Wall clock time and date at job start Mon Mar 30 2020 05:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45963 * 2 1 4 4 C 1.53033 * 109.46158 * 119.97419 * 2 1 3 5 5 C 1.53119 * 109.27815 * 60.82968 * 4 2 1 6 6 C 1.53124 * 109.16080 * 57.65410 * 5 4 2 7 7 H 1.09000 * 109.50457 * 62.32615 * 6 5 4 8 8 C 1.50697 * 109.50602 * 182.40600 * 6 5 4 9 9 O 1.20822 * 120.00128 * 119.99826 * 8 6 5 10 10 O 1.34230 * 119.99888 * 300.27525 * 8 6 5 11 11 C 1.53035 * 109.27454 * 302.34360 * 6 5 4 12 12 N 1.46839 * 109.45590 * 240.02503 * 2 1 3 13 13 C 1.46906 * 111.00052 * 65.82825 * 12 2 1 14 14 C 1.50698 * 109.47029 * 66.36142 * 13 12 2 15 15 O 1.21288 * 120.00177 * 6.17196 * 14 13 12 16 16 N 1.34776 * 119.99818 * 186.17149 * 14 13 12 17 17 C 1.37103 * 120.00116 * 179.97438 * 16 14 13 18 18 H 1.07993 * 119.99785 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99880 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99837 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00211 * 0.02562 * 19 17 16 22 22 H 1.48490 * 109.47257 * 89.99726 * 21 19 17 23 23 H 1.48501 * 109.46913 * 209.99879 * 21 19 17 24 24 H 1.48502 * 109.46873 * 329.99223 * 21 19 17 25 25 H 1.08993 * 109.47792 * 300.01791 * 1 2 3 26 26 H 1.08998 * 109.47368 * 60.02310 * 1 2 3 27 27 H 1.09005 * 109.47163 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.50762 * 300.88872 * 4 2 1 29 29 H 1.09007 * 109.50130 * 180.76959 * 4 2 1 30 30 H 1.08999 * 109.52668 * 297.74883 * 5 4 2 31 31 H 1.09003 * 109.57500 * 177.58450 * 5 4 2 32 32 H 0.96701 * 117.00406 * 179.72342 * 10 8 6 33 33 H 1.09000 * 109.46324 * 179.19017 * 11 6 5 34 34 H 1.08994 * 109.46540 * 299.16302 * 11 6 5 35 35 H 1.09004 * 109.47090 * 186.36579 * 13 12 2 36 36 H 1.09005 * 109.46710 * 306.35955 * 13 12 2 37 37 H 0.97001 * 120.00195 * 0.02562 * 16 14 13 38 38 H 0.96990 * 120.00110 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 1.5441 -2.1695 1.2356 6 6 2.0266 -2.8532 -0.0468 7 1 3.1163 -2.8758 -0.0592 8 6 1.4935 -4.2618 -0.0972 9 8 0.7821 -4.6062 -1.0110 10 8 1.8046 -5.1324 0.8761 11 6 1.5170 -2.0705 -1.2590 12 7 2.0191 -0.6917 -1.1993 13 6 1.6649 0.0506 -2.4165 14 6 2.4075 1.3618 -2.4392 15 8 3.2408 1.6015 -1.5910 16 7 2.1458 2.2679 -3.4019 17 6 2.8209 3.4610 -3.4222 18 1 3.5628 3.6745 -2.6670 19 6 2.5514 4.3950 -4.4151 20 7 3.1982 5.5387 -4.4342 21 14 1.2686 4.0254 -5.7217 22 1 -0.0599 4.5012 -5.2597 23 1 1.6322 4.7201 -6.9828 24 1 1.2141 2.5608 -5.9615 25 1 -0.3634 0.5141 0.8897 26 1 -0.3634 0.5135 -0.8902 27 1 -0.3634 -1.0277 0.0005 28 1 1.6638 -0.2164 2.1399 29 1 3.1299 -0.7093 1.2575 30 1 0.4546 -2.1821 1.2673 31 1 1.9399 -2.6995 2.1020 32 1 1.4358 -6.0233 0.8027 33 1 1.8708 -2.5464 -2.1736 34 1 0.4271 -2.0606 -1.2531 35 1 1.9383 -0.5370 -3.2930 36 1 0.5916 0.2407 -2.4268 37 1 1.4791 2.0763 -4.0800 38 1 3.0098 6.1909 -5.1270 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397016074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:06 Heat of formation + Delta-G solvation = -147.547574 kcal Electronic energy + Delta-G solvation = -21431.194850 eV Core-core repulsion = 18079.522543 eV Total energy + Delta-G solvation = -3351.672307 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77911 -40.68492 -39.36805 -37.09492 -36.00379 -34.64350 -33.71597 -33.05181 -29.44501 -28.35262 -26.30089 -25.25828 -23.89977 -22.25698 -21.21546 -20.28345 -19.55392 -18.97713 -17.80661 -17.62615 -17.01142 -16.73202 -16.71397 -16.42595 -15.41351 -15.27881 -14.97257 -14.80080 -14.41721 -14.34315 -13.96777 -13.94394 -13.74347 -13.23778 -13.07990 -12.90283 -12.73464 -12.51937 -12.40700 -12.12073 -11.98003 -11.89814 -11.57168 -11.49993 -11.32159 -11.13912 -10.34285 -10.20746 -9.16148 -8.39917 -6.00053 1.19595 1.30740 1.35245 1.44123 1.95734 2.00388 2.23453 2.73586 3.16439 3.23464 3.56953 3.78920 3.92829 4.04157 4.17493 4.22337 4.35551 4.43638 4.46767 4.52858 4.62262 4.64837 4.71875 4.74667 4.93532 5.05583 5.11798 5.15947 5.26607 5.51977 5.55080 5.61961 5.91822 6.05425 6.20798 6.61794 6.90506 7.01672 7.42113 7.99308 8.77778 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.034745 B = 0.004275 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.682218 B = 6547.707918 C = 6886.914801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 H 0.062 0.938 4 C -0.102 4.102 5 C -0.101 4.101 6 C -0.076 4.076 7 H 0.120 0.880 8 C 0.498 3.502 9 O -0.548 6.548 10 O -0.507 6.507 11 C 0.071 3.929 12 N -0.524 5.524 13 C 0.051 3.949 14 C 0.455 3.545 15 O -0.601 6.601 16 N -0.594 5.594 17 C -0.325 4.325 18 H 0.057 0.943 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.961 3.039 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.233 1.233 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.428 0.572 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.388 0.612 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 -20.593 8.291 24.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.039 4.039 3 H 0.080 0.920 4 C -0.140 4.140 5 C -0.139 4.139 6 C -0.095 4.095 7 H 0.138 0.862 8 C 0.341 3.659 9 O -0.438 6.438 10 O -0.320 6.320 11 C -0.057 4.057 12 N -0.248 5.248 13 C -0.080 4.080 14 C 0.243 3.757 15 O -0.484 6.484 16 N -0.236 5.236 17 C -0.454 4.454 18 H 0.075 0.925 19 C -0.212 4.212 20 N -0.576 5.576 21 Si 0.782 3.218 22 H -0.182 1.182 23 H -0.200 1.200 24 H -0.157 1.157 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.290 0.710 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.223 0.777 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.293 -19.973 8.600 23.274 hybrid contribution -1.264 0.105 -1.124 1.695 sum -9.558 -19.868 7.476 23.281 Atomic orbital electron populations 1.22466 0.96499 1.02647 1.02561 1.21806 0.93280 0.98440 0.90373 0.91968 1.21509 1.01238 0.94910 0.96303 1.21564 1.01527 0.95225 0.95539 1.20976 1.03650 0.86846 0.98040 0.86175 1.23311 0.76269 0.88122 0.78166 1.90719 1.37118 1.79680 1.36314 1.84496 1.71196 1.27699 1.48645 1.21878 0.98489 0.87558 0.97766 1.61587 1.60386 1.01522 1.01334 1.21835 0.98618 0.92339 0.95223 1.20755 0.85803 0.86514 0.82626 1.90526 1.37528 1.79785 1.40586 1.42056 1.38074 1.15728 1.27780 1.18996 1.20016 0.93068 1.13294 0.92487 1.26059 1.00374 0.94523 1.00292 1.69798 1.43336 1.08542 1.35928 0.85410 0.78305 0.80499 0.77619 1.18205 1.20037 1.15663 0.90904 0.93378 0.90874 0.89564 0.91916 0.90699 0.88604 0.70993 0.90023 0.93050 0.86644 0.90428 0.77696 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.29 8.19 71.98 0.59 -3.71 16 2 C 0.07 2.01 2.60 44.94 0.12 2.13 16 3 H 0.06 2.41 6.05 -2.39 -0.01 2.40 16 4 C -0.10 -2.30 5.61 30.64 0.17 -2.13 16 5 C -0.10 -1.73 4.90 30.68 0.15 -1.58 16 6 C -0.08 -1.47 2.79 -11.49 -0.03 -1.50 16 7 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 8 C 0.50 9.22 7.63 71.23 0.54 9.76 16 9 O -0.55 -13.43 16.74 21.98 0.37 -13.07 16 10 O -0.51 -6.30 13.35 -51.42 -0.69 -6.98 16 11 C 0.07 1.66 3.74 86.32 0.32 1.98 16 12 N -0.52 -15.68 4.29 -875.66 -3.76 -19.44 16 13 C 0.05 1.62 5.29 85.56 0.45 2.08 16 14 C 0.46 20.65 7.31 87.66 0.64 21.29 16 15 O -0.60 -32.91 14.28 -3.05 -0.04 -32.96 16 16 N -0.59 -28.25 5.09 -306.99 -1.56 -29.82 16 17 C -0.32 -19.06 10.16 84.04 0.85 -18.20 16 18 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.94 -56.62 13.96 21.66 0.30 -56.32 16 21 Si 0.96 39.19 27.74 68.60 1.90 41.09 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.20 6.42 -2.39 -0.02 1.19 16 27 H 0.07 1.47 4.80 -2.38 -0.01 1.46 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 30 H 0.07 1.19 6.56 -2.39 -0.02 1.17 16 31 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.43 1.66 9.10 -74.06 -0.67 0.99 16 33 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 34 H 0.05 1.17 6.13 -2.39 -0.01 1.15 16 35 H 0.12 3.16 7.98 -2.38 -0.02 3.14 16 36 H 0.08 2.12 6.19 -2.38 -0.01 2.11 16 37 H 0.39 15.43 5.76 -92.71 -0.53 14.89 16 38 H 0.28 15.42 8.31 -92.72 -0.77 14.65 16 Total: -1.00 -78.05 303.29 0.64 -77.41 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.16 Total: 30.26 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.28 Total: 9.81 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -5.02 Total: -105.57 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.36 Total: -53.01 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 1.90 Total: 41.09 kcal Total: -78.05 0.64 -77.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397016074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.133 kcal (2) G-P(sol) polarization free energy of solvation -78.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds