Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 H 1.09006 * 109.51244 * 305.09938 * 3 2 1 5 5 C 1.53292 * 109.51354 * 184.99533 * 3 2 1 6 6 N 1.47147 * 108.38574 * 187.76905 * 5 3 2 7 7 C 1.34776 * 120.98719 * 230.51360 * 6 5 3 8 8 O 1.21439 * 119.99914 * 8.01667 * 7 6 5 9 9 C 1.48833 * 120.00482 * 188.02041 * 7 6 5 10 10 O 1.21509 * 119.99624 * 6.69698 * 9 7 6 11 11 N 1.34773 * 120.00192 * 186.70835 * 9 7 6 12 12 C 1.36121 * 119.99714 * 179.97438 * 11 9 7 13 13 H 1.07993 * 120.00422 * 359.97438 * 12 11 9 14 14 C 1.39590 * 119.99700 * 179.97438 * 12 11 9 15 15 N 1.31013 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00005 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47425 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47097 * 299.99480 * 16 14 12 19 19 H 1.48493 * 109.47429 * 59.99411 * 16 14 12 20 20 C 1.47153 * 118.03521 * 50.78853 * 6 5 3 21 21 C 1.53707 * 108.16266 * 309.15836 * 20 6 5 22 22 H 1.09003 * 109.66029 * 292.56997 * 21 20 6 23 23 C 1.52998 * 109.48854 * 172.39279 * 21 20 6 24 24 O 1.42960 * 109.51297 * 65.24978 * 3 2 1 25 25 H 1.08999 * 109.46545 * 60.00501 * 1 2 3 26 26 H 1.09000 * 109.46659 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47370 * 300.00651 * 1 2 3 28 28 H 1.08997 * 109.47697 * 239.99784 * 2 1 3 29 29 H 1.09004 * 109.47200 * 119.99257 * 2 1 3 30 30 H 1.09003 * 109.67980 * 68.05015 * 5 3 2 31 31 H 1.09001 * 109.68346 * 307.49569 * 5 3 2 32 32 H 0.96995 * 120.00059 * 359.97438 * 11 9 7 33 33 H 0.97006 * 119.99753 * 0.02562 * 15 14 12 34 34 H 1.09008 * 109.68056 * 68.93352 * 20 6 5 35 35 H 1.08999 * 109.68461 * 189.48487 * 20 6 5 36 36 H 1.08998 * 109.47479 * 300.36613 * 23 21 20 37 37 H 1.09002 * 109.46650 * 60.36764 * 23 21 20 38 38 H 1.08998 * 109.47369 * 180.35771 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 -0.8406 5 6 3.5677 1.4455 -0.1258 6 7 4.0464 2.8239 0.0644 7 6 4.8918 3.3927 -0.8177 8 8 5.1556 2.8254 -1.8585 9 6 5.5022 4.7162 -0.5163 10 8 5.3364 5.2277 0.5734 11 7 6.2387 5.3475 -1.4520 12 6 6.7965 6.5582 -1.1764 13 1 6.6486 7.0131 -0.2082 14 6 7.5596 7.2118 -2.1454 15 7 7.7395 6.6598 -3.3199 16 14 8.3257 8.8729 -1.7671 17 1 9.0816 9.3510 -2.9525 18 1 7.2555 9.8477 -1.4358 19 1 9.2494 8.7405 -0.6120 20 6 3.5796 3.5608 1.2495 21 6 2.0471 3.4567 1.3055 22 1 1.6115 4.0049 0.4701 23 6 1.5431 4.0483 2.6234 24 8 1.6673 2.0808 1.2237 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8553 1.0903 -1.1154 31 1 4.0002 0.7981 0.6371 32 1 6.3712 4.9392 -2.3218 33 1 7.3419 5.7970 -3.5162 34 1 4.0132 3.1227 2.1485 35 1 3.8751 4.6071 1.1711 36 1 1.9805 3.5008 3.4583 37 1 1.8330 5.0973 2.6850 38 1 0.4569 3.9686 2.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689109122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -112.293735 kcal Electronic energy + Delta-G solvation = -21470.437805 eV Core-core repulsion = 18120.294219 eV Total energy + Delta-G solvation = -3350.143585 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33684 -38.76829 -37.29332 -35.26611 -34.50618 -34.05494 -31.42151 -31.33239 -28.70522 -26.29389 -25.60102 -24.20363 -22.22342 -21.52167 -20.79087 -19.31225 -18.21498 -17.21325 -16.74051 -16.30552 -15.50987 -15.19658 -14.89892 -14.71475 -14.39970 -13.95389 -13.85336 -13.54663 -13.40228 -13.10439 -12.53943 -12.45609 -12.19102 -12.00413 -11.73357 -11.49722 -11.29848 -11.14058 -11.10625 -10.95496 -10.56390 -10.35259 -10.32946 -10.13205 -9.94666 -9.78258 -8.42829 -8.31270 -8.05802 -7.11657 -4.15394 2.24280 3.02887 3.22991 3.24401 3.42841 3.64241 4.06348 4.10028 4.54005 4.64963 4.87356 4.96702 5.00243 5.06849 5.17043 5.22508 5.32712 5.39718 5.48831 5.63301 5.66313 5.73564 5.79434 5.85967 5.88025 5.92479 6.09992 6.13812 6.18221 6.39674 6.71684 7.25524 7.40043 7.56836 7.78126 8.10775 8.34711 8.57815 9.12474 9.56708 10.29789 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.004465 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.004150 B = 6269.646953 C = 6895.928422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.081 3.919 4 H 0.061 0.939 5 C 0.080 3.920 6 N -0.598 5.598 7 C 0.516 3.484 8 O -0.550 6.550 9 C 0.392 3.608 10 O -0.581 6.581 11 N -0.505 5.505 12 C -0.384 4.384 13 H 0.111 0.889 14 C 0.001 3.999 15 N -0.862 5.862 16 Si 1.096 2.904 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.279 1.279 20 C 0.050 3.950 21 C 0.072 3.928 22 H 0.059 0.941 23 C -0.139 4.139 24 O -0.378 6.378 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.388 0.612 33 H 0.271 0.729 34 H 0.067 0.933 35 H 0.158 0.842 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -8.092 6.635 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.023 3.977 4 H 0.079 0.921 5 C -0.044 4.044 6 N -0.332 5.332 7 C 0.303 3.697 8 O -0.428 6.428 9 C 0.178 3.822 10 O -0.471 6.471 11 N -0.139 5.139 12 C -0.514 4.514 13 H 0.129 0.871 14 C -0.207 4.207 15 N -0.498 5.498 16 Si 0.920 3.080 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.072 4.072 21 C 0.014 3.986 22 H 0.077 0.923 23 C -0.196 4.196 24 O -0.297 6.297 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.223 0.777 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.174 0.826 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.297 -6.949 6.249 13.906 hybrid contribution -0.770 -1.626 -0.028 1.799 sum -11.067 -8.575 6.221 15.321 Atomic orbital electron populations 1.21690 0.95061 1.01399 1.02333 1.21498 0.96854 0.93880 1.02901 1.22458 0.93205 0.94454 0.87632 0.92144 1.22307 0.94455 0.83823 1.03767 1.47835 1.46148 1.13930 1.25262 1.20627 0.78903 0.87427 0.82728 1.90664 1.61799 1.65511 1.24830 1.18769 0.89136 0.87328 0.86976 1.90294 1.65183 1.68218 1.23436 1.41626 1.40636 1.17804 1.13832 1.20797 1.30854 0.95427 1.04313 0.87092 1.26987 0.95570 1.06082 0.92052 1.70703 1.40048 1.17657 1.21412 0.83083 0.76511 0.72098 0.76307 1.20008 1.20415 1.20429 1.23640 0.92773 1.03801 0.86962 1.22681 0.94606 0.82432 0.98924 0.92339 1.21677 1.01407 1.00978 0.95563 1.87887 1.80085 1.24156 1.37597 0.92952 0.92772 0.91905 0.90411 0.90913 0.88392 0.90994 0.77658 0.91656 0.91496 0.82586 0.91741 0.90471 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.01 16 2 C -0.11 -1.16 5.64 -26.73 -0.15 -1.31 16 3 C 0.08 1.07 2.78 -26.58 -0.07 1.00 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.08 1.21 5.94 -3.54 -0.02 1.19 16 6 N -0.60 -11.09 3.01 -172.76 -0.52 -11.61 16 7 C 0.52 11.45 7.73 -11.87 -0.09 11.36 16 8 O -0.55 -12.90 15.96 5.42 0.09 -12.81 16 9 C 0.39 9.70 7.67 -11.88 -0.09 9.61 16 10 O -0.58 -14.82 12.76 5.36 0.07 -14.76 16 11 N -0.50 -13.13 5.24 -11.59 -0.06 -13.19 16 12 C -0.38 -10.34 9.67 -15.14 -0.15 -10.49 16 13 H 0.11 3.06 7.15 -52.49 -0.38 2.68 16 14 C 0.00 0.03 5.51 -17.40 -0.10 -0.07 16 15 N -0.86 -23.37 13.66 55.53 0.76 -22.61 16 16 Si 1.10 22.52 29.93 -169.99 -5.09 17.43 16 17 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 20 C 0.05 0.85 5.44 -3.32 -0.02 0.83 16 21 C 0.07 1.03 3.41 -26.36 -0.09 0.94 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 C -0.14 -1.60 9.57 37.16 0.36 -1.24 16 24 O -0.38 -5.34 9.57 -35.23 -0.34 -5.67 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.10 1.53 7.06 -51.93 -0.37 1.16 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.39 9.92 6.20 -40.82 -0.25 9.66 16 33 H 0.27 7.29 6.78 -40.82 -0.28 7.01 16 34 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.16 3.07 4.48 -54.11 -0.24 2.83 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -29.98 313.71 -5.79 -35.77 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.37 Total: 11.93 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.06 Total: 10.80 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.18 Total: -47.41 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -0.18 Total: -33.24 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.09 Total: 17.43 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.98 -5.79 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689109122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.524 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds