Wall clock time and date at job start Mon Mar 30 2020 04:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.57536 * 2 1 4 4 O 1.43071 * 109.52582 * 239.83211 * 2 1 3 5 5 C 1.43074 * 113.59542 * 298.05209 * 4 2 1 6 6 C 1.53139 * 109.14896 * 302.04681 * 5 4 2 7 7 O 1.43068 * 109.15541 * 55.31273 * 6 5 4 8 8 C 1.43074 * 113.59108 * 302.04706 * 7 6 5 9 9 H 1.09000 * 109.58123 * 298.01385 * 8 7 6 10 10 C 1.50701 * 109.52772 * 177.84941 * 8 7 6 11 11 O 1.20828 * 119.99892 * 354.77854 * 10 8 7 12 12 O 1.34233 * 120.00253 * 174.49496 * 10 8 7 13 13 C 1.45195 * 116.99972 * 184.23941 * 12 10 8 14 14 C 1.53003 * 109.47082 * 184.16463 * 13 12 10 15 15 C 1.50706 * 115.54683 * 64.68563 * 14 13 12 16 16 H 1.07995 * 119.99321 * 266.45211 * 15 14 13 17 17 C 1.37871 * 120.00077 * 86.44757 * 15 14 13 18 18 N 1.31517 * 120.00199 * 178.56044 * 17 15 14 19 19 Si 1.86808 * 120.00089 * 358.56490 * 17 15 14 20 20 H 1.48493 * 109.47069 * 90.77197 * 19 17 15 21 21 H 1.48493 * 109.47045 * 210.77152 * 19 17 15 22 22 H 1.48501 * 109.47042 * 330.77248 * 19 17 15 23 23 C 1.52997 * 117.50285 * 279.01262 * 14 13 12 24 24 C 1.52998 * 117.50105 * 210.35223 * 14 13 12 25 25 H 1.09000 * 109.46767 * 299.83674 * 1 2 3 26 26 H 1.09001 * 109.46863 * 59.84232 * 1 2 3 27 27 H 1.08998 * 109.46965 * 179.83853 * 1 2 3 28 28 H 1.08998 * 109.52477 * 61.94950 * 5 4 2 29 29 H 1.09004 * 109.52621 * 182.14366 * 5 4 2 30 30 H 1.09004 * 109.52269 * 175.21621 * 6 5 4 31 31 H 1.09003 * 109.52763 * 295.40707 * 6 5 4 32 32 H 1.08998 * 109.47446 * 304.16602 * 13 12 10 33 33 H 1.09005 * 109.47271 * 64.17270 * 13 12 10 34 34 H 0.96997 * 120.00215 * 180.02562 * 18 17 15 35 35 H 1.08998 * 117.49510 * 0.02562 * 23 14 13 36 36 H 1.08998 * 117.49850 * 145.01505 * 23 14 13 37 37 H 1.08998 * 117.49765 * 214.98147 * 24 14 13 38 38 H 1.09004 * 117.49552 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6776 -1.1658 5 6 1.6185 -2.0528 -1.2291 6 6 2.1303 -2.7780 0.0188 7 8 1.6521 -2.1005 1.1847 8 6 2.0418 -0.7253 1.2480 9 1 3.1288 -0.6552 1.2900 10 6 1.4483 -0.0897 2.4788 11 8 0.6862 -0.7175 3.1752 12 8 1.7706 1.1720 2.8045 13 6 1.2367 1.6875 4.0524 14 6 1.6216 3.1608 4.2019 15 6 1.0299 4.0943 3.1774 16 1 1.5848 4.3361 2.2831 17 6 -0.2198 4.6395 3.3819 18 7 -0.7243 5.4763 2.5016 19 14 -1.1965 4.1898 4.9095 20 1 -0.8889 5.1546 5.9955 21 1 -2.6482 4.2382 4.6009 22 1 -0.8287 2.8190 5.3464 23 6 3.0284 3.4749 4.7149 24 6 1.8152 3.7000 5.6206 25 1 -0.3633 0.5113 0.8915 26 1 -0.3633 0.5163 -0.8886 27 1 -0.3633 -1.0276 -0.0029 28 1 0.5315 -2.1219 -1.2705 29 1 2.0478 -2.5125 -2.1194 30 1 1.7651 -3.8050 0.0188 31 1 3.2203 -2.7780 0.0189 32 1 0.1507 1.5943 4.0491 33 1 1.6478 1.1183 4.8862 34 1 -1.6034 5.8601 2.6457 35 1 3.6799 2.6320 4.9454 36 1 3.5258 4.3569 4.3115 37 1 1.5149 4.7300 5.8128 38 1 1.6678 3.0052 6.4475 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923803785.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:34 Heat of formation + Delta-G solvation = -161.050035 kcal Electronic energy + Delta-G solvation = -21843.373889 eV Core-core repulsion = 18458.823321 eV Total energy + Delta-G solvation = -3384.550568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08604 -40.73314 -38.82352 -37.41849 -36.91946 -34.26182 -33.89901 -30.33058 -29.57176 -28.20110 -27.12699 -25.26717 -23.41650 -22.83514 -21.07519 -20.99570 -18.96555 -18.74763 -18.23083 -18.04871 -17.49777 -17.18347 -16.94425 -16.34447 -16.08100 -15.74040 -15.12181 -14.79682 -14.60412 -14.42476 -14.22898 -13.91276 -13.64184 -13.41018 -13.08416 -12.81671 -12.76041 -12.62053 -12.29728 -12.08204 -12.00336 -11.76076 -11.70476 -11.53447 -11.18643 -10.93913 -10.67010 -10.39928 -10.28754 -8.30880 -6.37665 0.98976 1.21370 1.31564 1.36476 1.45296 2.33243 2.53752 2.77423 3.02090 3.15829 3.24825 3.59450 3.64059 3.91850 3.95562 4.01161 4.13341 4.18421 4.19498 4.27751 4.36932 4.41120 4.46786 4.57169 4.70143 4.78579 4.82765 4.88711 5.01381 5.04121 5.18811 5.44268 5.46094 5.65192 5.76381 5.89323 6.29760 6.63992 6.71325 7.31140 8.84409 Molecular weight = 270.13amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.005658 C = 0.005286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.857380 B = 4947.706898 C = 5295.885955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.124 0.876 4 O -0.372 6.372 5 C 0.008 3.992 6 C 0.020 3.980 7 O -0.377 6.377 8 C 0.079 3.921 9 H 0.129 0.871 10 C 0.465 3.535 11 O -0.526 6.526 12 O -0.337 6.337 13 C 0.112 3.888 14 C -0.041 4.041 15 C -0.479 4.479 16 H 0.038 0.962 17 C 0.024 3.976 18 N -0.944 5.944 19 Si 0.928 3.072 20 H -0.258 1.258 21 H -0.298 1.298 22 H -0.243 1.243 23 C -0.151 4.151 24 C -0.180 4.180 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.266 0.734 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -15.755 -3.480 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.142 0.858 4 O -0.291 6.291 5 C -0.068 4.068 6 C -0.055 4.055 7 O -0.297 6.297 8 C 0.020 3.980 9 H 0.146 0.854 10 C 0.308 3.692 11 O -0.416 6.416 12 O -0.253 6.253 13 C 0.039 3.961 14 C -0.042 4.042 15 C -0.516 4.516 16 H 0.056 0.944 17 C -0.174 4.174 18 N -0.583 5.583 19 Si 0.753 3.247 20 H -0.183 1.183 21 H -0.226 1.226 22 H -0.166 1.166 23 C -0.188 4.188 24 C -0.217 4.217 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.158 0.842 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.577 -15.792 -3.295 17.421 hybrid contribution -1.083 0.299 0.552 1.252 sum 5.494 -15.493 -2.742 16.666 Atomic orbital electron populations 1.22313 0.95456 1.03173 1.02753 1.22589 0.94698 0.97371 0.83968 0.85850 1.88197 1.75776 1.24178 1.40922 1.23609 1.01231 0.81583 1.00350 1.23696 1.00744 0.97711 0.83375 1.88133 1.77081 1.19755 1.44683 1.22042 1.00996 0.84439 0.90553 0.85404 1.23430 0.78867 0.80495 0.86448 1.90619 1.34187 1.63768 1.53002 1.86517 1.68549 1.27801 1.42424 1.22926 0.97535 0.94025 0.81643 1.19235 0.99916 0.90312 0.94746 1.20333 1.01583 1.25065 1.04659 0.94366 1.25760 0.98270 0.94145 0.99210 1.70021 1.18410 1.32021 1.37867 0.86055 0.77013 0.80979 0.80673 1.18319 1.22551 1.16624 1.22891 0.90276 1.02994 1.02664 1.23083 1.03949 1.01824 0.92816 0.93929 0.90065 0.90802 0.91704 0.84162 0.84548 0.90089 0.93465 0.90842 0.92537 0.87520 0.89566 0.89658 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.47 8.62 71.98 0.62 -4.85 16 2 C 0.07 2.06 3.51 30.65 0.11 2.16 16 3 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 4 O -0.37 -9.06 10.66 -136.00 -1.45 -10.51 16 5 C 0.01 0.14 6.64 72.03 0.48 0.62 16 6 C 0.02 0.34 7.05 72.03 0.51 0.85 16 7 O -0.38 -10.36 9.54 -122.88 -1.17 -11.53 16 8 C 0.08 2.29 3.06 29.90 0.09 2.38 16 9 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 10 C 0.46 17.46 5.81 71.24 0.41 17.87 16 11 O -0.53 -22.57 16.19 28.36 0.46 -22.11 16 12 O -0.34 -13.83 10.15 -51.44 -0.52 -14.35 16 13 C 0.11 4.76 4.98 71.98 0.36 5.12 16 14 C -0.04 -1.84 1.06 -52.93 -0.06 -1.90 16 15 C -0.48 -26.69 9.35 25.60 0.24 -26.45 16 16 H 0.04 2.39 8.06 -2.91 -0.02 2.37 16 17 C 0.02 1.38 5.47 84.65 0.46 1.84 16 18 N -0.94 -58.23 13.96 21.45 0.30 -57.93 16 19 Si 0.93 43.91 24.90 68.60 1.71 45.62 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.24 -10.69 5.72 99.48 0.57 -10.12 16 23 C -0.15 -5.58 9.96 30.62 0.30 -5.28 16 24 C -0.18 -6.85 7.64 30.62 0.23 -6.62 16 25 H 0.04 1.55 7.09 -2.39 -0.02 1.54 16 26 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 2.07 6.24 -2.39 -0.01 2.06 16 28 H 0.06 1.14 6.53 -2.39 -0.02 1.12 16 29 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 2.19 6.43 -2.39 -0.02 2.18 16 33 H 0.07 2.72 8.10 -2.38 -0.02 2.70 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.08 3.43 7.32 -2.39 -0.02 3.41 16 38 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -70.61 309.83 4.00 -66.61 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.91 Total: 18.44 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 3.76 Total: -14.25 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.30 Total: -57.93 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.68 Total: -58.49 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.71 Total: 45.62 kcal Total: -70.61 4.00 -66.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923803785.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.438 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds