Wall clock time and date at job start Mon Mar 30 2020 04:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34231 * 116.99983 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00142 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00053 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.73671 * 179.34726 * 6 4 3 8 8 H 1.08991 * 109.47530 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.47036 * 59.99484 * 7 6 4 10 10 C 1.50700 * 109.46818 * 300.00299 * 7 6 4 11 11 H 1.08000 * 120.00316 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00044 * 179.97438 * 10 7 6 13 13 N 1.31518 * 119.99836 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 120.00284 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.46867 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47516 * 120.00160 * 14 12 10 17 17 H 1.48501 * 109.47317 * 240.00186 * 14 12 10 18 18 C 1.53368 * 109.73645 * 300.00184 * 6 4 3 19 19 O 1.42886 * 109.27564 * 67.39337 * 18 6 4 20 20 C 1.42888 * 114.49970 * 64.93388 * 19 18 6 21 21 C 1.53358 * 109.27668 * 295.06690 * 20 19 18 22 22 C 1.51506 * 108.09887 * 52.25507 * 21 20 19 23 23 O 1.20761 * 121.21720 * 131.58047 * 22 21 20 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 29 29 H 1.09000 * 109.47152 * 300.00805 * 9 7 6 30 30 H 1.08999 * 109.46514 * 60.00459 * 9 7 6 31 31 H 1.08997 * 109.46998 * 180.02562 * 9 7 6 32 32 H 0.96995 * 119.99856 * 179.97438 * 13 12 10 33 33 H 1.08999 * 109.50125 * 187.33540 * 18 6 4 34 34 H 1.09003 * 109.50298 * 307.44890 * 18 6 4 35 35 H 1.09005 * 109.50688 * 55.00695 * 20 19 18 36 36 H 1.08999 * 109.50530 * 175.12448 * 20 19 18 37 37 H 1.09002 * 109.73877 * 171.90769 * 21 20 19 38 38 H 1.09003 * 109.73579 * 292.60488 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4488 2.8645 0.0181 8 1 5.8608 3.8736 0.0180 9 6 5.9374 2.1146 -1.2229 10 6 5.9032 2.1359 1.2565 11 1 5.1749 1.7626 1.9613 12 6 7.2487 1.9459 1.4900 13 7 8.1356 2.4000 0.6315 14 14 7.8120 1.0434 3.0254 15 1 6.6273 0.6370 3.8233 16 1 8.5841 -0.1635 2.6350 17 1 8.6723 1.9397 3.8388 18 6 3.4520 3.6923 -1.2490 19 8 2.0438 3.9189 -1.1629 20 6 1.6466 4.7815 -0.0952 21 6 1.9740 4.1119 1.2451 22 6 3.4300 3.6936 1.2190 23 8 4.1723 3.9533 2.1353 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 5.5254 1.1055 -1.2232 30 1 5.6087 2.6416 -2.1186 31 1 7.0260 2.0623 -1.2106 32 1 9.0821 2.2666 0.7959 33 1 3.9713 4.6485 -1.3127 34 1 3.6716 3.0985 -2.1363 35 1 2.1850 5.7263 -0.1711 36 1 0.5743 4.9670 -0.1570 37 1 1.8083 4.8174 2.0592 38 1 1.3415 3.2349 1.3826 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821974112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:33 Heat of formation + Delta-G solvation = -158.799871 kcal Electronic energy + Delta-G solvation = -22930.357342 eV Core-core repulsion = 19545.904348 eV Total energy + Delta-G solvation = -3384.452994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77318 -38.95773 -37.37078 -36.35768 -34.31090 -32.01908 -31.41883 -31.19411 -28.38194 -25.57879 -24.28336 -23.52601 -23.08955 -21.41765 -20.07878 -18.76864 -17.16692 -16.70443 -16.11642 -16.00136 -15.69254 -15.49906 -14.68926 -14.54841 -13.98312 -13.84694 -13.54641 -13.25757 -12.85709 -12.73473 -12.53129 -12.14462 -11.84101 -11.72202 -11.45543 -11.31443 -11.11669 -10.87414 -10.74015 -10.48625 -10.39554 -10.22705 -10.14835 -9.80744 -9.53118 -9.20236 -8.78573 -8.57831 -8.17706 -5.84811 -3.82963 2.31330 2.94901 3.28974 3.40970 3.47023 3.53374 3.95302 4.39929 4.58009 4.99335 5.04476 5.09580 5.11453 5.20765 5.25214 5.36716 5.46430 5.49184 5.63860 5.71940 5.75489 5.87203 5.90667 6.02852 6.08210 6.19104 6.29984 6.85613 6.92404 7.14744 7.24310 7.29186 7.74021 7.99509 8.03505 8.16810 8.46472 8.54731 9.07191 9.75616 11.23071 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.019360 B = 0.008230 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.948800 B = 3401.498648 C = 3836.922988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.355 6.355 4 C 0.477 3.523 5 O -0.456 6.456 6 C -0.119 4.119 7 C 0.072 3.928 8 H 0.041 0.959 9 C -0.153 4.153 10 C -0.465 4.465 11 H 0.049 0.951 12 C 0.058 3.942 13 N -0.900 5.900 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.076 3.924 19 O -0.370 6.370 20 C 0.071 3.929 21 C -0.205 4.205 22 C 0.360 3.640 23 O -0.395 6.395 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.003 0.997 31 H 0.088 0.912 32 H 0.257 0.743 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 1.743 -3.640 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.339 6.339 6 C -0.122 4.122 7 C 0.053 3.947 8 H 0.059 0.941 9 C -0.211 4.211 10 C -0.504 4.504 11 H 0.067 0.933 12 C -0.141 4.141 13 N -0.541 5.541 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.213 1.213 18 C 0.000 4.000 19 O -0.288 6.288 20 C -0.006 4.006 21 C -0.243 4.243 22 C 0.229 3.771 23 O -0.262 6.262 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.898 1.472 -3.268 15.323 hybrid contribution 0.602 -0.649 1.060 1.381 sum -14.296 0.823 -2.209 14.489 Atomic orbital electron populations 1.21753 0.93201 1.02281 1.03243 1.22881 0.94847 0.81627 1.02189 1.86586 1.25172 1.30780 1.84778 1.22830 0.79903 0.91739 0.73798 1.90665 1.59491 1.41925 1.41787 1.22366 1.02795 0.90023 0.96999 1.18605 0.81583 0.97958 0.96532 0.94075 1.22122 1.05317 0.99669 0.93964 1.20785 0.91618 1.33881 1.04069 0.93282 1.24770 0.96708 0.96109 0.96519 1.69865 1.00969 1.47636 1.35588 0.86532 0.78454 0.79389 0.83584 1.20154 1.21284 1.21274 1.22806 0.81037 0.99563 0.96644 1.87928 1.22889 1.67979 1.50002 1.22514 1.00941 0.92098 0.85023 1.23066 0.97034 1.03851 1.00370 1.24309 0.89235 0.77246 0.86305 1.90477 1.58327 1.42735 1.34649 0.90900 0.91856 0.91507 0.91810 0.91664 0.92749 0.97794 0.89305 0.93363 0.91342 0.87447 0.92914 0.88173 0.88911 0.87283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.35 -6.07 7.80 -43.85 -0.34 -6.41 16 4 C 0.48 9.91 5.84 36.00 0.21 10.12 16 5 O -0.46 -10.93 12.18 -18.75 -0.23 -11.16 16 6 C -0.12 -2.45 0.29 -156.22 -0.05 -2.50 16 7 C 0.07 1.80 1.42 -91.77 -0.13 1.67 16 8 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 9 C -0.15 -3.75 8.35 37.16 0.31 -3.44 16 10 C -0.47 -13.33 5.43 -34.44 -0.19 -13.52 16 11 H 0.05 1.47 6.69 -52.49 -0.35 1.12 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 13 N -0.90 -26.71 11.32 55.43 0.63 -26.08 16 14 Si 0.89 23.24 29.54 -169.99 -5.02 18.22 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 18 C 0.08 1.27 4.93 37.35 0.18 1.46 16 19 O -0.37 -5.50 9.78 -46.61 -0.46 -5.95 16 20 C 0.07 0.87 6.85 37.34 0.26 1.13 16 21 C -0.21 -2.91 5.94 -27.30 -0.16 -3.08 16 22 C 0.36 7.12 5.69 -28.24 -0.16 6.96 16 23 O -0.39 -9.37 15.31 6.00 0.09 -9.27 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.05 1.37 5.52 -51.93 -0.29 1.08 16 30 H 0.00 0.07 6.66 -51.93 -0.35 -0.28 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 33 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 34 H 0.11 1.74 6.93 -51.93 -0.36 1.38 16 35 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.11 1.50 7.08 -51.93 -0.37 1.13 16 LS Contribution 302.40 15.07 4.56 4.56 Total: -1.00 -33.36 302.40 -5.36 -38.72 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.39 Total: -2.97 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.79 Total: 0.36 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.63 Total: -26.08 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.93 Total: -32.80 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.36 -5.36 -38.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821974112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.077 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds