Wall clock time and date at job start Mon Mar 30 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21582 * 119.99845 * 0.02562 * 14 12 2 16 16 N 1.34779 * 120.00299 * 179.97438 * 14 12 2 17 17 C 1.46498 * 120.00169 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.46911 * 34.99810 * 17 16 14 19 19 C 1.50698 * 109.46940 * 275.00240 * 17 16 14 20 20 O 1.20830 * 120.00389 * 359.97438 * 19 17 16 21 21 O 1.34229 * 120.00018 * 180.02562 * 19 17 16 22 22 C 1.52995 * 109.47133 * 155.00297 * 17 16 14 23 23 C 1.53006 * 117.49615 * 248.74230 * 22 17 16 24 24 C 1.53004 * 117.49682 * 180.08951 * 22 17 16 25 25 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 26 26 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 27 27 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 28 28 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 29 29 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 30 30 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 31 31 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 32 32 H 0.96997 * 119.99854 * 0.02562 * 16 14 12 33 33 H 0.96703 * 117.00060 * 180.02562 * 21 19 17 34 34 H 1.08997 * 115.55304 * 34.41494 * 22 17 16 35 35 H 1.08996 * 117.50075 * 0.02562 * 23 22 17 36 36 H 1.09005 * 117.49462 * 145.01949 * 23 22 17 37 37 H 1.09004 * 117.49589 * 214.97491 * 24 22 17 38 38 H 1.08992 * 117.50073 * 359.97023 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0872 1.1283 -1.8907 16 7 3.2426 -0.6709 -3.1838 17 6 4.0853 0.0409 -4.1478 18 1 4.7307 0.7417 -3.6182 19 6 3.2123 0.7959 -5.1167 20 8 2.0095 0.7443 -5.0130 21 8 3.7707 1.5249 -6.0957 22 6 4.9456 -0.9657 -4.9141 23 6 6.4526 -0.9526 -4.6499 24 6 5.9025 -0.4152 -5.9734 25 1 -0.3634 -1.0206 -0.1200 26 1 -0.3634 0.4065 0.9439 27 1 -0.3634 0.6142 -0.8239 28 1 1.9116 -1.9121 3.4375 29 1 0.7374 -2.1443 -1.9995 30 1 2.4627 -2.5818 -1.9866 31 1 1.5295 -2.5968 -0.4710 32 1 3.0083 -1.5995 -3.3373 33 1 3.1700 1.9920 -6.6925 34 1 4.4776 -1.9302 -5.1112 35 1 6.8310 -0.2270 -3.9299 36 1 6.9761 -1.9084 -4.6736 37 1 6.0644 -1.0177 -6.8673 38 1 5.9188 0.6641 -6.1247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:19 Heat of formation + Delta-G solvation = -83.363220 kcal Electronic energy + Delta-G solvation = -21559.191636 eV Core-core repulsion = 18210.302572 eV Total energy + Delta-G solvation = -3348.889064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67614 -39.28739 -37.60627 -36.18388 -35.46854 -33.98823 -32.64623 -30.19513 -27.90624 -26.16277 -24.71007 -23.10736 -22.43492 -21.37158 -20.60905 -19.06787 -18.18687 -17.61899 -17.31446 -16.71725 -16.27901 -15.73550 -15.11399 -14.71852 -14.27500 -14.06611 -13.64796 -13.21246 -13.06565 -12.65648 -12.53431 -11.93631 -11.91081 -11.75310 -11.69166 -11.44563 -11.33239 -11.22485 -11.01205 -10.71332 -10.44063 -10.25417 -10.04914 -9.73744 -9.47789 -9.10127 -9.01974 -8.25999 -7.70117 -6.47283 -4.09095 2.23452 2.70385 3.08687 3.45221 3.53250 3.67943 3.72991 3.90534 4.30807 4.44995 4.51797 4.63799 4.74763 4.88036 5.19823 5.26519 5.34443 5.49047 5.58110 5.66768 5.85131 5.94587 5.95413 6.23722 6.39021 6.47687 6.51217 6.56729 6.67157 6.92330 7.02309 7.45634 7.65371 7.91395 7.97075 8.35238 8.56530 8.85085 9.17972 9.55852 10.87725 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026906 B = 0.005033 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.410183 B = 5562.134888 C = 5761.443427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.251 3.749 3 H 0.055 0.945 4 C -0.616 4.616 5 H 0.062 0.938 6 C 0.044 3.956 7 N -0.895 5.895 8 Si 1.031 2.969 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.599 5.599 13 C 0.087 3.913 14 C 0.707 3.293 15 O -0.597 6.597 16 N -0.731 5.731 17 C 0.211 3.789 18 H 0.126 0.874 19 C 0.467 3.533 20 O -0.502 6.502 21 O -0.516 6.516 22 C -0.170 4.170 23 C -0.165 4.165 24 C -0.160 4.160 25 H 0.045 0.955 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.269 0.731 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.399 0.601 33 H 0.404 0.596 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.813 -1.658 -19.521 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.149 3.851 3 H 0.073 0.927 4 C -0.654 4.654 5 H 0.080 0.920 6 C -0.163 4.163 7 N -0.528 5.528 8 Si 0.858 3.142 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.202 1.202 12 N -0.333 5.333 13 C -0.057 4.057 14 C 0.409 3.591 15 O -0.476 6.476 16 N -0.389 5.389 17 C 0.102 3.898 18 H 0.143 0.857 19 C 0.306 3.694 20 O -0.388 6.388 21 O -0.327 6.327 22 C -0.189 4.189 23 C -0.202 4.202 24 C -0.198 4.198 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.263 0.737 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.640 0.143 -17.873 18.742 hybrid contribution -0.404 -1.550 -1.632 2.286 sum 5.236 -1.406 -19.504 20.244 Atomic orbital electron populations 1.22432 0.98757 1.00128 1.00078 1.19091 0.90141 0.94466 0.81415 0.92741 1.22120 1.41210 1.11105 0.90948 0.92005 1.25608 0.93223 1.05684 0.91807 1.70873 1.43808 1.06304 1.31777 0.84227 0.77751 0.76133 0.76045 1.20974 1.20504 1.20161 1.47184 1.51180 1.11549 1.23390 1.21528 0.98400 0.83199 1.02550 1.15857 0.79161 0.84696 0.79399 1.90851 1.63297 1.15651 1.77759 1.44940 1.56542 1.15101 1.22366 1.19620 0.89462 0.93558 0.87191 0.85660 1.24266 0.88508 0.76843 0.79762 1.90725 1.16564 1.60559 1.70937 1.84546 1.45573 1.60640 1.41926 1.22263 0.92384 1.00067 1.04194 1.23128 0.93769 1.03515 0.99808 1.23086 1.01351 1.02521 0.92799 0.93566 0.91957 0.95515 0.92143 0.93844 0.93322 0.89714 0.76413 0.73723 0.86730 0.88021 0.88222 0.88384 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 9.01 37.16 0.33 -3.24 16 2 C 0.25 6.35 2.23 -69.09 -0.15 6.19 16 3 H 0.05 1.51 5.47 -51.93 -0.28 1.23 16 4 C -0.62 -17.19 8.30 -34.45 -0.29 -17.48 16 5 H 0.06 1.82 7.38 -52.48 -0.39 1.43 16 6 C 0.04 1.25 5.20 -17.82 -0.09 1.16 16 7 N -0.89 -26.96 13.70 55.43 0.76 -26.20 16 8 Si 1.03 25.84 26.44 -169.99 -4.49 21.35 16 9 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.46 6.12 56.52 0.35 -6.12 16 12 N -0.60 -13.18 2.75 -181.01 -0.50 -13.68 16 13 C 0.09 1.51 9.06 59.85 0.54 2.05 16 14 C 0.71 15.30 8.11 -86.92 -0.71 14.60 16 15 O -0.60 -15.11 15.33 5.29 0.08 -15.02 16 16 N -0.73 -11.81 4.47 -59.82 -0.27 -12.07 16 17 C 0.21 2.89 2.72 -69.09 -0.19 2.70 16 18 H 0.13 1.86 7.33 -51.93 -0.38 1.48 16 19 C 0.47 6.67 7.64 36.00 0.28 6.95 16 20 O -0.50 -9.12 17.08 -18.75 -0.32 -9.44 16 21 O -0.52 -5.22 11.36 -39.26 -0.45 -5.67 16 22 C -0.17 -1.64 5.33 -90.62 -0.48 -2.12 16 23 C -0.17 -1.38 10.18 -26.69 -0.27 -1.66 16 24 C -0.16 -1.25 9.45 -26.69 -0.25 -1.51 16 25 H 0.05 0.99 7.46 -51.93 -0.39 0.60 16 26 H 0.06 1.46 5.44 -51.93 -0.28 1.18 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.27 7.99 8.73 -40.82 -0.36 7.63 16 29 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 31 H 0.08 1.59 6.92 -51.93 -0.36 1.23 16 32 H 0.40 5.37 6.28 -40.82 -0.26 5.11 16 33 H 0.40 2.52 9.10 45.56 0.41 2.94 16 34 H 0.11 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.10 0.91 8.05 -51.93 -0.42 0.49 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.11 0.91 6.85 -51.93 -0.36 0.55 16 LS Contribution 314.72 15.07 4.74 4.74 Total: -1.00 -35.94 314.72 -6.07 -42.01 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -4.34 Total: 6.32 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: -1.28 Total: 7.66 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.01 Total: -51.95 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.69 Total: -30.13 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.49 Total: 21.35 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.94 -6.07 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.358 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds