Wall clock time and date at job start Mon Mar 30 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.50950 * 2 1 4 4 C 1.52875 * 109.62875 * 240.00982 * 2 1 3 5 5 N 1.47152 * 108.61136 * 187.89789 * 4 2 1 6 6 C 1.34779 * 120.97886 * 230.49910 * 5 4 2 7 7 O 1.21443 * 119.99701 * 180.93231 * 6 5 4 8 8 C 1.48830 * 120.00135 * 0.93942 * 6 5 4 9 9 O 1.21498 * 120.00167 * 353.48959 * 8 6 5 10 10 N 1.34774 * 119.99706 * 173.48935 * 8 6 5 11 11 C 1.36118 * 119.99998 * 180.02562 * 10 8 6 12 12 H 1.08001 * 119.99883 * 359.97438 * 11 10 8 13 13 C 1.39584 * 120.00422 * 179.72181 * 11 10 8 14 14 N 1.31014 * 120.00610 * 180.27048 * 13 11 10 15 15 Si 1.86800 * 119.99757 * 0.27460 * 13 11 10 16 16 H 1.48499 * 109.47181 * 90.00014 * 15 13 11 17 17 H 1.48497 * 109.47366 * 209.99720 * 15 13 11 18 18 H 1.48503 * 109.47348 * 330.00113 * 15 13 11 19 19 C 1.47149 * 118.03277 * 50.22486 * 5 4 2 20 20 C 1.53294 * 108.38742 * 309.71562 * 19 5 4 21 21 C 1.52992 * 109.51248 * 172.23005 * 20 19 5 22 22 C 1.53005 * 109.51298 * 292.33510 * 20 19 5 23 23 O 1.42962 * 109.51119 * 120.09943 * 2 1 3 24 24 H 1.08998 * 109.47529 * 299.89978 * 1 2 3 25 25 H 1.09005 * 109.46989 * 59.90037 * 1 2 3 26 26 H 1.09006 * 109.46741 * 179.89587 * 1 2 3 27 27 H 1.09001 * 109.61791 * 68.07166 * 4 2 1 28 28 H 1.09005 * 109.52304 * 307.66354 * 4 2 1 29 29 H 0.97000 * 120.00624 * 359.97438 * 10 8 6 30 30 H 0.97000 * 120.00455 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.68541 * 69.44631 * 19 5 4 32 32 H 1.09004 * 109.67613 * 189.96064 * 19 5 4 33 33 H 1.08998 * 109.47290 * 60.00384 * 21 20 19 34 34 H 1.09010 * 109.46979 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47420 * 299.99843 * 21 20 19 36 36 H 1.08997 * 109.47410 * 59.99660 * 22 20 19 37 37 H 1.09000 * 109.46849 * 180.02562 * 22 20 19 38 38 H 1.09005 * 109.46584 * 299.99460 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0435 -0.7197 -1.2471 5 7 3.5024 -0.8749 -1.1326 6 6 4.3207 -0.5016 -2.1363 7 8 5.5209 -0.6533 -2.0296 8 6 3.7535 0.0967 -3.3755 9 8 2.5495 0.1404 -3.5329 10 7 4.5754 0.5899 -4.3229 11 6 4.0567 1.1375 -5.4559 12 1 2.9865 1.1764 -5.5959 13 6 4.9077 1.6536 -6.4346 14 7 4.4084 2.1855 -7.5228 15 14 6.7588 1.5859 -6.1928 16 1 7.2855 0.3172 -6.7568 17 1 7.3911 2.7363 -6.8869 18 1 7.0712 1.6502 -4.7424 19 6 4.0417 -1.4439 0.1127 20 6 3.4312 -0.6839 1.2958 21 6 3.8212 -1.3756 2.6035 22 6 3.9528 0.7545 1.3031 23 8 2.0075 -0.6758 1.1658 24 1 -0.3634 0.5123 0.8908 25 1 -0.3633 0.5154 -0.8891 26 1 -0.3633 -1.0277 -0.0019 27 1 1.8053 -0.1315 -2.1333 28 1 1.5746 -1.7011 -1.3204 29 1 5.5366 0.5554 -4.1970 30 1 4.9998 2.5445 -8.2027 31 1 3.7775 -2.4993 0.1787 32 1 5.1262 -1.3354 0.1263 33 1 4.9068 -1.3853 2.6997 34 1 3.3863 -0.8348 3.4442 35 1 3.4476 -2.3996 2.5983 36 1 3.6731 1.2472 0.3719 37 1 3.5187 1.2941 2.1448 38 1 5.0387 0.7467 1.3981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041680636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:43 Heat of formation + Delta-G solvation = -116.420185 kcal Electronic energy + Delta-G solvation = -21941.749578 eV Core-core repulsion = 18591.427056 eV Total energy + Delta-G solvation = -3350.322522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.05797 -40.46835 -39.09095 -36.84474 -35.53498 -35.38620 -33.98143 -31.75072 -28.81148 -28.41528 -27.82454 -26.94747 -23.85055 -22.93713 -21.48951 -20.75636 -20.13118 -18.49782 -17.98878 -17.61160 -17.22581 -16.94695 -16.33722 -16.03821 -15.52769 -15.46251 -15.26178 -14.87735 -14.52982 -14.45883 -14.16577 -13.49307 -13.47132 -13.19998 -13.10974 -12.90590 -12.86965 -12.84440 -12.58869 -12.41525 -12.21647 -12.05783 -11.94164 -11.75261 -11.57299 -11.05143 -10.52144 -9.84471 -9.64466 -8.65819 -6.19296 0.42583 1.26763 1.30685 1.35844 1.50511 2.07126 2.19344 2.58668 2.78675 3.02601 3.52200 3.64705 3.76704 3.92237 3.94541 4.05311 4.30682 4.34882 4.51210 4.62148 4.65301 4.73634 4.79427 4.88571 4.91853 5.01787 5.04686 5.16127 5.17992 5.25130 5.30150 5.35912 5.73933 5.99944 6.21178 6.24252 6.55417 6.76304 7.09607 7.58175 8.47974 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.005391 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.771318 B = 5193.002722 C = 5831.521511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.076 3.924 3 H 0.055 0.945 4 C 0.025 3.975 5 N -0.581 5.581 6 C 0.519 3.481 7 O -0.562 6.562 8 C 0.404 3.596 9 O -0.581 6.581 10 N -0.525 5.525 11 C -0.337 4.337 12 H 0.084 0.916 13 C 0.015 3.985 14 N -0.886 5.886 15 Si 0.944 3.056 16 H -0.253 1.253 17 H -0.256 1.256 18 H -0.250 1.250 19 C 0.081 3.919 20 C 0.099 3.901 21 C -0.129 4.129 22 C -0.174 4.174 23 O -0.375 6.375 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.074 0.926 29 H 0.392 0.608 30 H 0.291 0.709 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 -4.797 18.134 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.017 3.983 3 H 0.073 0.927 4 C -0.096 4.096 5 N -0.313 5.313 6 C 0.304 3.696 7 O -0.442 6.442 8 C 0.190 3.810 9 O -0.470 6.470 10 N -0.162 5.162 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.523 5.523 15 Si 0.764 3.236 16 H -0.177 1.177 17 H -0.179 1.179 18 H -0.174 1.174 19 C -0.041 4.041 20 C 0.059 3.941 21 C -0.186 4.186 22 C -0.231 4.231 23 O -0.295 6.295 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.165 0.835 28 H 0.092 0.908 29 H 0.228 0.772 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.370 -4.836 18.004 18.646 hybrid contribution 1.068 0.226 -0.731 1.314 sum 0.697 -4.610 17.273 17.891 Atomic orbital electron populations 1.21678 0.90413 1.03644 1.03463 1.22442 0.96824 0.95043 0.83956 0.92695 1.23860 0.77828 1.03971 1.03920 1.47911 1.08096 1.60140 1.15178 1.19939 0.86067 0.78893 0.84708 1.90654 1.15209 1.56897 1.81419 1.19474 0.87038 0.88108 0.86395 1.90176 1.14515 1.63794 1.78484 1.41735 1.08968 1.49271 1.16210 1.19211 0.95389 1.37223 0.94792 0.89793 1.26030 1.04523 0.94436 0.94070 1.69531 1.39141 1.35268 1.08347 0.85651 0.77295 0.80397 0.80291 1.17693 1.17934 1.17389 1.22639 1.00808 0.98300 0.82358 1.22003 0.81080 0.95342 0.95676 1.21719 1.02695 1.00932 0.93240 1.22365 1.02513 0.96311 1.01945 1.87952 1.20765 1.77235 1.43562 0.90444 0.90318 0.91159 0.83480 0.90771 0.77178 0.89806 0.89440 0.88405 0.89225 0.90510 0.91035 0.94495 0.90272 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.57 71.98 0.69 -2.24 16 2 C 0.08 2.06 3.00 30.55 0.09 2.15 16 3 H 0.06 1.60 6.25 -2.39 -0.01 1.58 16 4 C 0.03 0.83 5.63 86.21 0.49 1.31 16 5 N -0.58 -20.10 2.55 -820.43 -2.09 -22.19 16 6 C 0.52 21.68 7.76 87.08 0.68 22.35 16 7 O -0.56 -24.31 15.96 -3.54 -0.06 -24.36 16 8 C 0.40 19.50 7.73 87.08 0.67 20.18 16 9 O -0.58 -29.74 12.60 -3.71 -0.05 -29.79 16 10 N -0.52 -26.36 5.05 -308.88 -1.56 -27.93 16 11 C -0.34 -18.95 10.16 84.35 0.86 -18.09 16 12 H 0.08 5.37 7.37 -2.91 -0.02 5.35 16 13 C 0.02 0.81 5.51 85.14 0.47 1.28 16 14 N -0.89 -49.23 13.94 21.76 0.30 -48.93 16 15 Si 0.94 38.65 27.74 68.60 1.90 40.55 16 16 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.25 -9.73 6.52 99.48 0.65 -9.08 16 19 C 0.08 2.19 5.31 86.35 0.46 2.65 16 20 C 0.10 2.28 1.11 -10.70 -0.01 2.27 16 21 C -0.13 -2.04 8.85 71.98 0.64 -1.41 16 22 C -0.17 -4.09 8.10 71.98 0.58 -3.50 16 23 O -0.38 -9.66 9.87 -148.98 -1.47 -11.13 16 24 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.08 1.69 8.14 -2.38 -0.02 1.68 16 26 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.15 5.81 3.98 -72.83 -0.29 5.52 16 28 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.39 18.21 5.23 -92.71 -0.49 17.72 16 30 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.70 7.08 -2.39 -0.02 2.69 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 1.06 6.11 -2.39 -0.01 1.04 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -64.01 306.90 2.85 -61.16 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.26 Total: 35.66 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 5.61 Total: 26.95 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.35 Total: -99.04 kcal Atomic # 8 Polarization: -63.71 SS G_CDS: -1.57 Total: -65.29 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -64.01 2.85 -61.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041680636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.256 kcal (2) G-P(sol) polarization free energy of solvation -64.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds