Wall clock time and date at job start Mon Mar 30 2020 05:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46856 * 2 1 4 4 O 1.42903 * 109.47244 * 239.99627 * 2 1 3 5 5 C 1.52997 * 109.46753 * 119.99630 * 2 1 3 6 6 H 1.09002 * 109.99450 * 174.29931 * 5 2 1 7 7 C 1.54322 * 109.88534 * 295.39443 * 5 2 1 8 8 C 1.55152 * 102.94266 * 141.61298 * 7 5 2 9 9 C 1.55132 * 101.48820 * 324.33358 * 8 7 5 10 10 N 1.47022 * 109.88553 * 53.20735 * 5 2 1 11 11 C 1.34774 * 125.65270 * 61.59673 * 10 5 2 12 12 O 1.21447 * 119.99621 * 357.76249 * 11 10 5 13 13 C 1.48826 * 120.00170 * 177.76309 * 11 10 5 14 14 O 1.21499 * 120.00188 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99782 * 180.02562 * 13 11 10 16 16 C 1.36122 * 119.99906 * 179.97438 * 15 13 11 17 17 H 1.08006 * 119.99891 * 0.02562 * 16 15 13 18 18 C 1.39585 * 119.99986 * 179.72686 * 16 15 13 19 19 N 1.31019 * 119.99823 * 180.27703 * 18 16 15 20 20 Si 1.86798 * 120.00086 * 0.27502 * 18 16 15 21 21 H 1.48502 * 109.47279 * 90.00057 * 20 18 16 22 22 H 1.48500 * 109.47260 * 210.00190 * 20 18 16 23 23 H 1.48501 * 109.47001 * 330.00145 * 20 18 16 24 24 H 1.08994 * 109.47670 * 300.00266 * 1 2 3 25 25 H 1.09001 * 109.47269 * 60.00395 * 1 2 3 26 26 H 1.09005 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46918 * 174.93084 * 3 2 1 28 28 H 1.09002 * 109.47279 * 294.92926 * 3 2 1 29 29 H 1.09004 * 109.47411 * 54.93192 * 3 2 1 30 30 H 0.96700 * 114.00092 * 324.91274 * 4 2 1 31 31 H 1.09002 * 110.71766 * 259.97226 * 7 5 2 32 32 H 1.08997 * 110.72008 * 23.24797 * 7 5 2 33 33 H 1.09009 * 111.00588 * 82.57372 * 8 7 5 34 34 H 1.09005 * 111.00516 * 206.42423 * 8 7 5 35 35 H 1.09000 * 110.49342 * 278.45373 * 9 8 7 36 36 H 1.09001 * 110.34419 * 156.06165 * 9 8 7 37 37 H 0.97000 * 120.00367 * 0.02562 * 15 13 11 38 38 H 0.97008 * 119.99467 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 1 3.1251 -0.8151 1.2086 7 6 1.6281 0.0631 2.5130 8 6 1.2701 -1.0623 3.5191 9 6 0.6315 -2.1219 2.5832 10 7 1.4259 -2.0537 1.3431 11 6 1.5618 -3.0465 0.4418 12 8 2.2062 -2.8630 -0.5710 13 6 0.9222 -4.3676 0.6878 14 8 0.2778 -4.5513 1.7014 15 7 1.0586 -5.3606 -0.2133 16 6 0.4740 -6.5690 0.0119 17 1 -0.0995 -6.7321 0.9125 18 6 0.6105 -7.5956 -0.9240 19 7 0.0432 -8.7570 -0.7097 20 14 1.6017 -7.3135 -2.4819 21 1 3.0198 -7.6821 -2.2400 22 1 1.0521 -8.1524 -3.5771 23 1 1.5214 -5.8816 -2.8672 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1261 1.4438 0.0908 28 1 1.7526 1.9294 -0.9319 29 1 1.6044 1.9819 0.8411 30 1 1.4560 -1.4194 -1.4426 31 1 2.4603 0.6614 2.8837 32 1 0.7601 0.6908 2.3115 33 1 2.1652 -1.4528 4.0035 34 1 0.5496 -0.7113 4.2579 35 1 -0.4104 -1.8737 2.3805 36 1 0.7063 -3.1144 3.0276 37 1 1.5739 -5.2143 -1.0219 38 1 0.1378 -9.4703 -1.3604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707422905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:56 Heat of formation + Delta-G solvation = -129.575186 kcal Electronic energy + Delta-G solvation = -22194.573541 eV Core-core repulsion = 18843.680576 eV Total energy + Delta-G solvation = -3350.892965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.00144 -40.20018 -38.61268 -37.61518 -36.28330 -34.04227 -33.37123 -32.32052 -29.24024 -28.32298 -27.94315 -25.62731 -23.39306 -22.72964 -21.43236 -20.72896 -19.67867 -18.56409 -18.13603 -17.88370 -17.09216 -16.67268 -16.29184 -15.88993 -15.59390 -15.19207 -14.81233 -14.62902 -14.45604 -14.25723 -14.00346 -13.69606 -13.20412 -13.11516 -13.07314 -12.97637 -12.80985 -12.57307 -12.51179 -12.37380 -12.07405 -11.84922 -11.76078 -11.72118 -11.40890 -10.90295 -10.48210 -10.13625 -9.62723 -8.63695 -6.16972 0.49369 1.27188 1.30716 1.36385 1.58685 2.08228 2.24622 2.88450 3.05006 3.29131 3.58076 3.66121 3.78408 3.90294 4.00670 4.10436 4.20357 4.41434 4.54104 4.68725 4.80432 4.84202 4.91095 4.96356 5.02467 5.09945 5.12940 5.17674 5.24306 5.27462 5.36813 5.42988 5.73565 6.15274 6.30126 6.55733 6.74094 6.95324 7.15819 7.62193 8.50809 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.027391 B = 0.005862 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.995091 B = 4775.512828 C = 5482.484247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 C -0.133 4.133 4 O -0.572 6.572 5 C 0.107 3.893 6 H 0.066 0.934 7 C -0.115 4.115 8 C -0.124 4.124 9 C 0.089 3.911 10 N -0.582 5.582 11 C 0.523 3.477 12 O -0.544 6.544 13 C 0.409 3.591 14 O -0.592 6.592 15 N -0.534 5.534 16 C -0.336 4.336 17 H 0.079 0.921 18 C 0.013 3.987 19 N -0.892 5.892 20 Si 0.945 3.055 21 H -0.255 1.255 22 H -0.257 1.257 23 H -0.248 1.248 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.373 0.627 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.392 0.608 38 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 20.799 3.781 21.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.065 3.935 3 C -0.191 4.191 4 O -0.384 6.384 5 C 0.005 3.995 6 H 0.084 0.916 7 C -0.153 4.153 8 C -0.162 4.162 9 C -0.033 4.033 10 N -0.314 5.314 11 C 0.308 3.692 12 O -0.424 6.424 13 C 0.194 3.806 14 O -0.479 6.479 15 N -0.172 5.172 16 C -0.466 4.466 17 H 0.097 0.903 18 C -0.192 4.192 19 N -0.530 5.530 20 Si 0.765 3.235 21 H -0.179 1.179 22 H -0.181 1.181 23 H -0.173 1.173 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.226 0.774 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.228 0.772 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.274 20.928 3.844 21.528 hybrid contribution -0.077 -1.357 -1.064 1.726 sum 3.198 19.571 2.780 20.024 Atomic orbital electron populations 1.22522 0.94965 1.01541 1.04200 1.21806 0.93528 0.93688 0.84460 1.21826 1.01875 0.91592 1.03762 1.86490 1.56993 1.49403 1.45500 1.22667 0.97549 0.81296 0.98033 0.91556 1.22849 1.04164 0.97084 0.91192 1.22893 1.01933 0.94235 0.97093 1.22826 0.94904 1.01985 0.83559 1.48335 1.48363 1.12406 1.22340 1.19733 0.81159 0.84886 0.83384 1.90588 1.42259 1.82097 1.27430 1.19590 0.88537 0.86182 0.86325 1.90550 1.45931 1.82818 1.28555 1.41695 1.44746 1.10828 1.19940 1.19147 1.31416 0.87898 1.08125 0.90329 1.26022 0.97525 0.94035 1.01641 1.69548 1.41617 1.03960 1.37867 0.85630 0.79519 0.80242 0.78087 1.17884 1.18053 1.17252 0.88594 0.91341 0.94890 0.92205 0.91898 0.87987 0.77397 0.87094 0.87910 0.90623 0.86782 0.91077 0.90554 0.77232 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 8.14 71.98 0.59 -3.30 16 2 C 0.11 2.63 0.94 -10.80 -0.01 2.62 16 3 C -0.13 -2.32 8.42 71.98 0.61 -1.71 16 4 O -0.57 -19.35 11.38 -125.80 -1.43 -20.78 16 5 C 0.11 2.69 2.59 45.34 0.12 2.80 16 6 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.12 -1.70 5.23 31.78 0.17 -1.54 16 8 C -0.12 -2.15 7.10 32.06 0.23 -1.92 16 9 C 0.09 2.53 6.16 86.93 0.54 3.07 16 10 N -0.58 -18.96 2.08 -789.87 -1.64 -20.60 16 11 C 0.52 21.63 7.30 87.08 0.64 22.27 16 12 O -0.54 -23.33 12.61 19.64 0.25 -23.08 16 13 C 0.41 20.08 7.78 87.08 0.68 20.76 16 14 O -0.59 -31.37 13.28 -3.71 -0.05 -31.42 16 15 N -0.53 -27.41 5.06 -308.87 -1.56 -28.97 16 16 C -0.34 -19.50 10.16 84.35 0.86 -18.65 16 17 H 0.08 5.20 7.37 -2.91 -0.02 5.18 16 18 C 0.01 0.69 5.51 85.14 0.47 1.16 16 19 N -0.89 -51.00 13.94 21.77 0.30 -50.70 16 20 Si 0.95 40.00 27.74 68.60 1.90 41.90 16 21 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.25 -9.99 6.52 99.48 0.65 -9.34 16 24 H 0.10 1.54 6.34 -2.39 -0.02 1.53 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.03 0.92 7.30 -2.38 -0.02 0.90 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.10 1.07 6.95 -2.38 -0.02 1.06 16 30 H 0.37 13.63 6.03 -74.06 -0.45 13.18 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.11 5.49 -2.39 -0.01 1.10 16 33 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.73 6.00 -2.39 -0.01 2.71 16 37 H 0.39 18.59 5.22 -92.71 -0.48 18.10 16 38 H 0.29 14.96 8.30 -92.70 -0.77 14.19 16 Total: -1.00 -70.33 300.28 2.74 -67.59 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.11 Total: 40.51 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 4.87 Total: 25.56 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -2.90 Total: -100.27 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -1.23 Total: -75.28 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.90 Total: 41.90 kcal Total: -70.33 2.74 -67.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707422905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.988 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds