Wall clock time and date at job start Mon Mar 30 2020 05:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99373 * 2 1 4 4 C 1.50699 * 109.46825 * 269.99940 * 3 2 1 5 5 H 1.07999 * 120.00803 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99889 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00186 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00030 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 89.99863 * 8 6 4 10 10 H 1.48503 * 109.47261 * 330.00044 * 8 6 4 11 11 H 1.48500 * 109.47454 * 210.00037 * 8 6 4 12 12 C 1.34770 * 120.00642 * 180.02562 * 2 1 3 13 13 O 1.21277 * 120.00541 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99486 * 359.97438 * 12 2 1 15 15 N 1.46903 * 109.47113 * 179.97438 * 14 12 2 16 16 C 1.47444 * 110.99673 * 69.87391 * 15 14 12 17 17 C 1.54320 * 107.23382 * 123.25733 * 16 15 14 18 18 C 1.55144 * 103.01531 * 22.28543 * 17 16 15 19 19 H 1.09005 * 110.99284 * 82.43823 * 18 17 16 20 20 C 1.50703 * 110.99227 * 206.21445 * 18 17 16 21 21 O 1.20820 * 119.99721 * 118.54491 * 20 18 17 22 22 O 1.34223 * 119.99979 * 298.55030 * 20 18 17 23 23 C 1.47837 * 111.00207 * 190.71884 * 15 14 12 24 24 H 1.08998 * 109.47520 * 90.00210 * 1 2 3 25 25 H 1.09010 * 109.46689 * 209.99917 * 1 2 3 26 26 H 1.09003 * 109.47452 * 329.99593 * 1 2 3 27 27 H 1.09004 * 109.46958 * 150.00352 * 3 2 1 28 28 H 1.08997 * 109.47731 * 30.00028 * 3 2 1 29 29 H 0.96998 * 120.00124 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47629 * 300.00004 * 14 12 2 31 31 H 1.09003 * 109.47335 * 60.00360 * 14 12 2 32 32 H 1.08996 * 109.89082 * 242.66332 * 16 15 14 33 33 H 1.09001 * 109.89274 * 3.85607 * 16 15 14 34 34 H 1.09001 * 110.70347 * 140.66329 * 17 16 15 35 35 H 1.08993 * 110.70988 * 263.90957 * 17 16 15 36 36 H 0.96704 * 117.00221 * 179.97438 * 22 20 18 37 37 H 1.08998 * 110.37886 * 332.46374 * 23 15 14 38 38 H 1.09000 * 110.37562 * 94.81084 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1266 2.8776 -1.6728 7 7 3.3453 3.2575 -2.9128 8 14 3.7347 3.9282 -0.2531 9 1 5.1081 3.5061 0.1224 10 1 2.8290 3.7588 0.9116 11 1 3.7504 5.3551 -0.6643 12 6 2.1390 -1.1671 -0.0005 13 8 3.3518 -1.1670 -0.0010 14 6 1.3855 -2.4722 -0.0005 15 7 2.3401 -3.5888 -0.0018 16 6 3.0445 -3.6831 1.2901 17 6 2.7981 -5.1028 1.8426 18 6 2.4435 -5.9163 0.5701 19 1 3.3448 -6.2312 0.0441 20 6 1.5788 -7.1025 0.9111 21 8 0.4674 -7.1935 0.4460 22 8 2.0433 -8.0578 1.7316 23 6 1.6536 -4.8726 -0.2585 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 3.1499 1.1386 0.5138 28 1 1.6083 2.0285 0.5138 29 1 3.8227 4.0831 -3.0901 30 1 0.7592 -2.5303 0.8896 31 1 0.7585 -2.5298 -0.8903 32 1 4.1125 -3.5228 1.1428 33 1 2.6481 -2.9415 1.9837 34 1 3.7000 -5.4955 2.3122 35 1 1.9647 -5.1037 2.5451 36 1 1.4521 -8.7992 1.9213 37 1 0.6187 -4.8240 0.0802 38 1 1.6954 -5.1199 -1.3193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062134475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:33 Heat of formation + Delta-G solvation = -137.443452 kcal Electronic energy + Delta-G solvation = -20908.854052 eV Core-core repulsion = 17557.619893 eV Total energy + Delta-G solvation = -3351.234159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.65207 -40.77120 -39.13167 -37.11091 -36.54068 -34.71590 -33.56822 -30.74719 -30.19141 -28.11778 -27.15251 -24.79555 -23.97044 -22.18021 -21.35038 -19.95275 -19.14272 -19.05836 -18.06324 -17.87861 -17.37233 -16.97432 -16.51169 -16.18331 -15.90286 -15.33210 -14.88619 -14.50603 -14.42891 -14.18009 -13.96362 -13.75501 -13.60675 -13.42518 -13.18130 -12.77511 -12.73361 -12.57196 -12.50360 -12.40013 -12.30921 -11.99660 -11.82877 -11.73903 -11.49792 -10.82203 -10.60983 -9.38132 -9.30229 -8.32911 -6.38113 1.14295 1.33386 1.38093 1.46371 1.81502 1.94109 2.31802 2.33152 3.01187 3.02417 3.38308 3.48907 3.77696 3.93347 4.16020 4.22146 4.32634 4.38135 4.45780 4.47194 4.62519 4.69090 4.78979 4.82883 4.91480 4.93125 4.95316 4.98233 5.19824 5.47072 5.57970 5.62548 5.86284 5.93916 6.25982 6.63396 6.73439 6.97490 7.22885 7.47909 8.84440 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.041231 B = 0.003685 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.933053 B = 7595.852458 C = 7763.592628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.225 3.775 4 C -0.537 4.537 5 H 0.025 0.975 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.236 1.236 11 H -0.275 1.275 12 C 0.497 3.503 13 O -0.574 6.574 14 C 0.047 3.953 15 N -0.536 5.536 16 C 0.051 3.949 17 C -0.114 4.114 18 C -0.091 4.091 19 H 0.136 0.864 20 C 0.503 3.497 21 O -0.546 6.546 22 O -0.507 6.507 23 C 0.062 3.938 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.019 0.981 28 H 0.051 0.949 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.429 0.571 37 H 0.065 0.935 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -20.042 13.856 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.103 3.897 4 C -0.575 4.575 5 H 0.043 0.957 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.159 1.159 11 H -0.201 1.201 12 C 0.285 3.715 13 O -0.453 6.453 14 C -0.084 4.084 15 N -0.261 5.261 16 C -0.076 4.076 17 C -0.152 4.152 18 C -0.111 4.111 19 H 0.154 0.846 20 C 0.346 3.654 21 O -0.437 6.437 22 O -0.320 6.320 23 C -0.065 4.065 24 H 0.067 0.933 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.291 0.709 37 H 0.083 0.917 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.882 -19.494 13.161 24.245 hybrid contribution -0.468 0.279 0.333 0.638 sum -6.349 -19.215 13.494 24.323 Atomic orbital electron populations 1.21950 0.77715 1.04459 1.02198 1.47974 1.08391 1.05957 1.72091 1.19328 0.92792 0.82474 0.95117 1.21593 1.36709 1.06692 0.92551 0.95670 1.25914 0.95315 0.99017 0.98750 1.70064 1.42781 1.24529 1.21417 0.85659 0.79568 0.77599 0.79745 1.20160 1.15916 1.20058 1.21144 0.88048 0.86159 0.76144 1.90629 1.16058 1.87747 1.50855 1.22156 0.93766 0.87813 1.04640 1.63186 1.27041 1.02480 1.33395 1.22760 1.00070 0.96386 0.88400 1.22754 1.04108 0.93088 0.95288 1.22110 0.99383 0.90404 0.99199 0.84596 1.23051 0.85064 0.83102 0.74211 1.90735 1.22607 1.78069 1.52251 1.84498 1.51465 1.34675 1.61370 1.22925 0.96502 0.86092 1.00998 0.93277 0.88204 0.90073 0.96302 0.93090 0.92290 0.88871 0.86871 0.91289 0.92994 0.87433 0.90009 0.70856 0.91683 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.28 127.77 1.31 3.53 16 2 N -0.61 -24.75 2.86 -851.12 -2.43 -27.19 16 3 C 0.23 11.03 4.27 85.63 0.37 11.40 16 4 C -0.54 -32.20 9.94 25.60 0.25 -31.94 16 5 H 0.02 1.70 8.06 -2.91 -0.02 1.67 16 6 C 0.01 0.46 5.47 84.65 0.46 0.92 16 7 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 8 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.50 20.07 7.32 87.66 0.64 20.71 16 13 O -0.57 -28.81 15.12 -3.02 -0.05 -28.85 16 14 C 0.05 1.31 3.58 85.56 0.31 1.62 16 15 N -0.54 -14.81 4.85 -890.11 -4.32 -19.13 16 16 C 0.05 1.26 5.65 86.65 0.49 1.75 16 17 C -0.11 -1.82 6.39 31.78 0.20 -1.61 16 18 C -0.09 -1.52 3.54 -10.15 -0.04 -1.56 16 19 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 20 C 0.50 8.23 7.64 71.24 0.54 8.78 16 21 O -0.55 -12.42 16.56 21.98 0.36 -12.05 16 22 O -0.51 -5.38 13.41 -51.35 -0.69 -6.07 16 23 C 0.06 1.31 5.75 86.78 0.50 1.81 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.10 1.90 6.44 -2.38 -0.02 1.89 16 26 H 0.08 2.06 7.89 -2.39 -0.02 2.04 16 27 H 0.02 0.99 6.85 -2.39 -0.02 0.97 16 28 H 0.05 2.27 6.95 -2.39 -0.02 2.25 16 29 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 30 H 0.09 1.96 7.22 -2.39 -0.02 1.94 16 31 H 0.11 2.88 8.04 -2.39 -0.02 2.86 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.32 7.31 -2.39 -0.02 1.31 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 36 H 0.43 0.98 9.10 -74.05 -0.67 0.30 16 37 H 0.06 1.33 7.18 -2.39 -0.02 1.31 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -84.07 316.92 0.45 -83.62 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.34 Total: 8.22 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.04 Total: 15.41 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.45 Total: -106.96 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -0.37 Total: -46.98 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -84.07 0.45 -83.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062134475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.819 kcal (2) G-P(sol) polarization free energy of solvation -84.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds