Wall clock time and date at job start Mon Mar 30 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.69890 * 2 1 4 4 C 1.53185 * 109.58740 * 120.35236 * 2 1 3 5 5 C 1.53043 * 109.31502 * 174.42108 * 4 2 1 6 6 C 1.53038 * 109.53746 * 298.63849 * 5 4 2 7 7 H 1.08997 * 109.49807 * 301.41250 * 6 5 4 8 8 C 1.53002 * 109.49760 * 181.34380 * 6 5 4 9 9 O 1.42896 * 109.47055 * 174.99885 * 8 6 5 10 10 C 1.52761 * 109.38207 * 61.23795 * 6 5 4 11 11 N 1.46922 * 109.01019 * 305.58511 * 10 6 5 12 12 C 1.34773 * 120.63359 * 233.58318 * 11 10 6 13 13 O 1.21444 * 120.00305 * 183.27485 * 12 11 10 14 14 C 1.48831 * 119.99966 * 3.28052 * 12 11 10 15 15 O 1.21507 * 119.99868 * 354.02654 * 14 12 11 16 16 N 1.34774 * 120.00348 * 174.02607 * 14 12 11 17 17 C 1.36120 * 120.00312 * 179.97438 * 16 14 12 18 18 H 1.07998 * 120.00049 * 0.02562 * 17 16 14 19 19 C 1.39588 * 120.00213 * 179.97438 * 17 16 14 20 20 N 1.31016 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47499 * 270.00420 * 21 19 17 23 23 H 1.48498 * 109.47420 * 150.00135 * 21 19 17 24 24 H 1.48506 * 109.46882 * 30.00533 * 21 19 17 25 25 H 1.09003 * 109.47198 * 175.05822 * 1 2 3 26 26 H 1.09000 * 109.47381 * 295.05963 * 1 2 3 27 27 H 1.09008 * 109.47245 * 55.05935 * 1 2 3 28 28 H 1.08998 * 109.50382 * 294.37513 * 4 2 1 29 29 H 1.09005 * 109.49739 * 54.47093 * 4 2 1 30 30 H 1.09004 * 109.45672 * 58.65933 * 5 4 2 31 31 H 1.08994 * 109.46192 * 178.61399 * 5 4 2 32 32 H 1.09000 * 109.47364 * 294.99956 * 8 6 5 33 33 H 1.08999 * 109.46873 * 54.99927 * 8 6 5 34 34 H 0.96699 * 113.99872 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.51041 * 185.70421 * 10 6 5 36 36 H 1.08996 * 109.43561 * 65.42525 * 10 6 5 37 37 H 0.97006 * 119.99964 * 359.97438 * 16 14 12 38 38 H 0.97002 * 120.00294 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 3.5675 -0.8479 1.1701 6 6 3.9569 -1.6657 -0.0634 7 1 3.4983 -2.6527 -0.0052 8 6 5.4789 -1.8121 -0.1195 9 8 5.8350 -2.6717 -1.2040 10 6 3.4644 -0.9518 -1.3210 11 7 2.0226 -0.6995 -1.1945 12 6 1.1674 -1.1069 -2.1532 13 8 -0.0143 -0.8404 -2.0661 14 6 1.6710 -1.8835 -3.3186 15 8 2.8649 -2.0573 -3.4626 16 7 0.8029 -2.3941 -4.2142 17 6 1.2636 -3.1039 -5.2804 18 1 2.3248 -3.2584 -5.4084 19 6 0.3644 -3.6332 -6.2077 20 7 -0.9229 -3.4462 -6.0520 21 14 0.9967 -4.6067 -7.6712 22 1 1.2438 -3.6853 -8.8092 23 1 -0.0143 -5.6203 -8.0655 24 1 2.2633 -5.2885 -7.3022 25 1 -0.3634 -1.0239 -0.0885 26 1 -0.3634 0.4353 0.9309 27 1 -0.3634 0.5886 -0.8425 28 1 1.7660 -0.1668 2.1368 29 1 1.6029 -1.7253 1.2914 30 1 4.0061 0.1475 1.0993 31 1 3.9378 -1.3447 2.0669 32 1 5.9330 -0.8324 -0.2682 33 1 5.8373 -2.2404 0.8165 34 1 6.7872 -2.8104 -1.2995 35 1 3.6504 -1.5797 -2.1925 36 1 3.9928 -0.0049 -1.4310 37 1 -0.1503 -2.2557 -4.0990 38 1 -1.2513 -2.9404 -5.2923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708476762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:15 Heat of formation + Delta-G solvation = -124.251282 kcal Electronic energy + Delta-G solvation = -21867.957992 eV Core-core repulsion = 18517.295889 eV Total energy + Delta-G solvation = -3350.662104 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.02496 -39.89828 -38.95314 -37.37759 -36.74845 -34.14216 -33.72720 -33.21175 -29.36375 -27.72393 -26.63361 -25.17456 -24.36954 -22.63778 -21.41326 -20.74059 -20.06356 -18.71367 -18.20958 -17.53204 -17.00208 -16.69556 -16.61585 -15.89772 -15.54577 -15.49497 -15.29719 -15.11231 -14.54289 -14.45327 -13.98162 -13.69728 -13.49143 -13.31691 -13.18337 -12.87861 -12.46423 -12.17196 -12.06093 -11.95992 -11.88175 -11.85358 -11.67686 -11.58245 -10.97760 -10.83112 -10.36110 -9.66419 -9.47029 -9.15516 -6.23134 0.51748 1.52447 1.61769 1.66180 1.85240 2.31820 2.39247 2.92555 3.08902 3.33626 3.65757 3.76788 3.84332 3.93448 4.02698 4.22359 4.29359 4.45663 4.57462 4.63964 4.67440 4.75535 4.79500 4.91740 5.00544 5.07955 5.13440 5.23956 5.31251 5.41142 5.42104 5.62188 5.80967 6.11848 6.24433 6.54206 6.88513 7.01963 7.18556 7.64622 8.28334 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.005829 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.286572 B = 4802.697776 C = 5971.164332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.128 3.872 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.106 4.106 6 C -0.100 4.100 7 H 0.047 0.953 8 C 0.087 3.913 9 O -0.596 6.596 10 C 0.047 3.953 11 N -0.576 5.576 12 C 0.512 3.488 13 O -0.557 6.557 14 C 0.391 3.609 15 O -0.582 6.582 16 N -0.524 5.524 17 C -0.414 4.414 18 H 0.094 0.906 19 C -0.032 4.032 20 N -0.887 5.887 21 Si 1.145 2.855 22 H -0.264 1.264 23 H -0.270 1.270 24 H -0.268 1.268 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.394 0.606 35 H 0.145 0.855 36 H 0.067 0.933 37 H 0.387 0.613 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.281 5.588 14.797 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.027 3.973 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.143 4.143 6 C -0.119 4.119 7 H 0.066 0.934 8 C 0.009 3.991 9 O -0.405 6.405 10 C -0.074 4.074 11 N -0.308 5.308 12 C 0.296 3.704 13 O -0.437 6.437 14 C 0.177 3.823 15 O -0.472 6.472 16 N -0.159 5.159 17 C -0.543 4.543 18 H 0.112 0.888 19 C -0.234 4.234 20 N -0.523 5.523 21 Si 0.961 3.039 22 H -0.189 1.189 23 H -0.195 1.195 24 H -0.193 1.193 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.129 0.871 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.243 0.757 35 H 0.161 0.839 36 H 0.085 0.915 37 H 0.222 0.778 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.288 4.806 13.361 16.967 hybrid contribution 0.251 0.955 1.430 1.738 sum 9.539 5.761 14.790 18.519 Atomic orbital electron populations 1.22067 0.93374 1.01903 1.01487 1.21722 0.95447 0.96202 0.83947 0.89064 1.21981 0.96264 1.00767 0.97070 1.21531 0.95221 1.00934 0.96651 1.21425 0.95888 0.99004 0.95602 0.93444 1.22188 0.93299 0.93957 0.89650 1.86622 1.30391 1.70163 1.53276 1.23302 0.77544 1.02463 1.04059 1.48049 1.08379 1.55218 1.19194 1.19976 0.85925 0.80343 0.84112 1.90729 1.17100 1.57838 1.78033 1.19853 0.86893 0.88415 0.87131 1.90110 1.15221 1.65572 1.76256 1.41685 1.08992 1.44052 1.21218 1.20859 0.97075 1.32981 1.03433 0.88761 1.28430 0.92855 0.97903 1.04216 1.70767 1.14344 1.36858 1.30339 0.82538 0.75429 0.75159 0.70728 1.18923 1.19500 1.19279 0.94335 0.90484 0.92833 0.87141 0.93118 0.89712 0.89096 0.91913 0.91101 0.75676 0.83937 0.91507 0.77803 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 7.60 71.98 0.55 -3.40 16 2 C 0.13 3.55 3.49 44.97 0.16 3.71 16 3 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 4 C -0.12 -2.56 5.37 30.67 0.16 -2.40 16 5 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 6 C -0.10 -2.68 2.56 -10.86 -0.03 -2.70 16 7 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 8 C 0.09 1.86 6.43 71.98 0.46 2.32 16 9 O -0.60 -16.41 13.30 -148.98 -1.98 -18.40 16 10 C 0.05 1.63 5.35 86.22 0.46 2.09 16 11 N -0.58 -21.21 2.98 -798.12 -2.38 -23.59 16 12 C 0.51 23.44 7.59 87.08 0.66 24.10 16 13 O -0.56 -26.19 11.98 -3.54 -0.04 -26.23 16 14 C 0.39 20.71 7.74 87.08 0.67 21.39 16 15 O -0.58 -32.24 12.56 -3.74 -0.05 -32.29 16 16 N -0.52 -29.25 5.24 -308.87 -1.62 -30.87 16 17 C -0.41 -23.89 9.68 84.35 0.82 -23.08 16 18 H 0.09 5.63 7.15 -2.91 -0.02 5.61 16 19 C -0.03 -1.74 5.51 85.14 0.47 -1.27 16 20 N -0.89 -50.39 13.66 21.77 0.30 -50.09 16 21 Si 1.14 47.04 29.93 68.60 2.05 49.10 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 25 H 0.04 1.36 6.93 -2.39 -0.02 1.34 16 26 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 1.87 6.56 -2.38 -0.02 1.86 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.39 6.51 9.12 -74.06 -0.68 5.83 16 35 H 0.14 6.40 3.55 -86.55 -0.31 6.09 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.39 21.29 6.20 -92.70 -0.57 20.71 16 38 H 0.26 14.94 6.78 -92.71 -0.63 14.31 16 Total: -1.00 -72.49 305.17 0.51 -71.97 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -0.31 Total: 41.44 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 4.54 Total: 18.96 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.70 Total: -104.55 kcal Atomic # 8 Polarization: -74.85 SS G_CDS: -2.07 Total: -76.92 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.05 Total: 49.10 kcal Total: -72.49 0.51 -71.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708476762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.280 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds