Wall clock time and date at job start Mon Mar 30 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46844 * 110.99866 * 294.21034 * 10 9 7 12 12 C 1.53042 * 109.52315 * 174.16044 * 11 10 9 13 13 C 1.53121 * 109.27764 * 59.17560 * 12 11 10 14 14 C 1.53117 * 109.16405 * 302.34857 * 13 12 11 15 15 H 1.08998 * 109.50073 * 297.71274 * 14 13 12 16 16 C 1.50698 * 109.53658 * 177.61367 * 14 13 12 17 17 O 1.21282 * 119.99953 * 240.17630 * 16 14 13 18 18 N 1.34775 * 119.99938 * 60.17686 * 16 14 13 19 19 C 1.46504 * 120.00058 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47385 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47455 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47059 * 179.97438 * 21 20 19 23 23 C 1.46847 * 110.99892 * 169.99953 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.08998 * 109.46229 * 294.17660 * 11 10 9 28 28 H 1.08995 * 109.46294 * 54.14597 * 11 10 9 29 29 H 1.09000 * 109.50071 * 299.24251 * 12 11 10 30 30 H 1.08995 * 109.53313 * 179.13920 * 12 11 10 31 31 H 1.08994 * 109.52492 * 182.44149 * 13 12 11 32 32 H 1.09006 * 109.57013 * 62.28286 * 13 12 11 33 33 H 0.96998 * 120.00030 * 359.97438 * 18 16 14 34 34 H 1.08997 * 109.47149 * 300.00447 * 19 18 16 35 35 H 1.09005 * 109.46850 * 59.99756 * 19 18 16 36 36 H 1.09003 * 109.46823 * 300.00337 * 20 19 18 37 37 H 1.09004 * 109.46641 * 60.00085 * 20 19 18 38 38 H 1.08993 * 109.46924 * 300.00518 * 21 20 19 39 39 H 1.09005 * 109.46616 * 60.00063 * 21 20 19 40 40 H 0.96696 * 113.99491 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46678 * 305.85465 * 23 10 9 42 42 H 1.08998 * 109.46335 * 65.82627 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9749 -3.6504 -1.2509 12 6 4.0548 -4.7308 -1.1572 13 6 3.3917 -6.0879 -0.9062 14 6 2.5579 -6.0105 0.3757 15 1 3.2109 -5.7986 1.2223 16 6 1.8545 -7.3244 0.5994 17 8 0.6431 -7.3638 0.6441 18 7 2.5715 -8.4556 0.7499 19 6 1.8877 -9.7329 0.9668 20 6 2.9245 -10.8496 1.1043 21 6 2.2103 -12.1835 1.3315 22 8 3.1787 -13.2265 1.4593 23 6 1.5214 -4.8931 0.2375 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.3069 -3.8758 -2.0821 28 1 3.4447 -2.6807 -1.4153 29 1 4.7313 -4.4987 -0.3346 30 1 4.6160 -4.7670 -2.0909 31 1 4.1595 -6.8536 -0.7956 32 1 2.7449 -6.3393 -1.7468 33 1 3.5403 -8.4241 0.7138 34 1 1.2916 -9.6759 1.8776 35 1 1.2362 -9.9448 0.1190 36 1 3.5201 -10.9065 0.1932 37 1 3.5762 -10.6378 1.9520 38 1 1.6150 -12.1263 2.2426 39 1 1.5583 -12.3954 0.4841 40 1 2.7962 -14.1025 1.6053 41 1 0.9354 -4.8259 1.1542 42 1 0.8602 -5.1126 -0.6007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049754113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:20 Heat of formation + Delta-G solvation = -104.004818 kcal Electronic energy + Delta-G solvation = -20750.712375 eV Core-core repulsion = 17536.761318 eV Total energy + Delta-G solvation = -3213.951057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07144 -37.91810 -37.42306 -35.32283 -33.72063 -32.17923 -31.50708 -30.49100 -27.05804 -25.83392 -23.99445 -22.95387 -21.96759 -21.53110 -20.16551 -19.19269 -17.91541 -16.82962 -16.37403 -16.31863 -15.99966 -15.24714 -14.86710 -14.32103 -14.17635 -14.11464 -13.83518 -13.61055 -13.35066 -12.79454 -12.58007 -12.29454 -12.23362 -11.91684 -11.68388 -11.63317 -11.19835 -11.02530 -10.82430 -10.61662 -10.44874 -10.43451 -10.35458 -10.11653 -9.66138 -9.56705 -9.18891 -9.11159 -8.40143 -7.19967 -5.99086 -4.00643 2.72833 2.99662 3.34190 3.39914 3.43111 3.85268 4.44060 4.50204 4.58030 4.76100 4.84851 4.93301 5.02871 5.09378 5.11130 5.24273 5.30522 5.36124 5.50585 5.57849 5.68473 5.75563 5.79658 5.89825 6.12593 6.15777 6.23067 6.29786 6.36855 6.56809 6.71136 6.75407 7.14779 7.35827 7.39473 7.44049 7.83057 8.13187 8.24889 8.26203 8.58873 9.06952 9.63185 11.11819 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047624 B = 0.003018 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.801879 B = 9275.545329 C = 9633.564217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.060 3.940 12 C -0.115 4.115 13 C -0.106 4.106 14 C -0.102 4.102 15 H 0.104 0.896 16 C 0.521 3.479 17 O -0.536 6.536 18 N -0.735 5.735 19 C 0.122 3.878 20 C -0.133 4.133 21 C 0.079 3.921 22 O -0.576 6.576 23 C 0.077 3.923 24 H 0.261 0.739 25 H 0.031 0.969 26 H -0.009 1.009 27 H 0.019 0.981 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.382 0.618 41 H 0.074 0.926 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -22.521 0.563 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.068 4.068 12 C -0.153 4.153 13 C -0.144 4.144 14 C -0.124 4.124 15 H 0.122 0.878 16 C 0.307 3.693 17 O -0.412 6.412 18 N -0.389 5.389 19 C -0.002 4.002 20 C -0.171 4.171 21 C 0.001 3.999 22 O -0.381 6.381 23 C -0.052 4.052 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.009 0.991 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.229 0.771 41 H 0.092 0.908 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.236 -21.833 0.886 23.017 hybrid contribution -0.208 0.281 -0.537 0.641 sum 7.028 -21.551 0.349 22.671 Atomic orbital electron populations 1.69971 1.06067 1.26733 1.50982 1.25010 0.94865 0.99320 0.95538 0.86494 0.79642 0.83129 0.78087 1.20657 1.19885 1.21376 1.21155 0.93451 0.89893 1.50014 0.91829 1.19701 0.90025 0.87107 0.96253 1.62020 1.28018 1.02482 1.33699 1.21978 0.94945 0.99067 0.90804 1.21627 0.98374 0.93876 1.01464 1.21540 0.98267 0.98458 0.96174 1.21384 0.98921 0.91604 1.00494 0.87778 1.20908 0.87771 0.85482 0.75089 1.90701 1.14234 1.86786 1.49474 1.45991 1.10424 1.07072 1.75376 1.21129 0.94711 0.82305 1.02096 1.21686 0.98810 0.92763 1.03810 1.22020 0.90553 0.87295 1.00078 1.86454 1.36319 1.19422 1.95944 1.21721 0.93365 0.88778 1.01307 0.92937 0.95102 0.99077 0.96256 0.89643 0.91137 0.91957 0.92166 0.92048 0.76463 0.91347 0.91432 0.90461 0.90423 0.93165 0.93210 0.77101 0.90796 0.95249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.51 -14.33 8.43 -34.44 -0.29 -14.62 16 8 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 9 C 0.19 5.20 4.72 -4.98 -0.02 5.18 16 10 N -0.54 -11.79 4.65 -236.11 -1.10 -12.89 16 11 C 0.06 1.17 5.30 -3.83 -0.02 1.15 16 12 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 13 C -0.11 -1.36 5.16 -26.61 -0.14 -1.50 16 14 C -0.10 -1.51 2.69 -91.69 -0.25 -1.76 16 15 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 16 C 0.52 7.57 7.16 -10.99 -0.08 7.50 16 17 O -0.54 -10.00 15.98 5.56 0.09 -9.91 16 18 N -0.74 -7.60 5.46 -60.29 -0.33 -7.93 16 19 C 0.12 1.11 5.67 -4.04 -0.02 1.08 16 20 C -0.13 -0.93 5.70 -26.73 -0.15 -1.09 16 21 C 0.08 0.50 7.05 37.16 0.26 0.76 16 22 O -0.58 -4.09 13.66 -35.23 -0.48 -4.57 16 23 C 0.08 1.51 4.03 -3.83 -0.02 1.50 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.89 7.99 -51.92 -0.41 0.48 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 1.78 6.70 -51.93 -0.35 1.43 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 3.10 7.95 -40.82 -0.32 2.77 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.38 0.98 9.12 45.56 0.42 1.39 16 41 H 0.07 1.54 7.99 -51.93 -0.41 1.12 16 42 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -34.33 339.96 -8.45 -42.78 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.48 Total: -0.76 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.99 Total: -2.17 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.69 Total: -47.24 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.39 Total: -14.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.33 -8.45 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.227 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds