Wall clock time and date at job start Mon Mar 30 2020 05:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46713 * 2 1 4 4 O 1.42896 * 109.47385 * 240.00342 * 2 1 3 5 5 C 1.52996 * 109.47149 * 119.99916 * 2 1 3 6 6 H 1.09003 * 110.91702 * 297.55667 * 5 2 1 7 7 C 1.55154 * 111.00595 * 173.65100 * 5 2 1 8 8 C 1.54315 * 102.86480 * 206.22821 * 7 5 2 9 9 N 1.47031 * 107.27358 * 22.52621 * 8 7 5 10 10 C 1.34773 * 125.64612 * 180.96318 * 9 8 7 11 11 O 1.21443 * 119.99990 * 179.69557 * 10 9 8 12 12 C 1.48826 * 120.00080 * 359.42211 * 10 9 8 13 13 O 1.21503 * 120.00383 * 0.27333 * 12 10 9 14 14 N 1.34777 * 120.00107 * 180.27489 * 12 10 9 15 15 C 1.36126 * 120.00159 * 180.02562 * 14 12 10 16 16 H 1.08002 * 119.99685 * 359.97438 * 15 14 12 17 17 C 1.39582 * 119.99932 * 179.97438 * 15 14 12 18 18 N 1.31014 * 120.00124 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 90.00252 * 19 17 15 21 21 H 1.48507 * 109.46904 * 209.99915 * 19 17 15 22 22 H 1.48499 * 109.47134 * 329.99737 * 19 17 15 23 23 C 1.47422 * 108.70109 * 0.70431 * 9 8 7 24 24 H 1.08998 * 109.47257 * 300.00048 * 1 2 3 25 25 H 1.09000 * 109.46832 * 60.00277 * 1 2 3 26 26 H 1.08999 * 109.47088 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46825 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47522 * 299.99913 * 3 2 1 29 29 H 1.09008 * 109.47334 * 59.99978 * 3 2 1 30 30 H 0.96701 * 114.00381 * 179.97438 * 4 2 1 31 31 H 1.08999 * 110.71711 * 324.79068 * 7 5 2 32 32 H 1.08997 * 110.71804 * 87.88622 * 7 5 2 33 33 H 1.08992 * 109.98718 * 263.05117 * 8 7 5 34 34 H 1.08995 * 109.77166 * 141.88603 * 8 7 5 35 35 H 0.97000 * 120.00140 * 359.97438 * 14 12 10 36 36 H 0.96999 * 120.00271 * 180.02562 * 18 17 15 37 37 H 1.09005 * 110.36722 * 94.93976 * 23 9 8 38 38 H 1.08999 * 110.36620 * 217.25933 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.7257 -0.2014 2.1543 7 6 3.5827 -0.8822 1.2077 8 6 3.8216 -2.1300 2.0835 9 7 2.5680 -2.8982 2.1003 10 6 2.3607 -4.0486 2.7711 11 8 1.2782 -4.5963 2.7172 12 6 3.4603 -4.6509 3.5731 13 8 4.5434 -4.1030 3.6271 14 7 3.2547 -5.8042 4.2394 15 6 4.2602 -6.3549 4.9733 16 1 5.2230 -5.8677 5.0213 17 6 4.0471 -7.5491 5.6638 18 7 5.0147 -8.0788 6.3706 19 14 2.3817 -8.3912 5.5814 20 1 2.3620 -9.3383 4.4378 21 1 2.1399 -9.1347 6.8440 22 1 1.3193 -7.3702 5.3970 23 6 1.5736 -2.1983 1.2669 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 2.9704 -0.7114 -1.2331 31 1 3.9253 -1.0515 0.1869 32 1 4.0732 -0.0090 1.6378 33 1 4.0853 -1.8287 3.0972 34 1 4.6209 -2.7342 1.6543 35 1 2.3899 -6.2416 4.1966 36 1 4.8667 -8.9089 6.8502 37 1 1.5702 -2.6072 0.2565 38 1 0.5820 -2.2777 1.7125 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721864268.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:07 Heat of formation + Delta-G solvation = -143.578344 kcal Electronic energy + Delta-G solvation = -21272.959525 eV Core-core repulsion = 17921.459337 eV Total energy + Delta-G solvation = -3351.500188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.74280 -40.37665 -39.05890 -37.55904 -36.23352 -34.02794 -33.60944 -31.81374 -30.03076 -28.03857 -28.02262 -25.60462 -23.03826 -22.98375 -21.28808 -20.79175 -20.15402 -18.38761 -18.19755 -17.80398 -16.95063 -16.91640 -16.43668 -15.70787 -15.46074 -15.05128 -15.00056 -14.84407 -14.51747 -14.38600 -14.06297 -13.89181 -13.30960 -13.14823 -13.10868 -12.97270 -12.77124 -12.58123 -12.55804 -12.33765 -12.21177 -12.00968 -11.77640 -11.67840 -11.35605 -10.82950 -10.49390 -10.28018 -9.81644 -8.64258 -6.17751 0.47265 1.26775 1.30575 1.36485 1.55865 2.08204 2.23337 2.83530 3.04080 3.28120 3.45849 3.50331 3.74557 3.80380 4.09738 4.21049 4.27684 4.32888 4.46273 4.64255 4.79111 4.83658 4.88997 4.94521 4.97382 5.02933 5.11853 5.20566 5.23945 5.26365 5.39268 5.41666 5.71753 6.08761 6.26360 6.52996 6.79338 6.88473 7.12224 7.59510 8.50211 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041851 B = 0.004146 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.877983 B = 6752.355762 C = 7219.039134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.143 3.857 3 C -0.173 4.173 4 O -0.573 6.573 5 C -0.117 4.117 6 H 0.102 0.898 7 C -0.118 4.118 8 C 0.109 3.891 9 N -0.592 5.592 10 C 0.527 3.473 11 O -0.567 6.567 12 C 0.409 3.591 13 O -0.591 6.591 14 N -0.534 5.534 15 C -0.338 4.338 16 H 0.080 0.920 17 C 0.013 3.987 18 N -0.891 5.891 19 Si 0.946 3.054 20 H -0.252 1.252 21 H -0.255 1.255 22 H -0.251 1.251 23 C 0.108 3.892 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.385 0.615 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.391 0.609 36 H 0.291 0.709 37 H 0.078 0.922 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 17.693 -12.475 23.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.102 3.898 3 C -0.230 4.230 4 O -0.383 6.383 5 C -0.137 4.137 6 H 0.120 0.880 7 C -0.156 4.156 8 C -0.013 4.013 9 N -0.325 5.325 10 C 0.312 3.688 11 O -0.448 6.448 12 C 0.194 3.806 13 O -0.477 6.477 14 N -0.173 5.173 15 C -0.467 4.467 16 H 0.098 0.902 17 C -0.193 4.193 18 N -0.528 5.528 19 Si 0.766 3.234 20 H -0.176 1.176 21 H -0.178 1.178 22 H -0.175 1.175 23 C -0.013 4.013 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.236 0.764 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.610 17.472 -12.399 23.090 hybrid contribution 0.071 -1.051 0.568 1.197 sum -8.538 16.421 -11.831 21.966 Atomic orbital electron populations 1.21856 0.92575 1.02534 1.03376 1.21057 0.94853 0.91254 0.82632 1.22437 1.02489 0.94646 1.03428 1.86565 1.28053 1.79807 1.43832 1.23105 0.96076 0.93479 1.00995 0.87985 1.22828 0.95215 0.96695 1.00849 1.22188 0.85080 0.92857 1.01225 1.48255 1.16209 1.21602 1.46396 1.19758 0.87505 0.81274 0.80276 1.90665 1.26869 1.62246 1.64994 1.19480 0.89273 0.84581 0.87301 1.90584 1.26846 1.62998 1.67305 1.41699 1.13789 1.20532 1.41248 1.19165 0.94083 1.07014 1.26422 0.90229 1.26034 1.02556 0.96279 0.94385 1.69537 1.34575 1.20178 1.28554 0.85624 0.77740 0.79758 0.80309 1.17639 1.17839 1.17547 1.22479 0.91879 0.92303 0.94602 0.89682 0.91384 0.93051 0.90882 0.91506 0.90546 0.76373 0.88641 0.87003 0.91862 0.91969 0.77285 0.89894 0.90431 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.64 71.98 0.62 -1.48 16 2 C 0.14 1.99 0.87 -10.79 -0.01 1.98 16 3 C -0.17 -1.63 8.66 71.98 0.62 -1.00 16 4 O -0.57 -9.37 12.07 -148.98 -1.80 -11.17 16 5 C -0.12 -2.01 2.42 -9.40 -0.02 -2.03 16 6 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 7 C -0.12 -1.95 5.52 31.78 0.18 -1.77 16 8 C 0.11 3.16 5.48 86.72 0.48 3.63 16 9 N -0.59 -20.25 3.33 -814.09 -2.71 -22.96 16 10 C 0.53 22.95 7.89 87.08 0.69 23.64 16 11 O -0.57 -26.07 16.72 -3.54 -0.06 -26.13 16 12 C 0.41 20.68 7.78 87.08 0.68 21.36 16 13 O -0.59 -31.90 13.67 -3.72 -0.05 -31.95 16 14 N -0.53 -28.09 5.06 -308.87 -1.56 -29.65 16 15 C -0.34 -19.78 10.16 84.35 0.86 -18.92 16 16 H 0.08 5.31 7.36 -2.91 -0.02 5.28 16 17 C 0.01 0.69 5.51 85.14 0.47 1.16 16 18 N -0.89 -51.01 13.94 21.76 0.30 -50.71 16 19 Si 0.95 40.15 27.74 68.60 1.90 42.05 16 20 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.25 -10.25 6.53 99.48 0.65 -9.60 16 23 C 0.11 2.82 5.29 86.86 0.46 3.28 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.89 7.27 -2.39 -0.02 0.88 16 27 H 0.07 0.54 7.50 -2.38 -0.02 0.52 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.39 4.11 6.89 -74.06 -0.51 3.60 16 31 H 0.10 1.19 5.98 -2.39 -0.01 1.17 16 32 H 0.11 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.06 2.05 7.59 -2.39 -0.02 2.03 16 34 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 35 H 0.39 19.06 5.22 -92.71 -0.48 18.58 16 36 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 37 H 0.08 2.06 7.34 -2.38 -0.02 2.04 16 38 H 0.07 1.94 7.94 -2.39 -0.02 1.92 16 Total: -1.00 -72.07 309.42 1.08 -70.99 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.04 Total: 29.68 kcal Atomic # 6 Polarization: 24.83 SS G_CDS: 5.01 Total: 29.84 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.97 Total: -103.31 kcal Atomic # 8 Polarization: -67.34 SS G_CDS: -1.91 Total: -69.25 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.90 Total: 42.05 kcal Total: -72.07 1.08 -70.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721864268.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.593 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds