Wall clock time and date at job start Mon Mar 30 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 O 1.42896 * 109.47385 * 240.00342 * 2 1 3 5 5 C 1.52996 * 109.47149 * 119.99916 * 2 1 3 6 6 H 1.09003 * 110.91702 * 297.55667 * 5 2 1 7 7 C 1.55154 * 111.00595 * 173.65100 * 5 2 1 8 8 C 1.54315 * 102.86480 * 206.22821 * 7 5 2 9 9 N 1.47031 * 107.27358 * 22.52621 * 8 7 5 10 10 C 1.34773 * 125.64612 * 180.96318 * 9 8 7 11 11 O 1.21443 * 119.99990 * 179.69557 * 10 9 8 12 12 C 1.48826 * 120.00080 * 359.42211 * 10 9 8 13 13 O 1.21503 * 120.00383 * 0.27333 * 12 10 9 14 14 N 1.34777 * 120.00107 * 180.27489 * 12 10 9 15 15 C 1.36126 * 120.00159 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99932 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00124 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00252 * 19 17 15 21 21 H 1.48507 * 109.46904 * 209.99915 * 19 17 15 22 22 H 1.48499 * 109.47134 * 329.99737 * 19 17 15 23 23 C 1.47422 * 108.70109 * 0.70431 * 9 8 7 24 24 H 1.08998 * 109.47257 * 300.00048 * 1 2 3 25 25 H 1.09000 * 109.46832 * 60.00277 * 1 2 3 26 26 H 1.08999 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46825 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47522 * 299.99913 * 3 2 1 29 29 H 1.09008 * 109.47334 * 59.99978 * 3 2 1 30 30 H 0.96701 * 114.00381 * 179.97438 * 4 2 1 31 31 H 1.08999 * 110.71711 * 324.79068 * 7 5 2 32 32 H 1.08997 * 110.71804 * 87.88622 * 7 5 2 33 33 H 1.08992 * 109.98718 * 263.05117 * 8 7 5 34 34 H 1.08995 * 109.77166 * 141.88603 * 8 7 5 35 35 H 0.97000 * 120.00140 * 359.97438 * 14 12 10 36 36 H 0.96999 * 120.00271 * 180.02562 * 18 17 15 37 37 H 1.09005 * 110.36722 * 94.93976 * 23 9 8 38 38 H 1.08999 * 110.36620 * 217.25933 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7257 -0.2014 2.1543 7 6 3.5827 -0.8822 1.2077 8 6 3.8216 -2.1300 2.0835 9 7 2.5680 -2.8982 2.1003 10 6 2.3607 -4.0486 2.7711 11 8 1.2782 -4.5963 2.7172 12 6 3.4603 -4.6509 3.5731 13 8 4.5434 -4.1030 3.6271 14 7 3.2547 -5.8042 4.2394 15 6 4.2602 -6.3549 4.9733 16 1 5.2230 -5.8677 5.0213 17 6 4.0471 -7.5491 5.6638 18 7 5.0147 -8.0788 6.3706 19 14 2.3817 -8.3912 5.5814 20 1 2.3620 -9.3383 4.4378 21 1 2.1399 -9.1347 6.8440 22 1 1.3193 -7.3702 5.3970 23 6 1.5736 -2.1983 1.2669 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.9704 -0.7114 -1.2331 31 1 3.9253 -1.0515 0.1869 32 1 4.0732 -0.0090 1.6378 33 1 4.0853 -1.8287 3.0972 34 1 4.6209 -2.7342 1.6543 35 1 2.3899 -6.2416 4.1966 36 1 4.8667 -8.9089 6.8502 37 1 1.5702 -2.6072 0.2565 38 1 0.5820 -2.2777 1.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721864268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:07 Heat of formation + Delta-G solvation = -118.111318 kcal Electronic energy + Delta-G solvation = -21271.855192 eV Core-core repulsion = 17921.459337 eV Total energy + Delta-G solvation = -3350.395855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33896 -39.03167 -37.32117 -36.28260 -34.24336 -32.83529 -31.90374 -30.69095 -29.00109 -27.35532 -26.10653 -24.07749 -22.07860 -21.43084 -20.00474 -19.27678 -18.45368 -17.21994 -16.70364 -16.17641 -15.74963 -15.15032 -15.01581 -14.57684 -14.17842 -13.85875 -13.46171 -13.30192 -13.09702 -12.80564 -12.63732 -12.50702 -12.40240 -12.27185 -12.24646 -12.02722 -11.60541 -11.37379 -11.28005 -10.82764 -10.77043 -10.64936 -10.45928 -10.13641 -10.03676 -9.76032 -8.45362 -8.35105 -8.32830 -6.58267 -3.99875 2.30449 3.04127 3.07208 3.10836 3.13935 3.95087 3.96353 4.13635 4.21228 4.38957 4.60848 4.65201 4.80154 4.98312 5.04554 5.13064 5.31077 5.35482 5.38625 5.49102 5.57849 5.61821 5.63153 5.70441 5.83603 5.86063 5.99129 6.08664 6.15073 6.20150 6.56477 7.27276 7.43544 7.68519 7.88771 8.19190 8.50137 8.74721 9.19885 9.62042 10.51847 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.004146 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.877983 B = 6752.355762 C = 7219.039134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.139 3.861 3 C -0.177 4.177 4 O -0.557 6.557 5 C -0.130 4.130 6 H 0.093 0.907 7 C -0.134 4.134 8 C 0.118 3.882 9 N -0.601 5.601 10 C 0.527 3.473 11 O -0.551 6.551 12 C 0.408 3.592 13 O -0.573 6.573 14 N -0.528 5.528 15 C -0.308 4.308 16 H 0.127 0.873 17 C 0.053 3.947 18 N -0.851 5.851 19 Si 0.875 3.125 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.260 1.260 23 C 0.114 3.886 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.375 0.625 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.383 0.617 36 H 0.281 0.719 37 H 0.077 0.923 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 16.053 -11.199 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.098 3.902 3 C -0.234 4.234 4 O -0.365 6.365 5 C -0.149 4.149 6 H 0.111 0.889 7 C -0.172 4.172 8 C -0.005 4.005 9 N -0.336 5.336 10 C 0.314 3.686 11 O -0.429 6.429 12 C 0.193 3.807 13 O -0.459 6.459 14 N -0.165 5.165 15 C -0.438 4.438 16 H 0.145 0.855 17 C -0.155 4.155 18 N -0.488 5.488 19 Si 0.700 3.300 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.009 4.009 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.224 0.776 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.013 15.792 -11.105 20.540 hybrid contribution -0.525 -0.679 0.252 0.895 sum -7.538 15.112 -10.853 20.075 Atomic orbital electron populations 1.21792 0.92465 1.03257 1.02391 1.21037 0.94868 0.90382 0.83952 1.22478 1.01769 0.96395 1.02792 1.86571 1.26891 1.79497 1.43515 1.23098 0.96213 0.96164 0.99462 0.88902 1.22827 0.95140 0.98651 1.00563 1.22005 0.86482 0.91109 1.00881 1.48121 1.14297 1.23093 1.48069 1.20420 0.88741 0.79853 0.79631 1.90681 1.26903 1.61268 1.64042 1.18738 0.88660 0.85171 0.88161 1.90602 1.25636 1.62619 1.67063 1.41813 1.13992 1.19955 1.40788 1.19543 0.94808 1.05650 1.23770 0.85515 1.25217 0.98264 0.96382 0.95676 1.69438 1.32175 1.19321 1.27843 0.86687 0.83235 0.80765 0.79338 1.18885 1.19529 1.18457 1.22203 0.92936 0.90086 0.95625 0.91075 0.91842 0.91476 0.92013 0.91766 0.91485 0.77618 0.90886 0.89853 0.90275 0.90338 0.78191 0.90803 0.90531 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.64 37.16 0.32 -0.88 16 2 C 0.14 1.19 0.87 -90.62 -0.08 1.11 16 3 C -0.18 -1.19 8.66 37.16 0.32 -0.87 16 4 O -0.56 -5.39 12.07 -35.23 -0.43 -5.81 16 5 C -0.13 -1.31 2.42 -88.47 -0.21 -1.52 16 6 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 7 C -0.13 -1.32 5.52 -24.90 -0.14 -1.45 16 8 C 0.12 1.77 5.48 -3.06 -0.02 1.75 16 9 N -0.60 -10.50 3.33 -171.27 -0.57 -11.07 16 10 C 0.53 11.46 7.89 -11.88 -0.09 11.36 16 11 O -0.55 -12.76 16.72 5.42 0.09 -12.67 16 12 C 0.41 10.07 7.78 -11.88 -0.09 9.97 16 13 O -0.57 -14.92 13.67 5.36 0.07 -14.84 16 14 N -0.53 -13.57 5.06 -11.59 -0.06 -13.63 16 15 C -0.31 -8.66 10.16 -15.14 -0.15 -8.81 16 16 H 0.13 3.94 7.36 -52.49 -0.39 3.55 16 17 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 18 N -0.85 -23.76 13.94 55.53 0.77 -22.99 16 19 Si 0.88 19.58 27.74 -169.99 -4.72 14.87 16 20 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.67 6.53 56.52 0.37 -5.30 16 23 C 0.11 1.58 5.29 -2.53 -0.01 1.56 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.64 7.27 -51.93 -0.38 0.26 16 27 H 0.06 0.37 7.50 -51.92 -0.39 -0.02 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.37 2.65 6.89 45.56 0.31 2.96 16 31 H 0.07 0.60 5.98 -51.93 -0.31 0.28 16 32 H 0.08 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.08 1.29 7.59 -51.93 -0.39 0.90 16 34 H 0.08 1.28 7.67 -51.93 -0.40 0.88 16 35 H 0.38 9.33 5.22 -40.82 -0.21 9.11 16 36 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 37 H 0.08 1.08 7.34 -51.93 -0.38 0.70 16 38 H 0.08 1.09 7.94 -51.93 -0.41 0.67 16 LS Contribution 309.42 15.07 4.66 4.66 Total: -1.00 -31.99 309.42 -5.07 -37.06 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.65 Total: 10.88 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -0.25 Total: 13.55 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.15 Total: -47.68 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.26 Total: -33.33 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.72 Total: 14.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.99 -5.07 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721864268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.050 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds