Wall clock time and date at job start Mon Mar 30 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47055 * 2 1 4 4 H 1.09006 * 109.51244 * 305.09938 * 3 2 1 5 5 C 1.53292 * 109.51354 * 184.99533 * 3 2 1 6 6 N 1.47147 * 108.38574 * 187.76905 * 5 3 2 7 7 C 1.34776 * 120.98719 * 230.51360 * 6 5 3 8 8 O 1.21439 * 119.99914 * 8.01667 * 7 6 5 9 9 C 1.48833 * 120.00482 * 188.02041 * 7 6 5 10 10 O 1.21509 * 119.99624 * 6.69698 * 9 7 6 11 11 N 1.34773 * 120.00192 * 186.70835 * 9 7 6 12 12 C 1.36121 * 119.99714 * 179.97438 * 11 9 7 13 13 H 1.07993 * 120.00422 * 359.97438 * 12 11 9 14 14 C 1.39590 * 119.99700 * 179.97438 * 12 11 9 15 15 N 1.31013 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00005 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47425 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47097 * 299.99480 * 16 14 12 19 19 H 1.48493 * 109.47429 * 59.99411 * 16 14 12 20 20 C 1.47153 * 118.03521 * 50.78853 * 6 5 3 21 21 C 1.53707 * 108.16266 * 309.15836 * 20 6 5 22 22 H 1.09003 * 109.66029 * 292.56997 * 21 20 6 23 23 C 1.52998 * 109.48854 * 172.39279 * 21 20 6 24 24 O 1.42960 * 109.51297 * 65.24978 * 3 2 1 25 25 H 1.08999 * 109.46545 * 60.00501 * 1 2 3 26 26 H 1.09000 * 109.46659 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47370 * 300.00651 * 1 2 3 28 28 H 1.08997 * 109.47697 * 239.99784 * 2 1 3 29 29 H 1.09004 * 109.47200 * 119.99257 * 2 1 3 30 30 H 1.09003 * 109.67980 * 68.05015 * 5 3 2 31 31 H 1.09001 * 109.68346 * 307.49569 * 5 3 2 32 32 H 0.96995 * 120.00059 * 359.97438 * 11 9 7 33 33 H 0.97006 * 119.99753 * 0.02562 * 15 14 12 34 34 H 1.09008 * 109.68056 * 68.93352 * 20 6 5 35 35 H 1.08999 * 109.68461 * 189.48487 * 20 6 5 36 36 H 1.08998 * 109.47479 * 300.36613 * 23 21 20 37 37 H 1.09002 * 109.46650 * 60.36764 * 23 21 20 38 38 H 1.08998 * 109.47369 * 180.35771 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 -0.8406 5 6 3.5677 1.4455 -0.1258 6 7 4.0464 2.8239 0.0644 7 6 4.8918 3.3927 -0.8177 8 8 5.1556 2.8254 -1.8585 9 6 5.5022 4.7162 -0.5163 10 8 5.3364 5.2277 0.5734 11 7 6.2387 5.3475 -1.4520 12 6 6.7965 6.5582 -1.1764 13 1 6.6486 7.0131 -0.2082 14 6 7.5596 7.2118 -2.1454 15 7 7.7395 6.6598 -3.3199 16 14 8.3257 8.8729 -1.7671 17 1 9.0816 9.3510 -2.9525 18 1 7.2555 9.8477 -1.4358 19 1 9.2494 8.7405 -0.6120 20 6 3.5796 3.5608 1.2495 21 6 2.0471 3.4567 1.3055 22 1 1.6115 4.0049 0.4701 23 6 1.5431 4.0483 2.6234 24 8 1.6673 2.0808 1.2237 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 3.8553 1.0903 -1.1154 31 1 4.0002 0.7981 0.6371 32 1 6.3712 4.9392 -2.3218 33 1 7.3419 5.7970 -3.5162 34 1 4.0132 3.1227 2.1485 35 1 3.8751 4.6071 1.1711 36 1 1.9805 3.5008 3.4583 37 1 1.8330 5.0973 2.6850 38 1 0.4569 3.9686 2.6657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689109122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:29 Heat of formation + Delta-G solvation = -133.011442 kcal Electronic energy + Delta-G solvation = -21471.336192 eV Core-core repulsion = 18120.294219 eV Total energy + Delta-G solvation = -3351.041973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.94419 -40.29774 -39.12100 -37.05667 -35.76667 -35.50496 -33.34302 -32.41746 -29.95226 -27.85038 -27.22685 -25.62433 -23.76647 -22.56997 -22.00678 -21.07560 -20.18000 -18.93559 -18.10161 -17.74020 -17.05634 -16.87796 -16.56735 -16.26913 -15.55557 -15.49235 -15.23446 -15.12887 -14.73125 -14.35220 -14.03135 -13.56642 -13.53573 -13.18663 -13.10120 -12.87187 -12.80128 -12.31464 -12.20202 -12.06279 -12.00330 -11.90157 -11.88991 -11.71778 -11.58128 -11.19581 -10.40625 -10.02289 -9.69541 -9.18390 -6.26237 0.39260 1.42467 1.57544 1.61359 1.85054 2.21840 2.36448 2.55955 2.82329 3.05468 3.47726 3.63332 3.81591 3.86093 3.95637 3.99474 4.27452 4.30675 4.37292 4.47033 4.60932 4.68884 4.83958 4.84796 4.92297 4.98693 5.08580 5.20173 5.21740 5.26066 5.34629 5.42375 5.70251 5.90085 6.11788 6.15128 6.40283 6.70675 7.11526 7.54843 8.25054 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.032588 B = 0.004465 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.004150 B = 6269.646953 C = 6895.928422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.083 3.917 4 H 0.053 0.947 5 C 0.075 3.925 6 N -0.589 5.589 7 C 0.516 3.484 8 O -0.567 6.567 9 C 0.393 3.607 10 O -0.590 6.590 11 N -0.520 5.520 12 C -0.413 4.413 13 H 0.099 0.901 14 C -0.031 4.031 15 N -0.883 5.883 16 Si 1.142 2.858 17 H -0.272 1.272 18 H -0.263 1.263 19 H -0.265 1.265 20 C 0.048 3.952 21 C 0.077 3.923 22 H 0.051 0.949 23 C -0.133 4.133 24 O -0.375 6.375 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.387 0.613 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.366 -8.837 7.763 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C 0.024 3.976 4 H 0.071 0.929 5 C -0.047 4.047 6 N -0.322 5.322 7 C 0.302 3.698 8 O -0.447 6.447 9 C 0.179 3.821 10 O -0.480 6.480 11 N -0.155 5.155 12 C -0.543 4.543 13 H 0.117 0.883 14 C -0.233 4.233 15 N -0.519 5.519 16 Si 0.959 3.041 17 H -0.197 1.197 18 H -0.187 1.187 19 H -0.189 1.189 20 C -0.073 4.073 21 C 0.019 3.981 22 H 0.069 0.931 23 C -0.191 4.191 24 O -0.295 6.295 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.222 0.778 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.504 -7.728 7.414 15.718 hybrid contribution -0.520 -1.533 -0.284 1.643 sum -12.024 -9.260 7.131 16.768 Atomic orbital electron populations 1.21671 0.94233 1.02485 1.01839 1.21529 0.97486 0.91580 1.04032 1.22568 0.91514 0.96351 0.87141 0.92945 1.22629 0.96078 0.81699 1.04263 1.47972 1.44397 1.15260 1.24554 1.20158 0.79758 0.86581 0.83351 1.90654 1.62823 1.65630 1.25597 1.19395 0.88093 0.88057 0.86543 1.90315 1.65092 1.68889 1.23701 1.41714 1.41573 1.18084 1.14149 1.20887 1.32566 0.96403 1.04411 0.88269 1.28461 0.95014 1.08708 0.91122 1.70800 1.41142 1.17669 1.22309 0.82576 0.76450 0.68457 0.76639 1.19687 1.18725 1.18949 1.23621 0.95077 1.02112 0.86492 1.22651 0.92230 0.82883 1.00379 0.93050 1.21677 1.02409 1.01043 0.93956 1.87915 1.79761 1.23825 1.37957 0.93078 0.90932 0.92776 0.88921 0.90158 0.88721 0.89181 0.77784 0.92692 0.90544 0.85132 0.91057 0.90063 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.81 71.98 0.71 -1.60 16 2 C -0.11 -1.91 5.64 30.59 0.17 -1.73 16 3 C 0.08 2.02 2.78 30.69 0.09 2.11 16 4 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 5 C 0.08 2.16 5.94 86.35 0.51 2.67 16 6 N -0.59 -21.47 3.01 -818.82 -2.47 -23.94 16 7 C 0.52 23.06 7.73 87.08 0.67 23.74 16 8 O -0.57 -26.85 15.96 -3.52 -0.06 -26.90 16 9 C 0.39 19.87 7.67 87.08 0.67 20.54 16 10 O -0.59 -30.60 12.76 -3.74 -0.05 -30.65 16 11 N -0.52 -27.90 5.24 -308.87 -1.62 -29.51 16 12 C -0.41 -22.82 9.67 84.35 0.82 -22.01 16 13 H 0.10 5.60 7.15 -2.91 -0.02 5.58 16 14 C -0.03 -1.60 5.51 85.14 0.47 -1.13 16 15 N -0.88 -48.72 13.66 21.77 0.30 -48.43 16 16 Si 1.14 44.99 29.93 68.60 2.05 47.04 16 17 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 19 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 20 C 0.05 1.61 5.44 86.49 0.47 2.08 16 21 C 0.08 2.08 3.41 30.83 0.11 2.18 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 C -0.13 -2.77 9.57 71.98 0.69 -2.09 16 24 O -0.38 -9.72 9.57 -148.98 -1.43 -11.15 16 25 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.96 7.83 -2.39 -0.02 0.94 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.09 2.83 7.06 -2.39 -0.02 2.81 16 31 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.39 20.58 6.20 -92.71 -0.57 20.00 16 33 H 0.26 14.53 6.78 -92.70 -0.63 13.90 16 34 H 0.08 2.40 8.14 -2.38 -0.02 2.39 16 35 H 0.13 5.15 4.48 -36.91 -0.17 4.98 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.70 313.71 2.58 -62.11 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.48 Total: 36.67 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 5.37 Total: 24.76 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -3.79 Total: -101.88 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -1.53 Total: -68.71 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.05 Total: 47.04 kcal Total: -64.70 2.58 -62.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689109122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.901 kcal (2) G-P(sol) polarization free energy of solvation -64.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds