Wall clock time and date at job start Mon Mar 30 2020 04:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.57536 * 2 1 4 4 O 1.43071 * 109.52582 * 239.83211 * 2 1 3 5 5 C 1.43074 * 113.59542 * 298.05209 * 4 2 1 6 6 C 1.53139 * 109.14896 * 302.04681 * 5 4 2 7 7 O 1.43068 * 109.15541 * 55.31273 * 6 5 4 8 8 C 1.43074 * 113.59108 * 302.04706 * 7 6 5 9 9 H 1.09000 * 109.58123 * 298.01385 * 8 7 6 10 10 C 1.50701 * 109.52772 * 177.84941 * 8 7 6 11 11 O 1.20828 * 119.99892 * 354.77854 * 10 8 7 12 12 O 1.34233 * 120.00253 * 174.49496 * 10 8 7 13 13 C 1.45195 * 116.99972 * 184.23941 * 12 10 8 14 14 C 1.53003 * 109.47082 * 184.16463 * 13 12 10 15 15 C 1.50706 * 115.54683 * 64.68563 * 14 13 12 16 16 H 1.07995 * 119.99321 * 266.45211 * 15 14 13 17 17 C 1.37871 * 120.00077 * 86.44757 * 15 14 13 18 18 N 1.31517 * 120.00199 * 178.56044 * 17 15 14 19 19 Si 1.86808 * 120.00089 * 358.56490 * 17 15 14 20 20 H 1.48493 * 109.47069 * 90.77197 * 19 17 15 21 21 H 1.48493 * 109.47045 * 210.77152 * 19 17 15 22 22 H 1.48501 * 109.47042 * 330.77248 * 19 17 15 23 23 C 1.52997 * 117.50285 * 279.01262 * 14 13 12 24 24 C 1.52998 * 117.50105 * 210.35223 * 14 13 12 25 25 H 1.09000 * 109.46767 * 299.83674 * 1 2 3 26 26 H 1.09001 * 109.46863 * 59.84232 * 1 2 3 27 27 H 1.08998 * 109.46965 * 179.83853 * 1 2 3 28 28 H 1.08998 * 109.52477 * 61.94950 * 5 4 2 29 29 H 1.09004 * 109.52621 * 182.14366 * 5 4 2 30 30 H 1.09004 * 109.52269 * 175.21621 * 6 5 4 31 31 H 1.09003 * 109.52763 * 295.40707 * 6 5 4 32 32 H 1.08998 * 109.47446 * 304.16602 * 13 12 10 33 33 H 1.09005 * 109.47271 * 64.17270 * 13 12 10 34 34 H 0.96997 * 120.00215 * 180.02562 * 18 17 15 35 35 H 1.08998 * 117.49510 * 0.02562 * 23 14 13 36 36 H 1.08998 * 117.49850 * 145.01505 * 23 14 13 37 37 H 1.08998 * 117.49765 * 214.98147 * 24 14 13 38 38 H 1.09004 * 117.49552 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6776 -1.1658 5 6 1.6185 -2.0528 -1.2291 6 6 2.1303 -2.7780 0.0188 7 8 1.6521 -2.1005 1.1847 8 6 2.0418 -0.7253 1.2480 9 1 3.1288 -0.6552 1.2900 10 6 1.4483 -0.0897 2.4788 11 8 0.6862 -0.7175 3.1752 12 8 1.7706 1.1720 2.8045 13 6 1.2367 1.6875 4.0524 14 6 1.6216 3.1608 4.2019 15 6 1.0299 4.0943 3.1774 16 1 1.5848 4.3361 2.2831 17 6 -0.2198 4.6395 3.3819 18 7 -0.7243 5.4763 2.5016 19 14 -1.1965 4.1898 4.9095 20 1 -0.8889 5.1546 5.9955 21 1 -2.6482 4.2382 4.6009 22 1 -0.8287 2.8190 5.3464 23 6 3.0284 3.4749 4.7149 24 6 1.8152 3.7000 5.6206 25 1 -0.3633 0.5113 0.8915 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0029 28 1 0.5315 -2.1219 -1.2705 29 1 2.0478 -2.5125 -2.1194 30 1 1.7651 -3.8050 0.0188 31 1 3.2203 -2.7780 0.0189 32 1 0.1507 1.5943 4.0491 33 1 1.6478 1.1183 4.8862 34 1 -1.6034 5.8601 2.6457 35 1 3.6799 2.6320 4.9454 36 1 3.5258 4.3569 4.3115 37 1 1.5149 4.7300 5.8128 38 1 1.6678 3.0052 6.4475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923803785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:35 Heat of formation + Delta-G solvation = -140.299289 kcal Electronic energy + Delta-G solvation = -21842.474069 eV Core-core repulsion = 18458.823321 eV Total energy + Delta-G solvation = -3383.650749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81319 -39.41086 -37.16898 -36.25009 -35.40770 -32.81380 -32.13891 -29.35927 -28.12547 -26.63799 -25.22337 -24.28466 -21.85930 -21.46709 -19.85616 -19.20802 -17.61006 -17.24765 -16.96494 -16.57129 -16.29072 -15.76945 -15.36808 -15.01837 -14.71495 -14.34144 -13.71534 -13.53922 -13.06675 -12.91002 -12.60703 -12.39920 -12.19485 -12.16021 -11.77876 -11.51491 -11.18237 -10.97622 -10.91652 -10.60325 -10.50117 -10.28520 -10.06833 -9.95262 -9.65751 -9.29155 -9.07881 -8.63162 -8.62379 -6.15466 -4.18784 2.46007 2.55697 3.24650 3.35138 3.37274 3.54387 3.89307 4.33756 4.36619 4.68190 4.68806 4.83082 4.92089 4.93419 5.09468 5.19534 5.26884 5.29654 5.43399 5.54810 5.61003 5.77836 5.90628 5.92721 6.02029 6.06432 6.19019 6.26400 6.38334 6.62906 6.73864 6.83281 6.87627 7.03414 7.04014 7.64889 8.16242 8.45825 8.89133 9.46617 10.96101 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.005658 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.857380 B = 4947.706898 C = 5295.885955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.067 3.933 3 H 0.135 0.865 4 O -0.366 6.366 5 C 0.015 3.985 6 C 0.026 3.974 7 O -0.354 6.354 8 C 0.070 3.930 9 H 0.104 0.896 10 C 0.465 3.535 11 O -0.497 6.497 12 O -0.327 6.327 13 C 0.108 3.892 14 C -0.007 4.007 15 C -0.482 4.482 16 H 0.082 0.918 17 C 0.078 3.922 18 N -0.894 5.894 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.261 1.261 23 C -0.172 4.172 24 C -0.190 4.190 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -13.590 -4.343 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.152 0.848 4 O -0.285 6.285 5 C -0.062 4.062 6 C -0.051 4.051 7 O -0.272 6.272 8 C 0.011 3.989 9 H 0.122 0.878 10 C 0.306 3.694 11 O -0.385 6.385 12 O -0.243 6.243 13 C 0.035 3.965 14 C -0.008 4.008 15 C -0.519 4.519 16 H 0.100 0.900 17 C -0.125 4.125 18 N -0.531 5.531 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.186 1.186 23 C -0.209 4.209 24 C -0.227 4.227 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.286 -13.610 -4.156 15.180 hybrid contribution -0.761 -0.304 0.970 1.270 sum 4.525 -13.914 -3.186 14.974 Atomic orbital electron populations 1.22357 0.94582 1.03040 1.04051 1.22795 0.95477 0.97520 0.83319 0.84779 1.88199 1.75847 1.22373 1.42049 1.23296 1.00880 0.83196 0.98786 1.23344 0.99543 0.97027 0.85168 1.88159 1.76333 1.20361 1.42386 1.22059 1.00170 0.83954 0.92699 0.87831 1.22660 0.79573 0.81398 0.85730 1.90646 1.32823 1.63342 1.51694 1.86510 1.68528 1.26618 1.42600 1.23137 0.98710 0.94388 0.80261 1.19335 0.96905 0.90518 0.94011 1.20207 1.01928 1.24795 1.05003 0.89985 1.24980 0.97118 0.94160 0.96226 1.69878 1.17790 1.29953 1.35461 0.86945 0.79075 0.79998 0.83821 1.20125 1.21782 1.18557 1.22830 0.91216 1.02249 1.04643 1.23009 1.04388 1.01800 0.93502 0.90704 0.90792 0.91655 0.91537 0.87605 0.87262 0.91796 0.91144 0.93430 0.92464 0.90753 0.89057 0.88693 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 8.62 37.16 0.32 -2.43 16 2 C 0.07 0.97 3.51 -26.65 -0.09 0.87 16 3 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 4 O -0.37 -4.80 10.66 -48.80 -0.52 -5.32 16 5 C 0.02 0.15 6.64 37.23 0.25 0.40 16 6 C 0.03 0.26 7.05 37.23 0.26 0.52 16 7 O -0.35 -5.20 9.54 -62.52 -0.60 -5.80 16 8 C 0.07 1.07 3.06 -27.80 -0.09 0.98 16 9 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 10 C 0.47 8.82 5.81 36.01 0.21 9.03 16 11 O -0.50 -10.71 16.19 -25.45 -0.41 -11.13 16 12 O -0.33 -6.73 10.15 -39.27 -0.40 -7.13 16 13 C 0.11 2.36 4.98 37.16 0.19 2.54 16 14 C -0.01 -0.15 1.06 -155.66 -0.17 -0.32 16 15 C -0.48 -13.07 9.35 -34.44 -0.32 -13.39 16 16 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 18 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 19 Si 0.87 21.28 24.90 -169.99 -4.23 17.04 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.26 -6.08 5.72 56.52 0.32 -5.76 16 23 C -0.17 -3.39 9.96 -26.70 -0.27 -3.66 16 24 C -0.19 -3.89 7.64 -26.70 -0.20 -4.09 16 25 H 0.07 1.31 7.09 -51.93 -0.37 0.94 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.93 6.24 -51.93 -0.32 0.60 16 28 H 0.07 0.66 6.53 -51.93 -0.34 0.32 16 29 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.64 6.43 -51.93 -0.33 1.31 16 33 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 37 H 0.09 2.02 7.32 -51.93 -0.38 1.64 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -31.59 309.83 -6.33 -37.92 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.61 Total: 2.94 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.01 Total: -7.46 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.93 Total: -29.36 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.23 Total: 17.04 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.59 -6.33 -37.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923803785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.375 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds