Wall clock time and date at job start Mon Mar 30 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 C 1.50700 * 109.46864 * 120.00548 * 2 1 3 5 5 H 1.08001 * 120.00026 * 120.00505 * 4 2 1 6 6 C 1.37878 * 119.99665 * 299.99456 * 4 2 1 7 7 N 1.31513 * 120.00268 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47380 * 89.99930 * 8 6 4 10 10 H 1.48495 * 109.47020 * 209.99838 * 8 6 4 11 11 H 1.48497 * 109.46843 * 329.99862 * 8 6 4 12 12 N 1.46500 * 109.46872 * 239.99986 * 2 1 3 13 13 C 1.46504 * 120.00296 * 299.99869 * 12 2 1 14 14 C 1.34785 * 119.99747 * 120.00373 * 12 2 1 15 15 O 1.21588 * 120.00084 * 6.40895 * 14 12 2 16 16 N 1.34774 * 119.99854 * 186.40768 * 14 12 2 17 17 C 1.47434 * 125.64694 * 6.11827 * 16 14 12 18 18 C 1.55129 * 104.72008 * 155.81459 * 17 16 14 19 19 C 1.55158 * 101.48936 * 37.29433 * 18 17 16 20 20 C 1.47022 * 125.65140 * 186.42073 * 16 14 12 21 21 H 1.08997 * 109.88128 * 300.44555 * 20 16 14 22 22 C 1.50704 * 109.87848 * 61.60507 * 20 16 14 23 23 O 1.20827 * 120.00160 * 0.02562 * 22 20 16 24 24 O 1.34231 * 119.99764 * 179.97438 * 22 20 16 25 25 H 1.09004 * 109.46833 * 59.99820 * 1 2 3 26 26 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46998 * 300.00049 * 1 2 3 28 28 H 0.96993 * 120.00423 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46476 * 95.74656 * 13 12 2 30 30 H 1.08999 * 109.47098 * 335.75020 * 13 12 2 31 31 H 1.09002 * 109.46967 * 215.74783 * 13 12 2 32 32 H 1.08996 * 110.36582 * 274.73938 * 17 16 14 33 33 H 1.08994 * 110.36647 * 37.06465 * 17 16 14 34 34 H 1.08998 * 111.19201 * 279.18975 * 18 17 16 35 35 H 1.08997 * 110.94000 * 155.28912 * 18 17 16 36 36 H 1.08996 * 110.72262 * 205.97287 * 19 18 17 37 37 H 1.08998 * 110.87122 * 82.76181 * 19 18 17 38 38 H 0.96698 * 116.99688 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.6304 -0.5444 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4877 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1833 1.0891 -1.8358 16 7 3.1357 -0.6273 -3.2448 17 6 2.6335 -1.9265 -3.7280 18 6 2.7959 -1.8633 -5.2695 19 6 4.1343 -1.0907 -5.4078 20 6 4.0766 -0.0870 -4.2370 21 1 3.7232 0.8800 -4.5948 22 6 5.4436 0.0599 -3.6199 23 8 5.6228 -0.2536 -2.4668 24 8 6.4623 0.5382 -4.3515 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7082 1.1608 3.4843 29 1 0.7957 -2.1449 -2.0844 30 1 1.4299 -2.5708 -0.4767 31 1 2.5042 -2.6073 -1.8956 32 1 3.2287 -2.7407 -3.3147 33 1 1.5837 -2.0501 -3.4623 34 1 1.9766 -1.3110 -5.7297 35 1 2.8768 -2.8640 -5.6940 36 1 4.1805 -0.5670 -6.3627 37 1 4.9845 -1.7638 -5.2972 38 1 7.3205 0.6140 -3.9124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:09 Heat of formation + Delta-G solvation = -82.480089 kcal Electronic energy + Delta-G solvation = -22133.194179 eV Core-core repulsion = 18784.343410 eV Total energy + Delta-G solvation = -3348.850769 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74711 -39.24981 -37.20654 -35.89513 -35.26381 -32.99792 -31.29063 -30.10865 -28.66448 -26.56586 -25.14158 -23.92065 -22.35765 -21.59267 -20.19117 -18.90484 -18.02642 -16.97527 -16.57721 -16.24289 -15.82120 -15.43036 -14.99457 -14.51672 -14.24890 -13.69343 -13.45998 -13.23916 -12.80937 -12.69957 -12.37654 -12.11583 -11.99378 -11.81881 -11.51408 -11.33178 -11.03875 -10.97503 -10.76115 -10.66130 -10.40977 -10.26370 -10.16920 -10.08732 -9.27590 -9.05839 -8.48744 -8.34939 -7.39789 -5.99484 -4.05941 2.42492 2.76962 3.30388 3.33084 3.39193 3.41985 3.99099 4.28661 4.41690 4.45336 4.67844 4.78691 5.08750 5.18870 5.31732 5.43436 5.50884 5.57979 5.64012 5.72989 5.80937 5.99295 6.04158 6.33538 6.45358 6.63838 6.78461 6.86802 7.11301 7.23862 7.57428 7.78433 7.90710 8.08896 8.14748 8.31508 8.78542 8.95082 9.37181 9.61048 11.06089 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.005770 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.924377 B = 4851.680463 C = 5302.527717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.274 3.726 3 H 0.062 0.938 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.604 5.604 13 C 0.074 3.926 14 C 0.726 3.274 15 O -0.584 6.584 16 N -0.628 5.628 17 C 0.089 3.911 18 C -0.135 4.135 19 C -0.116 4.116 20 C 0.171 3.829 21 H 0.110 0.890 22 C 0.460 3.540 23 O -0.484 6.484 24 O -0.523 6.523 25 H 0.010 0.990 26 H 0.029 0.971 27 H 0.094 0.906 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -6.851 -17.678 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.174 3.826 3 H 0.080 0.920 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.338 5.338 13 C -0.070 4.070 14 C 0.430 3.570 15 O -0.461 6.461 16 N -0.370 5.370 17 C -0.034 4.034 18 C -0.173 4.173 19 C -0.154 4.154 20 C 0.063 3.937 21 H 0.128 0.872 22 C 0.298 3.702 23 O -0.368 6.368 24 O -0.335 6.335 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.471 -6.183 -17.084 18.497 hybrid contribution 1.006 -0.483 1.294 1.709 sum 4.477 -6.666 -15.790 17.714 Atomic orbital electron populations 1.22108 0.98288 0.99312 1.00711 1.18854 0.90414 0.94252 0.79094 0.91982 1.21349 1.31316 1.12923 0.90303 0.92318 1.24880 0.95030 0.95056 0.98889 1.69877 1.36617 1.22754 1.23624 0.86489 0.78627 0.79845 0.82374 1.20660 1.21170 1.19983 1.47411 1.51973 1.11224 1.23219 1.22177 0.98455 0.84023 1.02319 1.15497 0.79148 0.83926 0.78415 1.90863 1.59380 1.18843 1.77018 1.47487 1.46500 1.22604 1.20372 1.23034 1.01178 0.86064 0.93078 1.22939 0.97125 1.01194 0.96085 1.22579 0.99046 0.97208 0.96604 1.20749 0.83631 1.00767 0.88550 0.87241 1.24029 0.87241 0.73772 0.85135 1.90802 1.83506 1.44650 1.17847 1.84494 1.22071 1.78587 1.48322 0.97112 0.95221 0.88788 0.92780 0.94190 0.90261 0.92006 0.91472 0.88560 0.90036 0.89541 0.88740 0.90246 0.73560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.97 37.16 0.33 -3.25 16 2 C 0.27 7.40 2.62 -69.08 -0.18 7.22 16 3 H 0.06 1.95 6.92 -51.93 -0.36 1.59 16 4 C -0.52 -14.83 7.95 -34.44 -0.27 -15.10 16 5 H 0.06 1.67 7.43 -52.49 -0.39 1.28 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.60 -13.94 2.75 -181.00 -0.50 -14.44 16 13 C 0.07 1.31 7.71 59.85 0.46 1.78 16 14 C 0.73 16.80 7.34 -86.91 -0.64 16.17 16 15 O -0.58 -16.04 15.34 -1.48 -0.02 -16.07 16 16 N -0.63 -10.79 2.83 -169.86 -0.48 -11.27 16 17 C 0.09 1.08 4.93 -2.40 -0.01 1.06 16 18 C -0.14 -1.10 7.10 -24.46 -0.17 -1.27 16 19 C -0.12 -1.03 6.44 -24.90 -0.16 -1.19 16 20 C 0.17 2.41 3.34 -68.10 -0.23 2.19 16 21 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 22 C 0.46 7.42 7.19 36.01 0.26 7.68 16 23 O -0.48 -10.31 16.02 -22.29 -0.36 -10.66 16 24 O -0.52 -6.19 13.40 -39.26 -0.53 -6.71 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 27 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.04 0.60 6.59 -51.93 -0.34 0.26 16 30 H 0.08 1.51 7.11 -51.93 -0.37 1.14 16 31 H 0.06 0.97 4.75 -51.93 -0.25 0.72 16 32 H 0.07 0.79 6.82 -51.93 -0.35 0.44 16 33 H 0.10 1.13 5.09 -51.93 -0.26 0.87 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.68 7.84 -51.93 -0.41 0.27 16 38 H 0.41 3.30 9.10 45.56 0.41 3.72 16 LS Contribution 305.83 15.07 4.61 4.61 Total: -1.00 -37.44 305.83 -6.66 -44.10 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.28 Total: 1.93 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -0.71 Total: 16.97 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.35 Total: -51.11 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.91 Total: -33.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -37.44 -6.66 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.379 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds