Wall clock time and date at job start Mon Mar 30 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00305 * 2 1 4 4 H 1.48497 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47254 * 299.99956 * 3 2 1 6 6 H 1.48500 * 109.47197 * 59.99594 * 3 2 1 7 7 C 1.37878 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99654 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00221 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00358 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99815 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00305 * 180.02562 * 11 10 9 14 14 O 1.42900 * 109.46979 * 180.02562 * 13 11 10 15 15 C 1.42905 * 113.99523 * 180.02562 * 14 13 11 16 16 H 1.08993 * 109.47057 * 30.00162 * 15 14 13 17 17 C 1.53002 * 109.47086 * 269.99562 * 15 14 13 18 18 C 1.53000 * 109.47233 * 300.00656 * 17 15 14 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 15 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.46915 * 150.00084 * 15 14 13 22 22 H 1.09002 * 109.47153 * 179.97438 * 21 15 14 23 23 C 1.53002 * 109.47143 * 299.99839 * 21 15 14 24 24 N 1.46905 * 109.47248 * 185.00031 * 23 21 15 25 25 H 0.97006 * 119.99697 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47004 * 60.00101 * 9 7 2 27 27 H 1.08995 * 109.47108 * 300.00142 * 9 7 2 28 28 H 0.97002 * 119.99699 * 0.02562 * 10 9 7 29 29 H 1.09003 * 109.47103 * 60.00158 * 13 11 10 30 30 H 1.08995 * 109.47117 * 300.00133 * 13 11 10 31 31 H 1.08992 * 109.47063 * 180.02562 * 17 15 14 32 32 H 1.09004 * 109.46733 * 59.99998 * 17 15 14 33 33 H 1.09002 * 109.47398 * 59.99826 * 18 17 15 34 34 H 1.09001 * 109.47194 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 37 37 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 39 39 H 1.09000 * 109.47173 * 304.99936 * 23 21 15 40 40 H 1.09000 * 109.47089 * 65.00013 * 23 21 15 41 41 H 1.00901 * 110.99715 * 179.97438 * 24 23 21 42 42 H 1.00900 * 111.00016 * 303.95073 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6128 0.0027 11 6 1.7535 -4.8834 0.0044 12 8 0.5611 -5.1050 0.0046 13 6 2.7328 -6.0289 0.0060 14 8 2.0182 -7.2664 0.0070 15 6 2.8581 -8.4225 0.0091 16 1 3.7912 -8.1927 0.5234 17 6 3.1590 -8.8370 -1.4327 18 6 1.8491 -9.1595 -2.1545 19 6 1.1375 -10.3054 -1.4324 20 6 0.8367 -9.8911 0.0093 21 6 2.1466 -9.5685 0.7312 22 1 2.7871 -10.4505 0.7325 23 6 1.8457 -9.1540 2.1730 24 7 1.2715 -10.2938 2.9004 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8919 28 1 3.1565 -3.4355 0.0029 29 1 3.3594 -5.9700 0.8960 30 1 3.3595 -5.9724 -0.8840 31 1 3.7992 -9.7191 -1.4310 32 1 3.6658 -8.0206 -1.9471 33 1 1.2084 -8.2776 -2.1562 34 1 2.0634 -9.4552 -3.1815 35 1 0.2046 -10.5355 -1.9469 36 1 1.7782 -11.1873 -1.4308 37 1 0.3302 -10.7076 0.5239 38 1 0.1960 -9.0092 0.0077 39 1 2.7683 -8.8393 2.6606 40 1 1.1347 -8.3278 2.1726 41 1 1.0642 -10.0454 3.8562 42 1 0.4500 -10.6453 2.4316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089172424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:59 Heat of formation + Delta-G solvation = -135.318962 kcal Electronic energy + Delta-G solvation = -21206.711210 eV Core-core repulsion = 17991.402271 eV Total energy + Delta-G solvation = -3215.308940 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94385 -40.09401 -37.17190 -36.12370 -35.42695 -34.38353 -31.30085 -31.09331 -30.06599 -27.91841 -25.60581 -24.54871 -23.36805 -21.97137 -21.50361 -20.53453 -19.10970 -17.72889 -17.57321 -17.14740 -16.98462 -16.73014 -16.08095 -15.93397 -15.82872 -15.24356 -14.94253 -14.61953 -14.39665 -14.23057 -14.06268 -13.78170 -13.61364 -13.03511 -12.98797 -12.88423 -12.75630 -12.53658 -12.32179 -12.22024 -11.92238 -11.47502 -11.43419 -11.35868 -10.85398 -10.83441 -10.72047 -10.39231 -9.87336 -9.62413 -8.30569 -6.47574 1.43082 1.44405 1.57913 1.70200 2.04710 2.39268 3.04608 3.16704 3.54428 3.79244 3.82413 3.92868 3.96852 4.21063 4.22425 4.30926 4.35297 4.43221 4.54230 4.57637 4.60627 4.72600 4.87451 5.02707 5.03117 5.05512 5.09485 5.20650 5.29097 5.29990 5.36264 5.41605 5.45654 5.59751 5.65731 5.82259 6.18274 6.26747 6.54729 6.63471 6.88788 7.21939 7.46260 8.82074 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.003429 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.054442 B = 8163.938756 C = 8449.157836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.267 3.733 10 N -0.704 5.704 11 C 0.493 3.507 12 O -0.594 6.594 13 C 0.056 3.944 14 O -0.377 6.377 15 C 0.084 3.916 16 H 0.084 0.916 17 C -0.136 4.136 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.072 4.072 22 H 0.105 0.895 23 C 0.067 3.933 24 N -0.850 5.850 25 H 0.269 0.731 26 H -0.014 1.014 27 H -0.014 1.014 28 H 0.411 0.589 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.035 0.965 39 H 0.073 0.927 40 H 0.009 0.991 41 H 0.346 0.654 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -20.609 0.249 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.356 5.356 11 C 0.280 3.720 12 O -0.475 6.475 13 C -0.023 4.023 14 O -0.295 6.295 15 C 0.026 3.974 16 H 0.102 0.898 17 C -0.174 4.174 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.091 4.091 22 H 0.123 0.877 23 C -0.064 4.064 24 N -0.381 5.381 25 H 0.078 0.922 26 H 0.004 0.996 27 H 0.004 0.996 28 H 0.247 0.753 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.159 0.841 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.488 -21.026 0.106 23.497 hybrid contribution -0.743 1.927 0.092 2.068 sum 9.745 -19.099 0.197 21.442 Atomic orbital electron populations 1.70157 1.08384 1.28543 1.50023 1.26107 0.95781 1.04047 0.93823 0.85073 0.79145 0.77122 0.77639 1.17402 1.20504 1.20504 1.21649 0.94417 0.90353 1.52808 0.89491 1.18553 0.88714 0.84322 0.94028 1.46078 1.11372 1.05073 1.73060 1.21266 0.89767 0.84982 0.76030 1.90654 1.19679 1.85494 1.51636 1.22246 0.92437 0.82932 1.04727 1.88076 1.33615 1.12594 1.95263 1.22419 0.93603 0.84948 0.96428 0.89828 1.22022 0.97756 1.02572 0.95040 1.21431 0.96848 0.98158 0.99199 1.21475 1.00476 0.98185 0.94823 1.21485 0.97017 1.00200 0.96237 1.21245 0.97689 0.97211 0.92942 0.87741 1.21716 0.99114 0.91357 0.94170 1.58858 1.37248 1.35212 1.06775 0.92247 0.99597 0.99598 0.75301 0.87560 0.87799 0.88666 0.91454 0.94504 0.91245 0.92391 0.90261 0.91142 0.94563 0.90820 0.97302 0.84127 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.10 5.46 84.65 0.46 0.57 16 3 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.12 9.28 25.60 0.24 -29.88 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 14.84 5.43 85.63 0.46 15.30 16 10 N -0.70 -29.83 5.55 -466.79 -2.59 -32.42 16 11 C 0.49 20.38 7.91 87.66 0.69 21.08 16 12 O -0.59 -31.59 16.50 16.00 0.26 -31.32 16 13 C 0.06 1.52 6.23 71.24 0.44 1.96 16 14 O -0.38 -11.00 7.59 -129.94 -0.99 -11.98 16 15 C 0.08 1.65 2.35 30.59 0.07 1.73 16 16 H 0.08 1.27 7.79 -2.39 -0.02 1.26 16 17 C -0.14 -2.33 5.63 30.60 0.17 -2.16 16 18 C -0.12 -2.45 5.78 30.59 0.18 -2.27 16 19 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 20 C -0.11 -2.36 4.83 30.60 0.15 -2.21 16 21 C -0.07 -1.37 2.23 -10.79 -0.02 -1.40 16 22 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 23 C 0.07 1.41 6.03 86.30 0.52 1.93 16 24 N -0.85 -15.13 9.62 -186.70 -1.80 -16.93 16 25 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 28 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 29 H 0.11 2.18 8.08 -2.39 -0.02 2.16 16 30 H 0.10 2.18 7.87 -2.39 -0.02 2.16 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.12 7.87 -2.39 -0.02 1.10 16 33 H 0.04 1.03 7.68 -2.39 -0.02 1.01 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.28 6.68 -2.39 -0.02 1.26 16 38 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.01 0.24 7.84 -2.39 -0.02 0.22 16 41 H 0.35 5.42 9.08 -89.69 -0.81 4.60 16 42 H 0.34 5.72 7.25 -89.69 -0.65 5.07 16 Total: -1.00 -75.47 337.64 -0.46 -75.93 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: -1.21 Total: 26.19 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 3.55 Total: 2.76 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -4.10 Total: -105.74 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.72 Total: -43.31 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -75.47 -0.46 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089172424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.389 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds