Wall clock time and date at job start Mon Mar 30 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.37045 * 2 1 4 4 C 1.54375 * 110.32544 * 237.81708 * 2 1 3 5 5 N 1.48562 * 104.59558 * 217.24845 * 4 2 1 6 6 C 1.46900 * 110.99771 * 159.03777 * 5 4 2 7 7 C 1.50700 * 109.47041 * 61.04211 * 6 5 4 8 8 O 1.21293 * 120.00099 * 5.85655 * 7 6 5 9 9 N 1.34781 * 119.99875 * 185.85590 * 7 6 5 10 10 C 1.37097 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99986 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99908 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99999 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46988 * 270.00775 * 14 12 10 16 16 H 1.48500 * 109.46878 * 30.00212 * 14 12 10 17 17 H 1.48498 * 109.46981 * 150.00402 * 14 12 10 18 18 C 1.48556 * 104.22038 * 39.48500 * 5 4 2 19 19 C 1.54262 * 110.32656 * 122.17577 * 2 1 3 20 20 H 1.08994 * 110.32866 * 237.79033 * 19 2 1 21 21 C 1.50707 * 110.32042 * 0.02562 * 19 2 1 22 22 O 1.20824 * 120.00026 * 86.23732 * 21 19 2 23 23 O 1.34227 * 119.99592 * 266.23750 * 21 19 2 24 24 H 1.09008 * 109.46988 * 296.39290 * 1 2 3 25 25 H 1.08995 * 109.46797 * 56.39210 * 1 2 3 26 26 H 1.08996 * 109.47128 * 176.39345 * 1 2 3 27 27 H 1.08999 * 109.47648 * 182.18107 * 3 2 1 28 28 H 1.09001 * 109.47095 * 302.18634 * 3 2 1 29 29 H 1.09003 * 109.47474 * 62.17974 * 3 2 1 30 30 H 1.09005 * 110.41409 * 98.47374 * 4 2 1 31 31 H 1.08999 * 110.40735 * 336.02876 * 4 2 1 32 32 H 1.09002 * 109.47410 * 301.03791 * 6 5 4 33 33 H 1.08996 * 109.47402 * 181.04155 * 6 5 4 34 34 H 0.97004 * 120.00003 * 359.97438 * 9 7 6 35 35 H 0.97002 * 119.99697 * 179.97438 * 13 12 10 36 36 H 1.08998 * 110.41389 * 79.29356 * 18 5 4 37 37 H 1.09002 * 110.41344 * 201.62074 * 18 5 4 38 38 H 0.96703 * 116.99909 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2694 -1.4828 -0.7224 6 6 3.6068 -2.6217 -1.5867 7 6 3.9109 -2.1247 -2.9766 8 8 3.9565 -0.9331 -3.1981 9 7 4.1321 -3.0045 -3.9734 10 6 4.4092 -2.5524 -5.2377 11 1 4.4498 -1.4913 -5.4349 12 6 4.6367 -3.4594 -6.2655 13 7 4.9018 -3.0261 -7.4775 14 14 4.5657 -5.2946 -5.9245 15 1 5.9145 -5.7780 -5.5337 16 1 3.6073 -5.5562 -4.8208 17 1 4.1191 -6.0085 -7.1476 18 6 2.8807 -1.9421 0.6358 19 6 2.0659 -0.7703 1.2244 20 1 2.7082 -0.1267 1.8253 21 6 0.9224 -1.2936 2.0550 22 8 0.4197 -2.3593 1.7877 23 8 0.4624 -0.5757 3.0917 24 1 -0.3633 0.4569 0.9206 25 1 -0.3633 0.5688 -0.8559 26 1 -0.3633 -1.0256 -0.0646 27 1 3.1517 1.4176 -0.0391 28 1 1.6759 1.9655 -0.8697 29 1 1.7394 1.9419 0.9089 30 1 2.3395 -0.0779 -2.0209 31 1 1.3229 -1.4848 -1.5802 32 1 2.7640 -3.3119 -1.6238 33 1 4.4801 -3.1360 -1.1857 34 1 4.0959 -3.9575 -3.7961 35 1 5.0610 -3.6592 -8.1949 36 1 2.2649 -2.8392 0.5721 37 1 3.7671 -2.1327 1.2409 38 1 -0.2722 -0.9526 3.5951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709984803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:26 Heat of formation + Delta-G solvation = -118.759486 kcal Electronic energy + Delta-G solvation = -21457.056649 eV Core-core repulsion = 18106.632688 eV Total energy + Delta-G solvation = -3350.423961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.11457 -39.13976 -37.86837 -36.26537 -34.37605 -33.74298 -31.66130 -30.56287 -27.83302 -27.36044 -25.48609 -24.44976 -22.53195 -20.93563 -19.36747 -19.16105 -18.36323 -18.17584 -16.75812 -16.18366 -15.81589 -15.20458 -15.12951 -14.82690 -14.23511 -13.68975 -13.50137 -13.40708 -13.25488 -12.91992 -12.86380 -12.44019 -12.12941 -12.07448 -11.84123 -11.79438 -11.48702 -11.30655 -11.12360 -10.96503 -10.82666 -10.59680 -10.53002 -10.47897 -9.97283 -9.54361 -8.59044 -8.20455 -8.11646 -6.30922 -3.82178 1.99767 2.78076 3.03644 3.07767 3.15850 3.73953 4.06419 4.11421 4.32570 4.32859 4.69818 4.87779 5.03976 5.18118 5.19809 5.22494 5.25283 5.53514 5.57464 5.63120 5.68383 5.74173 5.83625 5.87036 5.88678 5.96624 6.03953 6.10081 6.27091 6.34761 6.46809 6.98362 7.06481 7.58362 7.69553 8.14418 8.60253 8.95293 9.42692 9.83126 10.82150 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033222 B = 0.004371 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.601152 B = 6404.192861 C = 6818.692940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.052 4.052 3 C -0.133 4.133 4 C 0.043 3.957 5 N -0.480 5.480 6 C 0.031 3.969 7 C 0.453 3.547 8 O -0.560 6.560 9 N -0.590 5.590 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.879 3.121 15 H -0.270 1.270 16 H -0.270 1.270 17 H -0.277 1.277 18 C 0.037 3.963 19 C -0.082 4.082 20 H 0.113 0.887 21 C 0.493 3.507 22 O -0.515 6.515 23 O -0.516 6.516 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 2.053 19.628 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.053 4.053 3 C -0.190 4.190 4 C -0.084 4.084 5 N -0.204 5.204 6 C -0.101 4.101 7 C 0.238 3.762 8 O -0.441 6.441 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.705 3.295 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.202 1.202 18 C -0.091 4.091 19 C -0.101 4.101 20 H 0.131 0.869 21 C 0.336 3.664 22 O -0.403 6.403 23 O -0.328 6.328 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -7.178 3.027 18.931 20.471 hybrid contribution -1.227 -2.497 0.410 2.812 sum -8.405 0.530 19.341 21.095 Atomic orbital electron populations 1.22152 0.94157 1.02587 1.02560 1.21277 0.95186 0.96376 0.92494 1.21840 1.02314 0.93225 1.01648 1.23409 0.90221 0.97989 0.96793 1.65230 1.33430 1.21421 1.00303 1.22127 1.01478 0.92708 0.93794 1.19562 0.84215 0.87108 0.85276 1.90531 1.54976 1.15534 1.83107 1.42208 1.64339 1.07092 1.09351 1.19426 1.44853 0.96688 0.82323 0.86233 1.25029 0.97515 0.98464 0.95086 1.69621 1.47014 1.35015 1.00484 0.86686 0.78854 0.85404 0.78550 1.19564 1.19529 1.20183 1.23185 0.98532 0.95375 0.92017 1.21939 0.93295 0.99253 0.95644 0.86855 1.23290 0.83404 0.81868 0.77846 1.90711 1.58053 1.23069 1.68493 1.84578 1.52415 1.53075 1.42700 0.92237 0.91227 0.92034 0.91052 0.91903 0.92759 0.86904 0.93948 0.93076 0.88748 0.79696 0.91619 0.91890 0.89287 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 7.29 37.16 0.27 -1.51 16 2 C -0.05 -0.65 1.03 -153.13 -0.16 -0.81 16 3 C -0.13 -1.51 8.23 37.16 0.31 -1.20 16 4 C 0.04 0.69 4.67 -2.18 -0.01 0.68 16 5 N -0.48 -7.72 5.19 -231.41 -1.20 -8.92 16 6 C 0.03 0.53 5.39 -4.98 -0.03 0.50 16 7 C 0.45 10.25 7.43 -10.98 -0.08 10.17 16 8 O -0.56 -14.64 13.99 5.55 0.08 -14.56 16 9 N -0.59 -14.10 5.09 -10.96 -0.06 -14.15 16 10 C -0.30 -8.58 10.16 -14.93 -0.15 -8.74 16 11 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 13 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 14 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.04 0.48 5.99 -2.18 -0.01 0.46 16 19 C -0.08 -0.93 3.21 -90.38 -0.29 -1.22 16 20 H 0.11 1.12 7.71 -51.93 -0.40 0.72 16 21 C 0.49 5.50 5.24 36.01 0.19 5.68 16 22 O -0.52 -7.18 15.71 -18.75 -0.29 -7.47 16 23 O -0.52 -4.25 13.09 -39.25 -0.51 -4.76 16 24 H 0.06 0.59 7.21 -51.92 -0.37 0.22 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.78 7.00 -51.93 -0.36 0.41 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.11 2.13 6.24 -51.93 -0.32 1.80 16 31 H 0.04 0.70 7.62 -51.93 -0.40 0.31 16 32 H 0.05 0.81 7.98 -51.93 -0.41 0.39 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.37 7.82 5.76 -40.82 -0.24 7.59 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.41 1.64 9.10 45.56 0.41 2.06 16 LS Contribution 309.48 15.07 4.66 4.66 Total: -1.00 -33.57 309.48 -5.86 -39.43 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.53 Total: 10.90 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.06 Total: 5.09 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.48 Total: -48.04 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.73 Total: -26.79 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.57 -5.86 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709984803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.331 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds