Wall clock time and date at job start Mon Mar 30 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46844 * 110.99866 * 294.21034 * 10 9 7 12 12 C 1.53042 * 109.52315 * 174.16044 * 11 10 9 13 13 C 1.53121 * 109.27764 * 59.17560 * 12 11 10 14 14 C 1.53117 * 109.16405 * 302.34857 * 13 12 11 15 15 H 1.08998 * 109.50073 * 297.71274 * 14 13 12 16 16 C 1.50698 * 109.53658 * 177.61367 * 14 13 12 17 17 O 1.21282 * 119.99953 * 240.17630 * 16 14 13 18 18 N 1.34775 * 119.99938 * 60.17686 * 16 14 13 19 19 C 1.46504 * 120.00058 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47385 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.47455 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47059 * 179.97438 * 21 20 19 23 23 C 1.46847 * 110.99892 * 169.99953 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.08998 * 109.46229 * 294.17660 * 11 10 9 28 28 H 1.08995 * 109.46294 * 54.14597 * 11 10 9 29 29 H 1.09000 * 109.50071 * 299.24251 * 12 11 10 30 30 H 1.08995 * 109.53313 * 179.13920 * 12 11 10 31 31 H 1.08994 * 109.52492 * 182.44149 * 13 12 11 32 32 H 1.09006 * 109.57013 * 62.28286 * 13 12 11 33 33 H 0.96998 * 120.00030 * 359.97438 * 18 16 14 34 34 H 1.08997 * 109.47149 * 300.00447 * 19 18 16 35 35 H 1.09005 * 109.46850 * 59.99756 * 19 18 16 36 36 H 1.09003 * 109.46823 * 300.00337 * 20 19 18 37 37 H 1.09004 * 109.46641 * 60.00085 * 20 19 18 38 38 H 1.08993 * 109.46924 * 300.00518 * 21 20 19 39 39 H 1.09005 * 109.46616 * 60.00063 * 21 20 19 40 40 H 0.96696 * 113.99491 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46678 * 305.85465 * 23 10 9 42 42 H 1.08998 * 109.46335 * 65.82627 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9749 -3.6504 -1.2509 12 6 4.0548 -4.7308 -1.1572 13 6 3.3917 -6.0879 -0.9062 14 6 2.5579 -6.0105 0.3757 15 1 3.2109 -5.7986 1.2223 16 6 1.8545 -7.3244 0.5994 17 8 0.6431 -7.3638 0.6441 18 7 2.5715 -8.4556 0.7499 19 6 1.8877 -9.7329 0.9668 20 6 2.9245 -10.8496 1.1043 21 6 2.2103 -12.1835 1.3315 22 8 3.1787 -13.2265 1.4593 23 6 1.5214 -4.8931 0.2375 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.3069 -3.8758 -2.0821 28 1 3.4447 -2.6807 -1.4153 29 1 4.7313 -4.4987 -0.3346 30 1 4.6160 -4.7670 -2.0909 31 1 4.1595 -6.8536 -0.7956 32 1 2.7449 -6.3393 -1.7468 33 1 3.5403 -8.4241 0.7138 34 1 1.2916 -9.6759 1.8776 35 1 1.2362 -9.9448 0.1190 36 1 3.5201 -10.9065 0.1932 37 1 3.5762 -10.6378 1.9520 38 1 1.6150 -12.1263 2.2426 39 1 1.5583 -12.3954 0.4841 40 1 2.7962 -14.1025 1.6053 41 1 0.9354 -4.8259 1.1542 42 1 0.8602 -5.1126 -0.6007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049754113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:20 Heat of formation + Delta-G solvation = -132.616079 kcal Electronic energy + Delta-G solvation = -20751.953052 eV Core-core repulsion = 17536.761318 eV Total energy + Delta-G solvation = -3215.191734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.28418 -39.25747 -38.09809 -36.22779 -35.51983 -33.90497 -32.57394 -31.76177 -29.05273 -26.70282 -25.66816 -24.28087 -23.21772 -22.63002 -21.46309 -20.52504 -18.58758 -18.39478 -17.94747 -17.18136 -17.00789 -16.63223 -16.22888 -15.84421 -15.65767 -15.20934 -15.07487 -14.67190 -14.56184 -14.14817 -14.08586 -13.79118 -13.59095 -13.08039 -12.94708 -12.70867 -12.52864 -12.43235 -12.36747 -12.13496 -12.12294 -11.79036 -11.72221 -11.35650 -11.14635 -10.88457 -10.74382 -10.61753 -10.14236 -9.08024 -8.20983 -6.32363 1.41476 1.44183 1.55131 1.57589 2.05345 2.40750 3.10952 3.24484 3.38993 3.63068 3.80850 3.94646 3.97606 4.09683 4.26236 4.28548 4.35861 4.38661 4.50289 4.62460 4.65053 4.67089 4.76548 4.81732 4.88534 5.03155 5.07367 5.10649 5.13473 5.16286 5.20463 5.30854 5.40803 5.48260 5.64217 6.02365 6.31527 6.50650 6.58542 6.84143 6.88352 7.21418 7.37542 8.90908 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047624 B = 0.003018 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.801879 B = 9275.545329 C = 9633.564217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.207 3.793 10 N -0.537 5.537 11 C 0.055 3.945 12 C -0.104 4.104 13 C -0.100 4.100 14 C -0.093 4.093 15 H 0.122 0.878 16 C 0.523 3.477 17 O -0.586 6.586 18 N -0.713 5.713 19 C 0.122 3.878 20 C -0.123 4.123 21 C 0.077 3.923 22 O -0.595 6.595 23 C 0.079 3.921 24 H 0.264 0.736 25 H -0.003 1.003 26 H -0.045 1.045 27 H 0.006 0.994 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.400 0.600 41 H 0.049 0.951 42 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -23.786 0.438 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.202 4.202 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.080 3.920 10 N -0.261 5.261 11 C -0.073 4.073 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.115 4.115 15 H 0.140 0.860 16 C 0.310 3.690 17 O -0.466 6.466 18 N -0.366 5.366 19 C -0.002 4.002 20 C -0.161 4.161 21 C -0.002 4.002 22 O -0.404 6.404 23 C -0.050 4.050 24 H 0.073 0.927 25 H 0.015 0.985 26 H -0.027 1.027 27 H 0.024 0.976 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.250 0.750 41 H 0.067 0.933 42 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 10.486 -23.165 0.762 25.439 hybrid contribution -1.252 0.593 -0.493 1.471 sum 9.234 -22.571 0.269 24.389 Atomic orbital electron populations 1.70126 1.08043 1.27979 1.51784 1.26049 0.95783 1.03638 0.94732 0.85272 0.78532 0.77631 0.78497 1.19777 1.18292 1.20948 1.21446 0.93793 0.90574 1.50033 0.91173 1.19367 0.90230 0.89409 0.92948 1.61989 1.26629 1.02076 1.35397 1.22107 0.95724 1.00502 0.88928 1.21584 0.96632 0.92397 1.03589 1.21572 0.98864 0.98990 0.94357 1.21273 0.97648 0.89862 1.02684 0.86019 1.20786 0.87092 0.86328 0.74826 1.90694 1.16365 1.87462 1.52109 1.45787 1.11215 1.06329 1.73240 1.21191 0.95291 0.82161 1.01533 1.21578 0.98062 0.92249 1.04174 1.22034 0.90449 0.86896 1.00786 1.86392 1.37212 1.20718 1.96030 1.21673 0.94620 0.89561 0.99098 0.92695 0.98495 1.02712 0.97580 0.91467 0.90113 0.88850 0.87178 0.92761 0.74398 0.92075 0.91975 0.89943 0.90115 0.92544 0.92476 0.75004 0.93261 0.97536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 2 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.52 -30.29 8.43 25.60 0.22 -30.07 16 8 H 0.07 3.91 7.12 -2.91 -0.02 3.89 16 9 C 0.21 11.81 4.72 85.55 0.40 12.21 16 10 N -0.54 -24.39 4.65 -900.92 -4.19 -28.57 16 11 C 0.06 2.14 5.30 86.33 0.46 2.60 16 12 C -0.10 -2.67 6.09 30.65 0.19 -2.49 16 13 C -0.10 -2.23 5.16 30.67 0.16 -2.07 16 14 C -0.09 -2.63 2.69 -11.49 -0.03 -2.66 16 15 H 0.12 3.06 8.14 -2.39 -0.02 3.05 16 16 C 0.52 14.69 7.16 87.66 0.63 15.32 16 17 O -0.59 -22.37 15.98 -3.04 -0.05 -22.42 16 18 N -0.71 -12.95 5.46 -463.06 -2.53 -15.47 16 19 C 0.12 2.00 5.67 86.38 0.49 2.49 16 20 C -0.12 -1.40 5.70 30.59 0.17 -1.23 16 21 C 0.08 0.80 7.05 71.98 0.51 1.31 16 22 O -0.59 -7.10 13.66 -148.98 -2.04 -9.14 16 23 C 0.08 3.25 4.03 86.33 0.35 3.60 16 24 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.00 -0.19 7.99 -2.38 -0.02 -0.21 16 26 H -0.04 -2.81 8.12 -2.39 -0.02 -2.83 16 27 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.07 2.82 6.70 -2.39 -0.02 2.80 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 31 H 0.11 1.46 7.66 -2.39 -0.02 1.44 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.42 4.74 7.95 -92.71 -0.74 4.00 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.40 1.23 9.12 -74.06 -0.68 0.56 16 41 H 0.05 2.21 7.99 -2.39 -0.02 2.19 16 42 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 Total: -1.00 -78.83 339.96 -2.90 -81.73 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -0.41 Total: 6.18 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.00 Total: -0.79 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -6.43 Total: -102.48 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -2.08 Total: -31.56 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -78.83 -2.90 -81.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.890 kcal (2) G-P(sol) polarization free energy of solvation -78.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds