4.7201 -6.9828 24 1 1.2141 2.5608 -5.9615 25 1 -0.3634 0.5141 0.8897 26 1 -0.3634 0.5135 -0.8902 27 1 -0.3634 -1.0277 0.0005 28 1 1.6638 -0.2164 2.1399 29 1 3.1299 -0.7093 1.2575 30 1 0.4546 -2.1821 1.2673 31 1 1.9399 -2.6995 2.1020 32 1 1.4358 -6.0233 0.8027 33 1 1.8708 -2.5464 -2.1736 34 1 0.4271 -2.0606 -1.2531 35 1 1.9383 -0.5370 -3.2930 36 1 0.5916 0.2407 -2.4268 37 1 1.4791 2.0763 -4.0800 38 1 3.0098 6.1909 -5.1270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397016074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:07 Heat of formation + Delta-G solvation = -120.472698 kcal Electronic energy + Delta-G solvation = -21430.020795 eV Core-core repulsion = 18079.522543 eV Total energy + Delta-G solvation = -3350.498252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86186 -39.43124 -37.81177 -36.33378 -34.11486 -33.41357 -32.06935 -31.61360 -28.16495 -27.14677 -24.62722 -24.22274 -22.75357 -21.30696 -19.37539 -18.76774 -18.31923 -18.00733 -16.84036 -16.09213 -15.86320 -15.59558 -15.41084 -14.86395 -14.11204 -13.82519 -13.68421 -13.38566 -13.27654 -12.99055 -12.84487 -12.51774 -12.34645 -12.03355 -11.85120 -11.74673 -11.59921 -11.19883 -11.11276 -10.86467 -10.66547 -10.58196 -10.38357 -10.16946 -9.96172 -9.50152 -8.54241 -8.16228 -7.93380 -6.29841 -3.81060 2.00245 2.76150 3.04184 3.07881 3.16286 3.76438 3.98535 4.11681 4.46504 4.62512 4.78731 4.81624 5.07973 5.20593 5.23145 5.27661 5.49131 5.49717 5.52777 5.56347 5.60438 5.74101 5.79539 5.86358 5.92704 5.97303 6.09121 6.15066 6.26484 6.34404 6.55235 7.17667 7.31975 7.60131 7.68181 8.16078 8.62070 8.96891 9.44274 9.85536 10.83355 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034745 B = 0.004275 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.682218 B = 6547.707918 C = 6886.914801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.073 3.927 3 H 0.110 0.890 4 C -0.106 4.106 5 C -0.111 4.111 6 C -0.075 4.075 7 H 0.120 0.880 8 C 0.486 3.514 9 O -0.517 6.517 10 O -0.515 6.515 11 C 0.067 3.933 12 N -0.506 5.506 13 C 0.041 3.959 14 C 0.454 3.546 15 O -0.557 6.557 16 N -0.592 5.592 17 C -0.303 4.303 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.882 5.882 21 Si 0.878 3.122 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.407 0.593 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.370 0.630 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.922 -17.737 8.699 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.035 4.035 3 H 0.128 0.872 4 C -0.144 4.144 5 C -0.149 4.149 6 C -0.095 4.095 7 H 0.138 0.862 8 C 0.328 3.672 9 O -0.405 6.405 10 O -0.327 6.327 11 C -0.061 4.061 12 N -0.230 5.230 13 C -0.090 4.090 14 C 0.240 3.760 15 O -0.439 6.439 16 N -0.232 5.232 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.266 0.734 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.202 0.798 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.822 -17.065 8.976 20.142 hybrid contribution -2.162 -0.766 -1.412 2.693 sum -7.984 -17.831 7.565 20.950 Atomic orbital electron populations 1.22549 0.98401 1.01584 1.02454 1.21887 0.91770 1.00596 0.89277 0.87173 1.21557 1.02197 0.93445 0.97172 1.21622 1.01058 0.96915 0.95309 1.21031 1.03584 0.86405 0.98433 0.86224 1.23591 0.77110 0.88134 0.78375 1.90718 1.35626 1.79125 1.35046 1.84554 1.71558 1.26556 1.50010 1.21891 0.98262 0.89297 0.96686 1.61645 1.59312 1.00283 1.01741 1.21917 0.98275 0.95416 0.93411 1.19610 0.86805 0.85206 0.84403 1.90541 1.35623 1.78548 1.39188 1.42226 1.37644 1.16774 1.26563 1.19422 1.19750 0.90372 1.13667 0.86254 1.25026 0.97839 0.95471 0.97789 1.69618 1.41081 1.07048 1.34497 0.86691 0.82103 0.78532 0.82200 1.19688 1.20195 1.19465 0.91981 0.92432 0.92591 0.91016 0.90319 0.91602 0.90587 0.73414 0.90015 0.93568 0.89078 0.92965 0.79759 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 8.19 37.16 0.30 -2.12 16 2 C 0.07 1.07 2.60 -67.73 -0.18 0.90 16 3 H 0.11 2.04 6.05 -51.93 -0.31 1.73 16 4 C -0.11 -1.26 5.61 -26.65 -0.15 -1.41 16 5 C -0.11 -1.11 4.90 -26.61 -0.13 -1.25 16 6 C -0.08 -0.82 2.79 -91.69 -0.26 -1.08 16 7 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 8 C 0.49 5.23 7.63 36.00 0.27 5.50 16 9 O -0.52 -7.04 16.74 -18.75 -0.31 -7.35 16 10 O -0.52 -4.11 13.35 -39.26 -0.52 -4.63 16 11 C 0.07 0.86 3.74 -3.83 -0.01 0.85 16 12 N -0.51 -7.84 4.29 -228.13 -0.98 -8.82 16 13 C 0.04 0.69 5.29 -4.97 -0.03 0.66 16 14 C 0.45 10.13 7.31 -10.99 -0.08 10.05 16 15 O -0.56 -14.50 14.28 5.55 0.08 -14.42 16 16 N -0.59 -13.99 5.09 -10.97 -0.06 -14.05 16 17 C -0.30 -8.51 10.16 -14.93 -0.15 -8.66 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 21 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.78 6.42 -51.93 -0.33 0.44 16 27 H 0.06 0.65 4.80 -51.93 -0.25 0.40 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.07 0.65 6.56 -51.93 -0.34 0.31 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.41 1.52 9.10 45.56 0.41 1.94 16 33 H 0.08 1.06 7.98 -51.93 -0.41 0.65 16 34 H 0.05 0.60 6.13 -51.93 -0.32 0.28 16 35 H 0.09 1.37 7.98 -51.93 -0.41 0.96 16 36 H 0.05 0.78 6.19 -51.93 -0.32 0.46 16 37 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 303.29 15.07 4.57 4.57 Total: -1.00 -33.49 303.29 -5.86 -39.35 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -4.20 Total: 11.15 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.50 Total: 4.48 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.26 Total: -47.82 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.76 Total: -26.40 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.49 -5.86 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397016074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.125 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds