Wall clock time and date at job start Mon Mar 30 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.69890 * 2 1 4 4 C 1.53185 * 109.58740 * 120.35236 * 2 1 3 5 5 C 1.53043 * 109.31502 * 174.42108 * 4 2 1 6 6 C 1.53038 * 109.53746 * 298.63849 * 5 4 2 7 7 H 1.08997 * 109.49807 * 301.41250 * 6 5 4 8 8 C 1.53002 * 109.49760 * 181.34380 * 6 5 4 9 9 O 1.42896 * 109.47055 * 174.99885 * 8 6 5 10 10 C 1.52761 * 109.38207 * 61.23795 * 6 5 4 11 11 N 1.46922 * 109.01019 * 305.58511 * 10 6 5 12 12 C 1.34773 * 120.63359 * 233.58318 * 11 10 6 13 13 O 1.21444 * 120.00305 * 183.27485 * 12 11 10 14 14 C 1.48831 * 119.99966 * 3.28052 * 12 11 10 15 15 O 1.21507 * 119.99868 * 354.02654 * 14 12 11 16 16 N 1.34774 * 120.00348 * 174.02607 * 14 12 11 17 17 C 1.36120 * 120.00312 * 179.97438 * 16 14 12 18 18 H 1.07998 * 120.00049 * 0.02562 * 17 16 14 19 19 C 1.39588 * 120.00213 * 179.97438 * 17 16 14 20 20 N 1.31016 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47499 * 270.00420 * 21 19 17 23 23 H 1.48498 * 109.47420 * 150.00135 * 21 19 17 24 24 H 1.48506 * 109.46882 * 30.00533 * 21 19 17 25 25 H 1.09003 * 109.47198 * 175.05822 * 1 2 3 26 26 H 1.09000 * 109.47381 * 295.05963 * 1 2 3 27 27 H 1.09008 * 109.47245 * 55.05935 * 1 2 3 28 28 H 1.08998 * 109.50382 * 294.37513 * 4 2 1 29 29 H 1.09005 * 109.49739 * 54.47093 * 4 2 1 30 30 H 1.09004 * 109.45672 * 58.65933 * 5 4 2 31 31 H 1.08994 * 109.46192 * 178.61399 * 5 4 2 32 32 H 1.09000 * 109.47364 * 294.99956 * 8 6 5 33 33 H 1.08999 * 109.46873 * 54.99927 * 8 6 5 34 34 H 0.96699 * 113.99872 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.51041 * 185.70421 * 10 6 5 36 36 H 1.08996 * 109.43561 * 65.42525 * 10 6 5 37 37 H 0.97006 * 119.99964 * 359.97438 * 16 14 12 38 38 H 0.97002 * 120.00294 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 3.5675 -0.8479 1.1701 6 6 3.9569 -1.6657 -0.0634 7 1 3.4983 -2.6527 -0.0052 8 6 5.4789 -1.8121 -0.1195 9 8 5.8350 -2.6717 -1.2040 10 6 3.4644 -0.9518 -1.3210 11 7 2.0226 -0.6995 -1.1945 12 6 1.1674 -1.1069 -2.1532 13 8 -0.0143 -0.8404 -2.0661 14 6 1.6710 -1.8835 -3.3186 15 8 2.8649 -2.0573 -3.4626 16 7 0.8029 -2.3941 -4.2142 17 6 1.2636 -3.1039 -5.2804 18 1 2.3248 -3.2584 -5.4084 19 6 0.3644 -3.6332 -6.2077 20 7 -0.9229 -3.4462 -6.0520 21 14 0.9967 -4.6067 -7.6712 22 1 1.2438 -3.6853 -8.8092 23 1 -0.0143 -5.6203 -8.0655 24 1 2.2633 -5.2885 -7.3022 25 1 -0.3634 -1.0239 -0.0885 26 1 -0.3634 0.4353 0.9309 27 1 -0.3634 0.5886 -0.8425 28 1 1.7660 -0.1668 2.1368 29 1 1.6029 -1.7253 1.2914 30 1 4.0061 0.1475 1.0993 31 1 3.9378 -1.3447 2.0669 32 1 5.9330 -0.8324 -0.2682 33 1 5.8373 -2.2404 0.8165 34 1 6.7872 -2.8104 -1.2995 35 1 3.6504 -1.5797 -2.1925 36 1 3.9928 -0.0049 -1.4310 37 1 -0.1503 -2.2557 -4.0990 38 1 -1.2513 -2.9404 -5.2923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708476762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:15 Heat of formation + Delta-G solvation = -99.046842 kcal Electronic energy + Delta-G solvation = -21866.865046 eV Core-core repulsion = 18517.295889 eV Total energy + Delta-G solvation = -3349.569157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39257 -38.21365 -37.39957 -36.13779 -34.77349 -32.86497 -32.31837 -31.21165 -28.19954 -25.93001 -25.04898 -23.78079 -22.96249 -21.16099 -20.17897 -19.03041 -18.08830 -17.21789 -16.95265 -15.96421 -15.43851 -15.01569 -14.73521 -14.62894 -14.19577 -13.89916 -13.82887 -13.65553 -13.25518 -13.13350 -12.46381 -12.28942 -12.04564 -11.92192 -11.39651 -11.21556 -11.07293 -10.91582 -10.87452 -10.80545 -10.49813 -10.28648 -10.00518 -9.89860 -9.76091 -9.34236 -8.30832 -8.20585 -7.65101 -7.02565 -4.06278 2.38121 3.20995 3.28656 3.32209 3.48026 4.14053 4.22508 4.24180 4.66095 4.81992 4.95325 5.01473 5.06714 5.15728 5.26313 5.44119 5.46454 5.57817 5.60999 5.68859 5.77854 5.84672 5.86562 5.94978 6.04677 6.13948 6.34768 6.51415 6.61368 6.81324 7.13513 7.51608 7.76339 7.79057 7.91790 8.23476 8.52072 8.72347 9.23296 9.69664 10.39215 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.005829 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.286572 B = 4802.697776 C = 5971.164332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.137 3.863 3 H 0.066 0.934 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.101 4.101 7 H 0.078 0.922 8 C 0.088 3.912 9 O -0.559 6.559 10 C 0.051 3.949 11 N -0.586 5.586 12 C 0.515 3.485 13 O -0.546 6.546 14 C 0.392 3.608 15 O -0.567 6.567 16 N -0.507 5.507 17 C -0.383 4.383 18 H 0.111 0.889 19 C 0.000 4.000 20 N -0.867 5.867 21 Si 1.098 2.902 22 H -0.280 1.280 23 H -0.278 1.278 24 H -0.279 1.279 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.374 0.626 35 H 0.186 0.814 36 H 0.048 0.952 37 H 0.388 0.612 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 4.543 12.575 15.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.166 4.166 5 C -0.152 4.152 6 C -0.121 4.121 7 H 0.097 0.903 8 C 0.009 3.991 9 O -0.364 6.364 10 C -0.069 4.069 11 N -0.320 5.320 12 C 0.302 3.698 13 O -0.425 6.425 14 C 0.179 3.821 15 O -0.457 6.457 16 N -0.142 5.142 17 C -0.513 4.513 18 H 0.129 0.871 19 C -0.208 4.208 20 N -0.504 5.504 21 Si 0.923 3.077 22 H -0.206 1.206 23 H -0.203 1.203 24 H -0.204 1.204 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.220 0.780 35 H 0.201 0.799 36 H 0.067 0.933 37 H 0.223 0.777 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.705 3.738 11.092 14.013 hybrid contribution 0.639 1.184 1.962 2.379 sum 8.344 4.923 13.054 16.256 Atomic orbital electron populations 1.22208 0.92732 1.03861 1.00573 1.21310 0.95821 0.94951 0.84540 0.91568 1.21968 0.95591 1.01527 0.97505 1.21539 0.96031 1.00150 0.97453 1.21426 0.94202 1.00601 0.95831 0.90341 1.22071 0.95106 0.92948 0.88949 1.86673 1.28154 1.69456 1.52083 1.23490 0.77960 1.02030 1.03454 1.47908 1.08308 1.56554 1.19182 1.20455 0.85563 0.79825 0.83963 1.90713 1.16779 1.57182 1.77786 1.19009 0.87065 0.89377 0.86694 1.90032 1.14601 1.65547 1.75507 1.41583 1.08905 1.43013 1.20667 1.20817 0.97514 1.31045 1.01962 0.87119 1.26936 0.93432 0.98053 1.02331 1.70669 1.13634 1.35790 1.30264 0.83047 0.75411 0.75925 0.73364 1.20634 1.20317 1.20392 0.91558 0.94346 0.90297 0.90914 0.91441 0.91876 0.91930 0.93907 0.94064 0.78032 0.79939 0.93340 0.77679 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 7.60 37.16 0.28 -1.87 16 2 C 0.14 2.07 3.49 -67.60 -0.24 1.84 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.13 -1.58 5.37 -26.61 -0.14 -1.72 16 5 C -0.11 -1.31 5.17 -26.69 -0.14 -1.45 16 6 C -0.10 -1.46 2.56 -90.72 -0.23 -1.69 16 7 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 8 C 0.09 1.06 6.43 37.16 0.24 1.30 16 9 O -0.56 -7.96 13.30 -35.23 -0.47 -8.43 16 10 C 0.05 0.91 5.35 -3.93 -0.02 0.89 16 11 N -0.59 -10.95 2.98 -166.22 -0.50 -11.44 16 12 C 0.52 11.48 7.59 -11.88 -0.09 11.39 16 13 O -0.55 -12.43 11.98 5.42 0.06 -12.37 16 14 C 0.39 9.94 7.74 -11.88 -0.09 9.85 16 15 O -0.57 -15.04 12.56 5.36 0.07 -14.98 16 16 N -0.51 -13.44 5.24 -11.59 -0.06 -13.50 16 17 C -0.38 -10.58 9.68 -15.15 -0.15 -10.73 16 18 H 0.11 3.15 7.15 -52.49 -0.38 2.78 16 19 C 0.00 0.00 5.51 -17.40 -0.10 -0.10 16 20 N -0.87 -23.95 13.66 55.53 0.76 -23.19 16 21 Si 1.10 23.20 29.93 -169.99 -5.09 18.11 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H 0.07 1.18 6.93 -51.93 -0.36 0.82 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.40 6.56 -51.92 -0.34 1.06 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 3.32 9.12 45.56 0.42 3.73 16 35 H 0.19 4.01 3.55 -57.24 -0.20 3.81 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 10.05 6.20 -40.82 -0.25 9.80 16 38 H 0.27 7.41 6.78 -40.82 -0.28 7.13 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -31.51 305.17 -5.71 -37.22 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -4.42 Total: 16.28 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.67 Total: 7.70 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.20 Total: -48.14 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.34 Total: -35.77 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.09 Total: 18.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.51 -5.71 -37.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708476762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.824 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds