Wall clock time and date at job start Mon Mar 30 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00372 * 2 1 4 4 H 1.48505 * 109.47110 * 270.00317 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.00028 * 3 2 1 6 6 H 1.48500 * 109.47480 * 150.00117 * 3 2 1 7 7 C 1.38959 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99986 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99706 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00146 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99518 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00425 * 180.02562 * 10 9 7 13 13 O 1.42893 * 109.47168 * 179.97438 * 12 10 9 14 14 C 1.42904 * 113.99768 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47002 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47497 * 304.99699 * 15 14 13 17 17 C 1.53002 * 109.47415 * 65.00051 * 15 14 13 18 18 C 1.53000 * 109.47233 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47060 * 299.99657 * 18 17 15 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.52997 * 109.47232 * 184.99924 * 15 14 13 22 22 H 1.09001 * 109.47289 * 60.00075 * 21 15 14 23 23 C 1.52997 * 109.47457 * 299.99930 * 21 15 14 24 24 N 1.46895 * 109.47535 * 174.99690 * 23 21 15 25 25 H 0.96999 * 119.99763 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00357 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.46796 * 59.99579 * 12 10 9 28 28 H 1.08998 * 109.47129 * 300.00191 * 12 10 9 29 29 H 1.09002 * 109.47048 * 60.00255 * 14 13 12 30 30 H 1.09001 * 109.47280 * 299.99579 * 14 13 12 31 31 H 1.08992 * 109.47063 * 59.99950 * 17 15 14 32 32 H 1.09004 * 109.46733 * 299.99664 * 17 15 14 33 33 H 1.09002 * 109.47398 * 59.99826 * 18 17 15 34 34 H 1.09001 * 109.47194 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 37 37 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 39 39 H 1.09007 * 109.47097 * 295.00352 * 23 21 15 40 40 H 1.08997 * 109.47057 * 54.99433 * 23 21 15 41 41 H 1.00897 * 110.99910 * 56.05029 * 24 23 21 42 42 H 1.00900 * 111.00286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0001 12 6 1.2437 -4.8630 -0.0011 13 8 2.1723 -5.9491 -0.0016 14 6 1.5577 -7.2392 -0.0028 15 6 2.6406 -8.3200 -0.0026 16 1 3.3148 -8.1591 -0.8438 17 6 3.4313 -8.2496 1.3054 18 6 4.5147 -9.3300 1.3053 19 6 3.8611 -10.7075 1.1781 20 6 3.0704 -10.7780 -0.1298 21 6 1.9866 -9.6973 -0.1295 22 1 1.4233 -9.7476 -1.0613 23 6 1.0403 -9.9234 1.0513 24 7 0.3230 -11.1922 0.8681 25 1 -0.4850 0.8401 0.0004 26 1 0.3534 -2.3907 -0.0005 27 1 0.6174 -4.9205 -0.8914 28 1 0.6167 -4.9209 0.8886 29 1 0.9379 -7.3456 -0.8931 30 1 0.9373 -7.3470 0.8870 31 1 2.7572 -8.4106 2.1466 32 1 3.8973 -7.2683 1.3958 33 1 5.1888 -9.1685 0.4641 34 1 5.0777 -9.2801 2.2373 35 1 4.6327 -11.4773 1.1785 36 1 3.1870 -10.8689 2.0193 37 1 2.6044 -11.7592 -0.2202 38 1 3.7445 -10.6166 -0.9710 39 1 1.6160 -9.9616 1.9761 40 1 0.3227 -9.1047 1.1037 41 1 0.9685 -11.9590 0.7521 42 1 -0.3085 -11.3647 1.6358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:37 Heat of formation + Delta-G solvation = -109.359173 kcal Electronic energy + Delta-G solvation = -21014.644581 eV Core-core repulsion = 17800.461343 eV Total energy + Delta-G solvation = -3214.183239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88530 -38.33530 -36.70721 -34.23554 -33.88953 -32.05094 -31.23319 -30.33674 -27.83052 -25.59387 -24.80350 -24.16083 -22.16161 -21.34685 -19.42895 -18.53189 -17.92961 -16.57372 -16.30527 -15.94670 -15.78161 -15.38241 -14.86550 -14.56800 -14.42958 -13.84763 -13.73842 -13.58371 -13.33385 -13.00750 -12.78191 -12.29281 -12.00209 -11.92001 -11.70273 -11.53191 -11.28852 -11.14800 -11.06644 -10.91268 -10.38730 -10.34701 -10.22739 -10.10499 -10.03624 -9.52336 -9.25201 -8.86392 -8.33122 -7.97587 -6.41865 -3.82870 3.18613 3.27069 3.32909 3.73488 3.89061 4.23540 4.29439 4.54796 4.57045 4.70457 4.96431 5.01739 5.13157 5.17147 5.24217 5.27175 5.32198 5.42084 5.50325 5.52745 5.54292 5.62832 5.65484 5.72351 5.85402 5.90575 5.94504 6.00233 6.07826 6.08826 6.22653 6.24836 6.40553 6.46975 6.88129 7.15875 7.49355 7.55512 8.05726 8.61306 9.17655 9.52207 10.04265 10.75982 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040124 B = 0.003178 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.676280 B = 8808.210085 C = 9282.559723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.055 3.945 13 O -0.357 6.357 14 C 0.061 3.939 15 C -0.077 4.077 16 H 0.082 0.918 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.079 4.079 22 H 0.079 0.921 23 C 0.057 3.943 24 N -0.852 5.852 25 H 0.272 0.728 26 H 0.393 0.607 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.338 0.662 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -21.330 2.407 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.025 4.025 13 O -0.275 6.275 14 C -0.016 4.016 15 C -0.096 4.096 16 H 0.100 0.900 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.098 4.098 22 H 0.097 0.903 23 C -0.073 4.073 24 N -0.382 5.382 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.835 -20.801 1.758 20.891 hybrid contribution -0.188 0.546 0.872 1.046 sum 0.648 -20.255 2.630 20.435 Atomic orbital electron populations 1.69612 1.05947 1.28212 1.50545 1.25269 0.95658 0.99719 0.97261 0.85835 0.79239 0.80661 0.78425 1.20359 1.20901 1.19359 1.19713 0.93422 0.82029 1.47686 0.87830 1.41755 1.09205 1.04282 1.64690 1.19576 0.88396 0.84367 0.84871 1.90541 1.13718 1.86987 1.54680 1.22147 0.91997 0.87649 1.00754 1.88010 1.31852 1.12402 1.95248 1.22614 0.95252 0.83902 0.99805 1.21084 0.96759 0.92095 0.99638 0.89983 1.21576 0.97336 0.99733 0.96590 1.21534 0.98015 0.94326 1.01794 1.21605 0.99135 0.97505 0.97710 1.21558 0.97289 0.98243 0.98097 1.21111 0.95546 0.94000 0.99104 0.90266 1.22050 0.95946 0.92343 0.97006 1.58777 1.23974 1.04981 1.50457 0.91829 0.77380 0.91947 0.92007 0.93520 0.93570 0.92277 0.90423 0.91861 0.92189 0.92333 0.92285 0.91948 0.91607 0.94581 0.90856 0.84937 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 10 C 0.44 11.08 7.86 -10.99 -0.09 10.99 16 11 O -0.58 -16.78 16.08 -14.37 -0.23 -17.01 16 12 C 0.05 1.04 6.42 36.00 0.23 1.27 16 13 O -0.36 -6.75 9.41 -55.14 -0.52 -7.26 16 14 C 0.06 0.84 4.82 37.16 0.18 1.02 16 15 C -0.08 -0.92 2.20 -90.62 -0.20 -1.12 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.38 4.83 -26.73 -0.13 -1.51 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.01 5.65 -26.73 -0.15 -1.16 16 20 C -0.11 -0.95 5.23 -26.71 -0.14 -1.09 16 21 C -0.08 -0.75 2.40 -90.60 -0.22 -0.97 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 C 0.06 0.51 5.32 -3.83 -0.02 0.49 16 24 N -0.85 -6.68 9.62 -10.37 -0.10 -6.78 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 27 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.58 6.59 -51.93 -0.34 0.23 16 31 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 32 H 0.08 1.16 7.82 -51.93 -0.41 0.75 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 6.32 -51.93 -0.33 0.14 16 37 H 0.06 0.45 6.68 -51.93 -0.35 0.10 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.04 0.32 4.83 -51.93 -0.25 0.07 16 40 H 0.07 0.72 6.29 -51.93 -0.33 0.39 16 41 H 0.34 2.27 7.25 -39.29 -0.28 1.99 16 42 H 0.34 2.19 9.08 -39.29 -0.36 1.83 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -32.22 328.19 -7.81 -40.03 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.62 Total: 10.06 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.93 Total: -1.55 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.57 Total: -45.41 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.75 Total: -24.27 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.22 -7.81 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.331 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds