Wall clock time and date at job start Mon Mar 30 2020 05:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 110.37045 * 2 1 4 4 C 1.54375 * 110.32544 * 237.81708 * 2 1 3 5 5 N 1.48562 * 104.59558 * 217.24845 * 4 2 1 6 6 C 1.46900 * 110.99771 * 159.03777 * 5 4 2 7 7 C 1.50700 * 109.47041 * 61.04211 * 6 5 4 8 8 O 1.21293 * 120.00099 * 5.85655 * 7 6 5 9 9 N 1.34781 * 119.99875 * 185.85590 * 7 6 5 10 10 C 1.37097 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.08003 * 119.99986 * 359.97438 * 10 9 7 12 12 C 1.38954 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99908 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99999 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.46988 * 270.00775 * 14 12 10 16 16 H 1.48500 * 109.46878 * 30.00212 * 14 12 10 17 17 H 1.48498 * 109.46981 * 150.00402 * 14 12 10 18 18 C 1.48556 * 104.22038 * 39.48500 * 5 4 2 19 19 C 1.54262 * 110.32656 * 122.17577 * 2 1 3 20 20 H 1.08994 * 110.32866 * 237.79033 * 19 2 1 21 21 C 1.50707 * 110.32042 * 0.02562 * 19 2 1 22 22 O 1.20824 * 120.00026 * 86.23732 * 21 19 2 23 23 O 1.34227 * 119.99592 * 266.23750 * 21 19 2 24 24 H 1.09008 * 109.46988 * 296.39290 * 1 2 3 25 25 H 1.08995 * 109.46797 * 56.39210 * 1 2 3 26 26 H 1.08996 * 109.47128 * 176.39345 * 1 2 3 27 27 H 1.08999 * 109.47648 * 182.18107 * 3 2 1 28 28 H 1.09001 * 109.47095 * 302.18634 * 3 2 1 29 29 H 1.09003 * 109.47474 * 62.17974 * 3 2 1 30 30 H 1.09005 * 110.41409 * 98.47374 * 4 2 1 31 31 H 1.08999 * 110.40735 * 336.02876 * 4 2 1 32 32 H 1.09002 * 109.47410 * 301.03791 * 6 5 4 33 33 H 1.08996 * 109.47402 * 181.04155 * 6 5 4 34 34 H 0.97004 * 120.00003 * 359.97438 * 9 7 6 35 35 H 0.97002 * 119.99697 * 179.97438 * 13 12 10 36 36 H 1.08998 * 110.41389 * 79.29356 * 18 5 4 37 37 H 1.09002 * 110.41344 * 201.62074 * 18 5 4 38 38 H 0.96703 * 116.99909 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0626 1.4343 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2694 -1.4828 -0.7224 6 6 3.6068 -2.6217 -1.5867 7 6 3.9109 -2.1247 -2.9766 8 8 3.9565 -0.9331 -3.1981 9 7 4.1321 -3.0045 -3.9734 10 6 4.4092 -2.5524 -5.2377 11 1 4.4498 -1.4913 -5.4349 12 6 4.6367 -3.4594 -6.2655 13 7 4.9018 -3.0261 -7.4775 14 14 4.5657 -5.2946 -5.9245 15 1 5.9145 -5.7780 -5.5337 16 1 3.6073 -5.5562 -4.8208 17 1 4.1191 -6.0085 -7.1476 18 6 2.8807 -1.9421 0.6358 19 6 2.0659 -0.7703 1.2244 20 1 2.7082 -0.1267 1.8253 21 6 0.9224 -1.2936 2.0550 22 8 0.4197 -2.3593 1.7877 23 8 0.4624 -0.5757 3.0917 24 1 -0.3633 0.4569 0.9206 25 1 -0.3633 0.5688 -0.8559 26 1 -0.3633 -1.0256 -0.0646 27 1 3.1517 1.4176 -0.0391 28 1 1.6759 1.9655 -0.8697 29 1 1.7394 1.9419 0.9089 30 1 2.3395 -0.0779 -2.0209 31 1 1.3229 -1.4848 -1.5802 32 1 2.7640 -3.3119 -1.6238 33 1 4.4801 -3.1360 -1.1857 34 1 4.0959 -3.9575 -3.7961 35 1 5.0610 -3.6592 -8.1949 36 1 2.2649 -2.8392 0.5721 37 1 3.7671 -2.1327 1.2409 38 1 -0.2722 -0.9526 3.5951 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709984803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:26 Heat of formation + Delta-G solvation = -146.308751 kcal Electronic energy + Delta-G solvation = -21458.251275 eV Core-core repulsion = 18106.632688 eV Total energy + Delta-G solvation = -3351.618587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.05474 -40.52890 -39.31511 -37.05993 -36.09035 -35.23013 -33.74509 -31.60975 -29.24329 -28.33073 -26.85251 -25.97368 -23.71174 -21.97624 -21.27623 -20.26536 -20.06781 -19.07403 -17.86257 -17.49220 -17.09015 -16.76002 -16.37864 -16.22229 -15.64078 -15.16066 -14.96458 -14.51450 -14.44060 -14.34333 -14.12386 -13.94417 -13.43406 -13.31787 -13.06998 -12.92218 -12.67599 -12.43192 -12.41643 -12.29183 -12.08231 -11.98782 -11.77747 -11.59285 -11.48032 -11.39091 -10.38438 -10.24552 -9.47890 -8.41792 -6.02225 1.15219 1.29616 1.34330 1.43032 1.93591 1.99723 2.22017 2.70715 3.13212 3.18193 3.31666 3.47993 3.83246 4.09009 4.11856 4.23260 4.25809 4.30943 4.41950 4.46982 4.62805 4.67114 4.69544 4.82045 4.91667 4.95325 5.01093 5.15218 5.24287 5.42326 5.51581 5.60370 5.76222 5.83453 5.97757 6.58730 6.87520 7.00691 7.38568 7.94901 8.75754 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.033222 B = 0.004371 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.601152 B = 6404.192861 C = 6818.692940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C -0.129 4.129 4 C 0.043 3.957 5 N -0.496 5.496 6 C 0.041 3.959 7 C 0.452 3.548 8 O -0.601 6.601 9 N -0.592 5.592 10 C -0.327 4.327 11 H 0.058 0.942 12 C -0.013 4.013 13 N -0.933 5.933 14 Si 0.962 3.038 15 H -0.255 1.255 16 H -0.236 1.236 17 H -0.275 1.275 18 C 0.040 3.960 19 C -0.080 4.080 20 H 0.135 0.865 21 C 0.504 3.496 22 O -0.546 6.546 23 O -0.506 6.506 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.388 0.612 35 H 0.279 0.721 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 0.151 22.889 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.049 4.049 3 C -0.186 4.186 4 C -0.085 4.085 5 N -0.220 5.220 6 C -0.091 4.091 7 C 0.240 3.760 8 O -0.485 6.485 9 N -0.234 5.234 10 C -0.456 4.456 11 H 0.076 0.924 12 C -0.212 4.212 13 N -0.574 5.574 14 Si 0.782 3.218 15 H -0.180 1.180 16 H -0.159 1.159 17 H -0.200 1.200 18 C -0.088 4.088 19 C -0.099 4.099 20 H 0.153 0.847 21 C 0.347 3.653 22 O -0.436 6.436 23 O -0.319 6.319 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.834 1.139 22.246 23.613 hybrid contribution -1.047 -1.728 -0.577 2.101 sum -8.881 -0.589 21.669 23.426 Atomic orbital electron populations 1.22096 0.93258 1.01920 1.03596 1.21211 0.95821 0.96493 0.91341 1.21801 1.01351 0.92772 1.02682 1.23274 0.90139 0.97463 0.97622 1.65196 1.33722 1.21407 1.01676 1.22070 1.03598 0.93309 0.90087 1.20708 0.81730 0.86452 0.87140 1.90523 1.55968 1.17723 1.84302 1.42041 1.65084 1.08207 1.08072 1.19004 1.47071 0.94431 0.85063 0.92429 1.26064 0.96023 1.04977 0.94098 1.69798 1.48002 1.37646 1.01968 0.85402 0.80297 0.76548 0.79521 1.17965 1.15914 1.19977 1.23244 0.99718 0.95661 0.90156 1.21914 0.93751 0.98816 0.95447 0.84725 1.23048 0.82874 0.81309 0.78034 1.90714 1.58965 1.24467 1.69472 1.84517 1.53174 1.52422 1.41818 0.90246 0.91269 0.93371 0.92401 0.92657 0.90058 0.90819 0.95181 0.91000 0.85586 0.77623 0.91140 0.92342 0.86939 0.71065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 7.29 71.98 0.52 -2.67 16 2 C -0.05 -1.12 1.03 -51.29 -0.05 -1.17 16 3 C -0.13 -2.77 8.23 71.98 0.59 -2.17 16 4 C 0.04 1.39 4.67 86.45 0.40 1.79 16 5 N -0.50 -15.36 5.19 -886.04 -4.60 -19.96 16 6 C 0.04 1.33 5.39 85.56 0.46 1.79 16 7 C 0.45 20.75 7.43 87.66 0.65 21.40 16 8 O -0.60 -33.10 13.99 -3.07 -0.04 -33.14 16 9 N -0.59 -28.41 5.09 -306.97 -1.56 -29.97 16 10 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 11 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.93 -56.55 13.96 21.66 0.30 -56.25 16 14 Si 0.96 39.34 27.74 68.60 1.90 41.25 16 15 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.24 -8.26 6.52 99.48 0.65 -7.62 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 C 0.04 0.91 5.99 86.45 0.52 1.43 16 19 C -0.08 -1.60 3.21 -10.64 -0.03 -1.63 16 20 H 0.13 2.15 7.71 -2.39 -0.02 2.13 16 21 C 0.50 9.65 5.24 71.24 0.37 10.03 16 22 O -0.55 -13.86 15.71 21.97 0.35 -13.52 16 23 O -0.51 -6.33 13.09 -51.39 -0.67 -7.01 16 24 H 0.08 1.35 7.21 -2.38 -0.02 1.34 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.16 7.00 -2.39 -0.02 1.14 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 2.96 6.24 -2.38 -0.01 2.94 16 31 H 0.03 1.02 7.62 -2.39 -0.02 1.00 16 32 H 0.07 2.08 7.98 -2.39 -0.02 2.06 16 33 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 34 H 0.39 15.60 5.76 -92.71 -0.53 15.06 16 35 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 36 H 0.06 1.43 6.66 -2.39 -0.02 1.42 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.05 16 38 H 0.43 1.78 9.10 -74.06 -0.67 1.11 16 Total: -1.00 -78.37 309.48 0.26 -78.11 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.17 Total: 30.37 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 4.76 Total: 10.12 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.86 Total: -106.18 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.37 Total: -53.67 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.90 Total: 41.25 kcal Total: -78.37 0.26 -78.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709984803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.202 kcal (2) G-P(sol) polarization free energy of solvation -78.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds