Wall clock time and date at job start Mon Mar 30 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99373 * 2 1 4 4 C 1.50699 * 109.46825 * 269.99940 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.34770 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00541 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99486 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.47113 * 179.97438 * 14 12 2 16 16 C 1.47444 * 110.99673 * 69.87391 * 15 14 12 17 17 C 1.54320 * 107.23382 * 123.25733 * 16 15 14 18 18 C 1.55144 * 103.01531 * 22.28543 * 17 16 15 19 19 H 1.09005 * 110.99284 * 82.43823 * 18 17 16 20 20 C 1.50703 * 110.99227 * 206.21445 * 18 17 16 21 21 O 1.20820 * 119.99721 * 118.54491 * 20 18 17 22 22 O 1.34223 * 119.99979 * 298.55030 * 20 18 17 23 23 C 1.47837 * 111.00207 * 190.71884 * 15 14 12 24 24 H 1.08998 * 109.47520 * 90.00210 * 1 2 3 25 25 H 1.09010 * 109.46689 * 209.99917 * 1 2 3 26 26 H 1.09003 * 109.47452 * 329.99593 * 1 2 3 27 27 H 1.09004 * 109.46958 * 150.00352 * 3 2 1 28 28 H 1.08997 * 109.47731 * 30.00028 * 3 2 1 29 29 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47629 * 300.00004 * 14 12 2 31 31 H 1.09003 * 109.47335 * 60.00360 * 14 12 2 32 32 H 1.08996 * 109.89082 * 242.66332 * 16 15 14 33 33 H 1.09001 * 109.89274 * 3.85607 * 16 15 14 34 34 H 1.09001 * 110.70347 * 140.66329 * 17 16 15 35 35 H 1.08993 * 110.70988 * 263.90957 * 17 16 15 36 36 H 0.96704 * 117.00221 * 179.97438 * 22 20 18 37 37 H 1.08998 * 110.37886 * 332.46374 * 23 15 14 38 38 H 1.09000 * 110.37562 * 94.81084 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1266 2.8776 -1.6728 7 7 3.3453 3.2575 -2.9128 8 14 3.7347 3.9282 -0.2531 9 1 5.1081 3.5061 0.1224 10 1 2.8290 3.7588 0.9116 11 1 3.7504 5.3551 -0.6643 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.0445 -3.6831 1.2901 17 6 2.7981 -5.1028 1.8426 18 6 2.4435 -5.9163 0.5701 19 1 3.3448 -6.2312 0.0441 20 6 1.5788 -7.1025 0.9111 21 8 0.4674 -7.1935 0.4460 22 8 2.0433 -8.0578 1.7316 23 6 1.6536 -4.8726 -0.2585 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 3.1499 1.1386 0.5138 28 1 1.6083 2.0285 0.5138 29 1 3.8227 4.0831 -3.0901 30 1 0.7592 -2.5303 0.8896 31 1 0.7585 -2.5298 -0.8903 32 1 4.1125 -3.5228 1.1428 33 1 2.6481 -2.9415 1.9837 34 1 3.7000 -5.4955 2.3122 35 1 1.9647 -5.1037 2.5451 36 1 1.4521 -8.7992 1.9213 37 1 0.6187 -4.8240 0.0802 38 1 1.6954 -5.1199 -1.3193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062134475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:34 Heat of formation + Delta-G solvation = -107.608376 kcal Electronic energy + Delta-G solvation = -20907.560306 eV Core-core repulsion = 17557.619893 eV Total energy + Delta-G solvation = -3349.940413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.85783 -39.45282 -38.00058 -36.43029 -34.84620 -32.77706 -32.31039 -29.33266 -28.90245 -26.86239 -25.65693 -23.79368 -22.32269 -21.11328 -20.56229 -18.55340 -18.25615 -17.26063 -16.94783 -16.56223 -16.29615 -15.55612 -15.34529 -14.81138 -14.55465 -13.90496 -13.63683 -13.49336 -13.19625 -12.90090 -12.48447 -12.34022 -12.19757 -12.02365 -11.94196 -11.84452 -11.58756 -11.47913 -11.39972 -10.97741 -10.86020 -10.72539 -10.50888 -10.11487 -9.51427 -9.00989 -8.56214 -8.26002 -7.66792 -6.05731 -4.04184 1.85252 2.61618 3.30579 3.35941 3.37306 3.38045 3.66549 3.99133 4.32167 4.33426 4.41780 4.66815 4.96772 5.07549 5.13465 5.17642 5.22608 5.28820 5.47053 5.53664 5.58819 5.59651 5.71373 5.79525 5.89098 6.13228 6.15120 6.15589 6.66078 6.85754 6.90643 6.98868 7.36938 7.54196 7.63962 8.27170 8.50343 8.97091 9.04277 9.54450 11.07846 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.003685 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.933053 B = 7595.852458 C = 7763.592628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.602 5.602 3 C 0.218 3.782 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.267 1.267 11 H -0.285 1.285 12 C 0.508 3.492 13 O -0.521 6.521 14 C 0.034 3.966 15 N -0.508 5.508 16 C 0.052 3.948 17 C -0.129 4.129 18 C -0.095 4.095 19 H 0.126 0.874 20 C 0.491 3.509 21 O -0.514 6.514 22 O -0.514 6.514 23 C 0.060 3.940 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.409 0.591 37 H 0.061 0.939 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -18.951 11.298 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.335 5.335 3 C 0.097 3.903 4 C -0.566 4.566 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.211 1.211 12 C 0.293 3.707 13 O -0.396 6.396 14 C -0.097 4.097 15 N -0.232 5.232 16 C -0.076 4.076 17 C -0.168 4.168 18 C -0.114 4.114 19 H 0.144 0.856 20 C 0.333 3.667 21 O -0.402 6.402 22 O -0.326 6.326 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.079 0.921 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.735 -18.354 10.579 21.708 hybrid contribution -0.810 0.031 1.213 1.459 sum -5.545 -18.323 11.792 22.485 Atomic orbital electron populations 1.21646 0.81080 1.01552 1.01602 1.47841 1.06184 1.07105 1.72414 1.19652 0.92395 0.79899 0.98347 1.21342 1.36818 1.07092 0.91338 0.90765 1.24871 0.95291 0.97374 0.95565 1.69902 1.41533 1.23579 1.18653 0.86838 0.80106 0.79727 0.82905 1.19901 1.19150 1.21110 1.20099 0.88239 0.84572 0.77777 1.90665 1.13546 1.86816 1.48603 1.22262 0.94192 0.90732 1.02560 1.63309 1.26262 1.01490 1.32175 1.22839 1.01611 0.94221 0.88909 1.22849 1.02831 0.95649 0.95428 1.22171 0.99343 0.90583 0.99330 0.85568 1.23249 0.85910 0.82980 0.74584 1.90736 1.21300 1.77265 1.50859 1.84549 1.51117 1.34423 1.62496 1.22963 0.96254 0.86865 1.00688 0.92755 0.92626 0.91382 0.94625 0.95342 0.92594 0.92313 0.88103 0.88961 0.92293 0.89194 0.91160 0.73181 0.92120 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.29 10.28 59.85 0.62 1.91 16 2 N -0.60 -12.37 2.86 -182.95 -0.52 -12.89 16 3 C 0.22 5.35 4.27 -5.19 -0.02 5.33 16 4 C -0.53 -15.35 9.94 -34.44 -0.34 -15.70 16 5 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 8 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 9 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.51 10.27 7.32 -10.99 -0.08 10.19 16 13 O -0.52 -12.70 15.12 5.56 0.08 -12.62 16 14 C 0.03 0.50 3.58 -4.97 -0.02 0.48 16 15 N -0.51 -7.25 4.85 -232.69 -1.13 -8.38 16 16 C 0.05 0.66 5.65 -2.83 -0.02 0.64 16 17 C -0.13 -1.19 6.39 -24.91 -0.16 -1.34 16 18 C -0.09 -0.89 3.54 -89.63 -0.32 -1.21 16 19 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 20 C 0.49 4.65 7.64 36.01 0.27 4.93 16 21 O -0.51 -6.37 16.56 -18.75 -0.31 -6.68 16 22 O -0.51 -3.55 13.41 -39.24 -0.53 -4.07 16 23 C 0.06 0.68 5.75 -2.30 -0.01 0.67 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.64 6.44 -51.92 -0.33 0.30 16 26 H 0.07 0.96 7.89 -51.93 -0.41 0.55 16 27 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 28 H 0.03 0.66 6.95 -51.93 -0.36 0.30 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.06 0.72 7.22 -51.93 -0.38 0.35 16 31 H 0.10 1.37 8.04 -51.93 -0.42 0.96 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 0.78 7.31 -51.93 -0.38 0.40 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.41 1.12 9.10 45.56 0.41 1.53 16 37 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -36.91 316.92 -6.41 -43.32 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.71 Total: -1.14 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.18 Total: 7.89 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.88 Total: -48.50 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.75 Total: -23.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.91 -6.41 -43.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062134475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.289 kcal (2) G-P(sol) polarization free energy of solvation -36.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds