Wall clock time and date at job start Mon Mar 30 2020 04:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37875 * 120.00133 * 294.36950 * 4 2 1 7 7 N 1.31516 * 120.00510 * 156.90156 * 6 4 2 8 8 Si 1.86810 * 119.99756 * 337.17312 * 6 4 2 9 9 H 1.48501 * 109.47061 * 179.72434 * 8 6 4 10 10 H 1.48495 * 109.46894 * 299.72787 * 8 6 4 11 11 H 1.48496 * 109.46696 * 59.72479 * 8 6 4 12 12 N 1.46503 * 109.46749 * 240.00646 * 2 1 3 13 13 C 1.46505 * 120.00016 * 299.99254 * 12 2 1 14 14 C 1.34773 * 120.00310 * 119.99959 * 12 2 1 15 15 O 1.21582 * 119.99845 * 0.02562 * 14 12 2 16 16 N 1.34779 * 120.00299 * 179.97438 * 14 12 2 17 17 C 1.46498 * 120.00169 * 180.02562 * 16 14 12 18 18 H 1.08998 * 109.46911 * 34.99810 * 17 16 14 19 19 C 1.50698 * 109.46940 * 275.00240 * 17 16 14 20 20 O 1.20830 * 120.00389 * 359.97438 * 19 17 16 21 21 O 1.34229 * 120.00018 * 180.02562 * 19 17 16 22 22 C 1.52995 * 109.47133 * 155.00297 * 17 16 14 23 23 C 1.53006 * 117.49615 * 248.74230 * 22 17 16 24 24 C 1.53004 * 117.49682 * 180.08951 * 22 17 16 25 25 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 26 26 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 27 27 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 28 28 H 0.96989 * 119.99527 * 355.20009 * 7 6 4 29 29 H 1.09007 * 109.46817 * 90.00493 * 13 12 2 30 30 H 1.08992 * 109.47593 * 210.00355 * 13 12 2 31 31 H 1.08998 * 109.47142 * 330.00868 * 13 12 2 32 32 H 0.96997 * 119.99854 * 0.02562 * 16 14 12 33 33 H 0.96703 * 117.00060 * 180.02562 * 21 19 17 34 34 H 1.08997 * 115.55304 * 34.41494 * 22 17 16 35 35 H 1.08996 * 117.50075 * 0.02562 * 23 22 17 36 36 H 1.09005 * 117.49462 * 145.01949 * 23 22 17 37 37 H 1.09004 * 117.49589 * 214.97491 * 24 22 17 38 38 H 1.08992 * 117.50073 * 359.97023 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7976 -0.1758 2.4793 7 7 1.8082 -0.9532 3.5401 8 14 1.4571 1.6517 2.6640 9 1 1.2325 1.9710 4.0968 10 1 2.6206 2.4252 2.1609 11 1 0.2477 2.0114 1.8811 12 7 2.0182 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0834 15 8 3.0872 1.1283 -1.8907 16 7 3.2426 -0.6709 -3.1838 17 6 4.0853 0.0409 -4.1478 18 1 4.7307 0.7417 -3.6182 19 6 3.2123 0.7959 -5.1167 20 8 2.0095 0.7443 -5.0130 21 8 3.7707 1.5249 -6.0957 22 6 4.9456 -0.9657 -4.9141 23 6 6.4526 -0.9526 -4.6499 24 6 5.9025 -0.4152 -5.9734 25 1 -0.3634 -1.0206 -0.1200 26 1 -0.3634 0.4065 0.9439 27 1 -0.3634 0.6142 -0.8239 28 1 1.9116 -1.9121 3.4375 29 1 0.7374 -2.1443 -1.9995 30 1 2.4627 -2.5818 -1.9866 31 1 1.5295 -2.5968 -0.4710 32 1 3.0083 -1.5995 -3.3373 33 1 3.1700 1.9920 -6.6925 34 1 4.4776 -1.9302 -5.1112 35 1 6.8310 -0.2270 -3.9299 36 1 6.9761 -1.9084 -4.6736 37 1 6.0644 -1.0177 -6.8673 38 1 5.9188 0.6641 -6.1247 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:19 Heat of formation + Delta-G solvation = -110.211304 kcal Electronic energy + Delta-G solvation = -21560.355857 eV Core-core repulsion = 18210.302572 eV Total energy + Delta-G solvation = -3350.053284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90190 -40.75890 -38.49842 -37.42161 -37.04858 -35.46295 -34.61259 -32.01133 -29.14745 -27.69780 -26.79336 -24.16102 -23.12240 -22.89092 -21.74461 -20.71292 -19.55116 -19.24725 -19.01985 -17.83191 -17.63310 -16.82344 -16.51320 -16.36618 -15.63543 -15.21745 -15.14294 -14.75798 -14.63696 -14.31672 -14.01754 -13.74874 -13.42588 -13.21060 -13.07297 -12.71915 -12.51947 -12.43398 -12.25778 -12.05654 -11.97222 -11.70609 -11.47840 -11.26068 -11.18454 -11.08535 -10.46821 -10.39684 -9.48060 -8.70886 -6.36040 1.12992 1.43979 1.47142 1.50829 1.71180 1.88324 2.35693 2.43432 2.83064 2.98101 3.16086 3.44985 3.88735 3.99082 4.05392 4.24173 4.37338 4.40982 4.49890 4.56156 4.70022 4.75654 4.86329 4.88481 5.01534 5.10434 5.17240 5.25155 5.30087 5.34642 5.56085 5.64321 5.79743 6.02399 6.10468 6.59753 6.94616 6.99233 7.31666 7.54832 8.60108 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026906 B = 0.005033 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.410183 B = 5562.134888 C = 5761.443427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.251 3.749 3 H 0.029 0.971 4 C -0.611 4.611 5 H 0.037 0.963 6 C 0.002 3.998 7 N -0.922 5.922 8 Si 1.064 2.936 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.250 1.250 12 N -0.611 5.611 13 C 0.085 3.915 14 C 0.701 3.299 15 O -0.641 6.641 16 N -0.714 5.714 17 C 0.205 3.795 18 H 0.110 0.890 19 C 0.473 3.527 20 O -0.546 6.546 21 O -0.498 6.498 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.144 4.144 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.260 0.740 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.414 0.586 33 H 0.425 0.575 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -1.990 -21.914 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.147 3.853 3 H 0.047 0.953 4 C -0.649 4.649 5 H 0.056 0.944 6 C -0.200 4.200 7 N -0.556 5.556 8 Si 0.887 3.113 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.174 1.174 12 N -0.345 5.345 13 C -0.058 4.058 14 C 0.402 3.598 15 O -0.524 6.524 16 N -0.372 5.372 17 C 0.096 3.904 18 H 0.127 0.873 19 C 0.314 3.686 20 O -0.436 6.436 21 O -0.311 6.311 22 C -0.197 4.197 23 C -0.202 4.202 24 C -0.182 4.182 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.253 0.747 33 H 0.286 0.714 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.898 -0.231 -20.344 21.183 hybrid contribution -0.365 -1.471 -1.007 1.820 sum 5.533 -1.702 -21.350 22.121 Atomic orbital electron populations 1.22275 0.96773 1.01245 1.00210 1.18824 0.91551 0.93029 0.81849 0.95347 1.22226 1.40273 1.10069 0.92315 0.94427 1.26652 0.93017 1.08440 0.91843 1.70961 1.46177 1.05934 1.32523 0.83784 0.78589 0.72334 0.76630 1.20379 1.20894 1.17442 1.47149 1.51462 1.13205 1.22691 1.21722 1.00869 0.80735 1.02440 1.16074 0.78942 0.84336 0.80437 1.90806 1.64838 1.17737 1.78988 1.44734 1.55719 1.15612 1.21182 1.19848 0.89158 0.94458 0.86907 0.87251 1.24265 0.87739 0.76503 0.80063 1.90713 1.18253 1.62266 1.72340 1.84490 1.45534 1.59823 1.41226 1.22251 0.92415 0.99838 1.05186 1.23211 0.92725 1.04225 1.00030 1.23179 0.99164 1.02654 0.93155 0.92231 0.92653 0.94218 0.93138 0.91632 0.89769 0.91533 0.74723 0.71375 0.84967 0.89110 0.86461 0.86104 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.57 9.01 71.98 0.65 -5.92 16 2 C 0.25 12.70 2.23 44.24 0.10 12.80 16 3 H 0.03 1.60 5.47 -2.39 -0.01 1.59 16 4 C -0.61 -34.57 8.30 25.60 0.21 -34.36 16 5 H 0.04 2.27 7.38 -2.91 -0.02 2.25 16 6 C 0.00 0.13 5.20 84.65 0.44 0.57 16 7 N -0.92 -56.39 13.70 21.45 0.29 -56.09 16 8 Si 1.06 52.33 26.44 68.60 1.81 54.14 16 9 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.25 -11.19 6.12 99.48 0.61 -10.58 16 12 N -0.61 -26.58 2.75 -844.86 -2.33 -28.90 16 13 C 0.08 2.81 9.06 127.77 1.16 3.97 16 14 C 0.70 30.12 8.11 179.05 1.45 31.57 16 15 O -0.64 -32.95 15.33 -3.97 -0.06 -33.01 16 16 N -0.71 -22.16 4.47 -461.43 -2.06 -24.23 16 17 C 0.20 5.34 2.72 44.24 0.12 5.46 16 18 H 0.11 3.24 7.33 -2.39 -0.02 3.22 16 19 C 0.47 12.86 7.64 71.24 0.54 13.40 16 20 O -0.55 -19.32 17.08 21.95 0.37 -18.94 16 21 O -0.50 -8.98 11.36 -51.41 -0.58 -9.57 16 22 C -0.18 -2.96 5.33 -10.79 -0.06 -3.01 16 23 C -0.17 -2.35 10.18 30.62 0.31 -2.04 16 24 C -0.14 -1.80 9.45 30.62 0.29 -1.51 16 25 H 0.06 2.46 7.46 -2.39 -0.02 2.45 16 26 H 0.05 2.53 5.44 -2.39 -0.01 2.51 16 27 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.26 15.85 8.73 -92.72 -0.81 15.04 16 29 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.08 2.13 6.36 -2.39 -0.02 2.11 16 31 H 0.07 2.45 6.92 -2.39 -0.02 2.44 16 32 H 0.41 10.17 6.28 -92.71 -0.58 9.58 16 33 H 0.42 4.23 9.10 -74.06 -0.67 3.56 16 34 H 0.13 1.76 8.07 -2.39 -0.02 1.74 16 35 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 36 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.45 6.85 -2.39 -0.02 1.43 16 Total: -1.00 -79.40 314.72 2.38 -77.03 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -0.29 Total: 18.64 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 5.22 Total: 20.94 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.10 Total: -109.22 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -0.27 Total: -61.52 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.81 Total: 54.14 kcal Total: -79.40 2.38 -77.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.185 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds