Wall clock time and date at job start Mon Mar 30 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50950 * 2 1 4 4 C 1.52875 * 109.62875 * 240.00982 * 2 1 3 5 5 N 1.47152 * 108.61136 * 187.89789 * 4 2 1 6 6 C 1.34779 * 120.97886 * 230.49910 * 5 4 2 7 7 O 1.21443 * 119.99701 * 180.93231 * 6 5 4 8 8 C 1.48830 * 120.00135 * 0.93942 * 6 5 4 9 9 O 1.21498 * 120.00167 * 353.48959 * 8 6 5 10 10 N 1.34774 * 119.99706 * 173.48935 * 8 6 5 11 11 C 1.36118 * 119.99998 * 180.02562 * 10 8 6 12 12 H 1.08001 * 119.99883 * 359.97438 * 11 10 8 13 13 C 1.39584 * 120.00422 * 179.72181 * 11 10 8 14 14 N 1.31014 * 120.00610 * 180.27048 * 13 11 10 15 15 Si 1.86800 * 119.99757 * 0.27460 * 13 11 10 16 16 H 1.48499 * 109.47181 * 90.00014 * 15 13 11 17 17 H 1.48497 * 109.47366 * 209.99720 * 15 13 11 18 18 H 1.48503 * 109.47348 * 330.00113 * 15 13 11 19 19 C 1.47149 * 118.03277 * 50.22486 * 5 4 2 20 20 C 1.53294 * 108.38742 * 309.71562 * 19 5 4 21 21 C 1.52992 * 109.51248 * 172.23005 * 20 19 5 22 22 C 1.53005 * 109.51298 * 292.33510 * 20 19 5 23 23 O 1.42962 * 109.51119 * 120.09943 * 2 1 3 24 24 H 1.08998 * 109.47529 * 299.89978 * 1 2 3 25 25 H 1.09005 * 109.46989 * 59.90037 * 1 2 3 26 26 H 1.09006 * 109.46741 * 179.89587 * 1 2 3 27 27 H 1.09001 * 109.61791 * 68.07166 * 4 2 1 28 28 H 1.09005 * 109.52304 * 307.66354 * 4 2 1 29 29 H 0.97000 * 120.00624 * 359.97438 * 10 8 6 30 30 H 0.97000 * 120.00455 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.68541 * 69.44631 * 19 5 4 32 32 H 1.09004 * 109.67613 * 189.96064 * 19 5 4 33 33 H 1.08998 * 109.47290 * 60.00384 * 21 20 19 34 34 H 1.09010 * 109.46979 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47420 * 299.99843 * 21 20 19 36 36 H 1.08997 * 109.47410 * 59.99660 * 22 20 19 37 37 H 1.09000 * 109.46849 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.46584 * 299.99460 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7197 -1.2471 5 7 3.5024 -0.8749 -1.1326 6 6 4.3207 -0.5016 -2.1363 7 8 5.5209 -0.6533 -2.0296 8 6 3.7535 0.0967 -3.3755 9 8 2.5495 0.1404 -3.5329 10 7 4.5754 0.5899 -4.3229 11 6 4.0567 1.1375 -5.4559 12 1 2.9865 1.1764 -5.5959 13 6 4.9077 1.6536 -6.4346 14 7 4.4084 2.1855 -7.5228 15 14 6.7588 1.5859 -6.1928 16 1 7.2855 0.3172 -6.7568 17 1 7.3911 2.7363 -6.8869 18 1 7.0712 1.6502 -4.7424 19 6 4.0417 -1.4439 0.1127 20 6 3.4312 -0.6839 1.2958 21 6 3.8212 -1.3756 2.6035 22 6 3.9528 0.7545 1.3031 23 8 2.0075 -0.6758 1.1658 24 1 -0.3634 0.5123 0.8908 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 -1.0277 -0.0019 27 1 1.8053 -0.1315 -2.1333 28 1 1.5746 -1.7011 -1.3204 29 1 5.5366 0.5554 -4.1970 30 1 4.9998 2.5445 -8.2027 31 1 3.7775 -2.4993 0.1787 32 1 5.1262 -1.3354 0.1263 33 1 4.9068 -1.3853 2.6997 34 1 3.3863 -0.8348 3.4442 35 1 3.4476 -2.3996 2.5983 36 1 3.6731 1.2472 0.3719 37 1 3.5187 1.2941 2.1448 38 1 5.0387 0.7467 1.3981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041680636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:44 Heat of formation + Delta-G solvation = -95.824597 kcal Electronic energy + Delta-G solvation = -21940.856486 eV Core-core repulsion = 18591.427056 eV Total energy + Delta-G solvation = -3349.429430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57411 -38.94363 -37.32786 -35.12376 -34.30961 -33.84875 -32.00439 -30.65696 -27.53354 -27.29346 -26.39338 -25.30233 -22.16950 -21.82553 -19.65069 -19.40833 -18.47520 -16.86956 -16.46226 -16.29510 -15.48358 -15.41422 -14.79522 -14.70560 -14.37288 -13.90179 -13.65224 -13.13924 -13.08746 -12.86453 -12.58105 -12.38393 -12.32419 -12.16396 -11.99819 -11.87428 -11.71398 -11.36501 -11.34658 -10.99867 -10.75148 -10.54145 -10.28808 -10.13398 -9.87759 -9.84279 -8.54220 -8.27507 -8.04261 -6.68899 -4.10694 2.19388 2.97070 3.00327 3.03955 3.07222 3.66557 3.87402 4.02014 4.45036 4.66949 4.82710 4.89443 5.01456 5.10180 5.24374 5.37650 5.41841 5.49311 5.50849 5.56406 5.69760 5.73395 5.81863 5.85736 5.92055 6.02769 6.07832 6.18138 6.27094 6.45942 6.74439 7.16526 7.32354 7.54217 7.81733 8.14749 8.41517 8.64187 9.08486 9.51160 10.40433 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.005391 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.771318 B = 5193.002722 C = 5831.521511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.063 0.937 4 C 0.027 3.973 5 N -0.591 5.591 6 C 0.516 3.484 7 O -0.552 6.552 8 C 0.401 3.599 9 O -0.567 6.567 10 N -0.518 5.518 11 C -0.310 4.310 12 H 0.130 0.870 13 C 0.055 3.945 14 N -0.843 5.843 15 Si 0.875 3.125 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.260 1.260 19 C 0.086 3.914 20 C 0.101 3.899 21 C -0.134 4.134 22 C -0.176 4.176 23 O -0.375 6.375 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.176 0.824 28 H 0.064 0.936 29 H 0.385 0.615 30 H 0.283 0.717 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -3.954 15.561 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.081 0.919 4 C -0.094 4.094 5 N -0.324 5.324 6 C 0.302 3.698 7 O -0.430 6.430 8 C 0.187 3.813 9 O -0.456 6.456 10 N -0.153 5.153 11 C -0.439 4.439 12 H 0.148 0.852 13 C -0.154 4.154 14 N -0.479 5.479 15 Si 0.700 3.300 16 H -0.187 1.187 17 H -0.194 1.194 18 H -0.185 1.185 19 C -0.037 4.037 20 C 0.061 3.939 21 C -0.192 4.192 22 C -0.233 4.233 23 O -0.295 6.295 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.192 0.808 28 H 0.082 0.918 29 H 0.220 0.780 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.490 -3.986 15.408 15.985 hybrid contribution 1.590 0.031 -0.059 1.591 sum 0.100 -3.956 15.349 15.851 Atomic orbital electron populations 1.21679 0.92431 1.02888 1.02622 1.22509 0.95296 0.95960 0.85004 0.91879 1.23958 0.78349 1.03632 1.03506 1.47820 1.07839 1.61718 1.15024 1.20505 0.85985 0.78372 0.84889 1.90664 1.15028 1.56070 1.81242 1.18749 0.87136 0.89622 0.85805 1.90119 1.13661 1.64081 1.77708 1.41845 1.08600 1.48346 1.16478 1.19597 0.97006 1.34533 0.92781 0.85247 1.25249 0.99492 0.95662 0.95016 1.69434 1.36918 1.34280 1.07316 0.86681 0.84008 0.79640 0.79689 1.18741 1.19388 1.18470 1.22299 1.00636 0.97274 0.83506 1.21793 0.81836 0.95235 0.95006 1.21705 1.01446 1.00910 0.95106 1.22368 1.01810 0.96388 1.02747 1.87931 1.19969 1.77420 1.44198 0.92013 0.90381 0.91880 0.80838 0.91790 0.78025 0.90600 0.91035 0.88435 0.90948 0.91537 0.91689 0.91797 0.91819 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.57 37.16 0.36 -1.28 16 2 C 0.07 1.01 3.00 -26.80 -0.08 0.93 16 3 H 0.06 0.94 6.25 -51.93 -0.32 0.62 16 4 C 0.03 0.44 5.63 -3.75 -0.02 0.42 16 5 N -0.59 -10.53 2.55 -173.27 -0.44 -10.97 16 6 C 0.52 10.88 7.76 -11.88 -0.09 10.79 16 7 O -0.55 -12.24 15.96 5.42 0.09 -12.16 16 8 C 0.40 9.47 7.73 -11.88 -0.09 9.38 16 9 O -0.57 -13.98 12.60 5.37 0.07 -13.91 16 10 N -0.52 -12.73 5.05 -11.59 -0.06 -12.79 16 11 C -0.31 -8.34 10.16 -15.15 -0.15 -8.50 16 12 H 0.13 3.86 7.37 -52.49 -0.39 3.47 16 13 C 0.06 1.43 5.51 -17.40 -0.10 1.33 16 14 N -0.84 -22.76 13.94 55.53 0.77 -21.99 16 15 Si 0.88 18.87 27.74 -169.99 -4.72 14.15 16 16 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 18 H -0.26 -5.44 6.52 56.52 0.37 -5.07 16 19 C 0.09 1.27 5.31 -3.54 -0.02 1.25 16 20 C 0.10 1.31 1.11 -90.47 -0.10 1.21 16 21 C -0.13 -1.33 8.85 37.15 0.33 -1.00 16 22 C -0.18 -2.26 8.10 37.16 0.30 -1.96 16 23 O -0.38 -5.33 9.87 -35.23 -0.35 -5.68 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.18 3.37 3.98 -56.38 -0.22 3.14 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.38 8.97 5.23 -40.82 -0.21 8.75 16 30 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.47 7.08 -51.93 -0.37 1.10 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.96 6.11 -51.93 -0.32 0.64 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 306.90 15.07 4.62 4.62 Total: -1.00 -28.95 306.90 -4.91 -33.86 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.23 Total: 12.27 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 0.33 Total: 12.59 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.27 Total: -45.75 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.19 Total: -31.75 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.72 Total: 14.15 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.95 -4.91 -33.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041680636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.966 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds