Wall clock time and date at job start Mon Mar 30 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47409 * 2 1 4 4 C 1.50700 * 109.46864 * 120.00548 * 2 1 3 5 5 H 1.08001 * 120.00026 * 120.00505 * 4 2 1 6 6 C 1.37878 * 119.99665 * 299.99456 * 4 2 1 7 7 N 1.31513 * 120.00268 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47380 * 89.99930 * 8 6 4 10 10 H 1.48495 * 109.47020 * 209.99838 * 8 6 4 11 11 H 1.48497 * 109.46843 * 329.99862 * 8 6 4 12 12 N 1.46500 * 109.46872 * 239.99986 * 2 1 3 13 13 C 1.46504 * 120.00296 * 299.99869 * 12 2 1 14 14 C 1.34785 * 119.99747 * 120.00373 * 12 2 1 15 15 O 1.21588 * 120.00084 * 6.40895 * 14 12 2 16 16 N 1.34774 * 119.99854 * 186.40768 * 14 12 2 17 17 C 1.47434 * 125.64694 * 6.11827 * 16 14 12 18 18 C 1.55129 * 104.72008 * 155.81459 * 17 16 14 19 19 C 1.55158 * 101.48936 * 37.29433 * 18 17 16 20 20 C 1.47022 * 125.65140 * 186.42073 * 16 14 12 21 21 H 1.08997 * 109.88128 * 300.44555 * 20 16 14 22 22 C 1.50704 * 109.87848 * 61.60507 * 20 16 14 23 23 O 1.20827 * 120.00160 * 0.02562 * 22 20 16 24 24 O 1.34231 * 119.99764 * 179.97438 * 22 20 16 25 25 H 1.09004 * 109.46833 * 59.99820 * 1 2 3 26 26 H 1.08996 * 109.47409 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46998 * 300.00049 * 1 2 3 28 28 H 0.96993 * 120.00423 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46476 * 95.74656 * 13 12 2 30 30 H 1.08999 * 109.47098 * 335.75020 * 13 12 2 31 31 H 1.09002 * 109.46967 * 215.74783 * 13 12 2 32 32 H 1.08996 * 110.36582 * 274.73938 * 17 16 14 33 33 H 1.08994 * 110.36647 * 37.06465 * 17 16 14 34 34 H 1.08998 * 111.19201 * 279.18975 * 18 17 16 35 35 H 1.08997 * 110.94000 * 155.28912 * 18 17 16 36 36 H 1.08996 * 110.72262 * 205.97287 * 19 18 17 37 37 H 1.08998 * 110.87122 * 82.76181 * 19 18 17 38 38 H 0.96698 * 116.99688 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3223 -1.1198 4.0079 9 1 3.6304 -0.5444 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4877 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1833 1.0891 -1.8358 16 7 3.1357 -0.6273 -3.2448 17 6 2.6335 -1.9265 -3.7280 18 6 2.7959 -1.8633 -5.2695 19 6 4.1343 -1.0907 -5.4078 20 6 4.0766 -0.0870 -4.2370 21 1 3.7232 0.8800 -4.5948 22 6 5.4436 0.0599 -3.6199 23 8 5.6228 -0.2536 -2.4668 24 8 6.4623 0.5382 -4.3515 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7082 1.1608 3.4843 29 1 0.7957 -2.1449 -2.0844 30 1 1.4299 -2.5708 -0.4767 31 1 2.5042 -2.6073 -1.8956 32 1 3.2287 -2.7407 -3.3147 33 1 1.5837 -2.0501 -3.4623 34 1 1.9766 -1.3110 -5.7297 35 1 2.8768 -2.8640 -5.6940 36 1 4.1805 -0.5670 -6.3627 37 1 4.9845 -1.7638 -5.2972 38 1 7.3205 0.6140 -3.9124 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:09 Heat of formation + Delta-G solvation = -110.659990 kcal Electronic energy + Delta-G solvation = -22134.416151 eV Core-core repulsion = 18784.343410 eV Total energy + Delta-G solvation = -3350.072741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.05022 -40.69865 -38.51709 -37.25680 -37.00612 -34.93297 -32.73200 -31.35742 -30.27463 -28.03625 -27.31126 -25.12081 -23.86354 -22.50489 -21.74575 -20.43743 -19.21309 -18.54040 -18.12017 -17.91976 -17.49084 -16.73573 -16.62494 -16.10732 -15.62687 -15.12618 -14.72472 -14.50169 -14.39832 -14.06875 -13.91292 -13.46105 -13.42114 -13.11705 -12.92598 -12.84313 -12.69339 -12.62741 -12.54711 -12.22045 -12.11482 -11.80721 -11.58903 -11.42855 -11.20152 -11.00511 -10.54365 -9.97831 -9.09215 -8.15722 -6.31805 1.18225 1.37088 1.39628 1.46979 1.52306 2.01955 2.34599 2.44828 3.05084 3.11389 3.50016 3.60868 4.02956 4.17354 4.23095 4.37195 4.52612 4.58965 4.71267 4.81109 4.85259 4.89702 4.92093 5.01359 5.05414 5.13050 5.25975 5.35376 5.45138 5.54326 5.59208 5.67316 5.99136 6.16374 6.21885 6.75447 6.95491 7.11314 7.34647 7.68943 8.88599 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.005770 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.924377 B = 4851.680463 C = 5302.527717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.280 3.720 3 H 0.002 0.998 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.286 1.286 10 H -0.273 1.273 11 H -0.262 1.262 12 N -0.615 5.615 13 C 0.073 3.927 14 C 0.716 3.284 15 O -0.644 6.644 16 N -0.627 5.627 17 C 0.074 3.926 18 C -0.117 4.117 19 C -0.102 4.102 20 C 0.156 3.844 21 H 0.110 0.890 22 C 0.463 3.537 23 O -0.547 6.547 24 O -0.504 6.504 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.265 0.735 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -9.281 -19.987 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.177 3.823 3 H 0.020 0.980 4 C -0.576 4.576 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.212 1.212 10 H -0.198 1.198 11 H -0.186 1.186 12 N -0.349 5.349 13 C -0.069 4.069 14 C 0.419 3.581 15 O -0.527 6.527 16 N -0.367 5.367 17 C -0.047 4.047 18 C -0.155 4.155 19 C -0.140 4.140 20 C 0.049 3.951 21 H 0.128 0.872 22 C 0.304 3.696 23 O -0.436 6.436 24 O -0.316 6.316 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.449 -8.672 -19.489 21.608 hybrid contribution 1.103 0.327 1.905 2.225 sum 4.552 -8.344 -17.584 19.989 Atomic orbital electron populations 1.21850 0.96559 1.00217 0.99978 1.18430 0.91608 0.91561 0.80686 0.97969 1.21566 1.31660 1.12967 0.91448 0.92901 1.25728 0.95093 0.95741 1.01915 1.70012 1.37284 1.23832 1.24454 0.85459 0.77759 0.79153 0.78642 1.21236 1.19834 1.18646 1.47291 1.52251 1.13051 1.22348 1.22461 1.00864 0.81026 1.02554 1.15763 0.78844 0.83527 0.79920 1.90797 1.61454 1.21635 1.78770 1.47431 1.46458 1.24091 1.18691 1.23377 1.01317 0.83608 0.96356 1.22950 0.96816 1.03278 0.92460 1.22685 0.99927 0.96138 0.95231 1.21276 0.81844 1.02704 0.89280 0.87201 1.24497 0.88541 0.72238 0.84322 1.90785 1.84620 1.47753 1.20458 1.84449 1.22511 1.77305 1.47381 0.95969 0.93265 0.91291 0.92543 0.90628 0.91723 0.89671 0.90904 0.88077 0.88877 0.85902 0.85436 0.89429 0.71563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.28 15.76 2.62 44.24 0.12 15.88 16 3 H 0.00 0.16 6.92 -2.39 -0.02 0.14 16 4 C -0.54 -31.61 7.95 25.60 0.20 -31.40 16 5 H 0.05 3.09 7.43 -2.91 -0.02 3.06 16 6 C 0.01 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -55.19 11.32 21.45 0.24 -54.95 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.62 -29.04 2.75 -844.82 -2.33 -31.36 16 13 C 0.07 2.50 7.71 127.77 0.99 3.49 16 14 C 0.72 34.18 7.34 179.05 1.31 35.49 16 15 O -0.64 -37.64 15.34 2.48 0.04 -37.60 16 16 N -0.63 -21.11 2.83 -809.57 -2.29 -23.40 16 17 C 0.07 1.57 4.93 86.93 0.43 2.00 16 18 C -0.12 -1.32 7.10 32.06 0.23 -1.09 16 19 C -0.10 -1.38 6.44 31.78 0.20 -1.17 16 20 C 0.16 4.18 3.34 44.60 0.15 4.33 16 21 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 22 C 0.46 14.80 7.19 71.24 0.51 15.32 16 23 O -0.55 -24.05 16.02 25.35 0.41 -23.65 16 24 O -0.50 -11.21 13.40 -51.43 -0.69 -11.90 16 25 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.05 2.22 7.67 -2.39 -0.02 2.20 16 27 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 29 H 0.08 2.06 6.59 -2.39 -0.02 2.04 16 30 H 0.06 2.41 7.11 -2.39 -0.02 2.40 16 31 H 0.09 2.51 4.75 -2.39 -0.01 2.50 16 32 H 0.07 1.49 6.82 -2.39 -0.02 1.47 16 33 H 0.10 2.03 5.09 -2.39 -0.01 2.02 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 1.10 7.84 -2.39 -0.02 1.08 16 38 H 0.42 6.39 9.10 -74.06 -0.67 5.71 16 Total: -1.00 -88.51 305.83 3.06 -85.46 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.42 Total: 11.43 kcal Atomic # 6 Polarization: 33.14 SS G_CDS: 5.24 Total: 38.37 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -4.38 Total: -109.71 kcal Atomic # 8 Polarization: -72.90 SS G_CDS: -0.24 Total: -73.15 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -88.51 3.06 -85.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.205 kcal (2) G-P(sol) polarization free energy of solvation -88.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds