Wall clock time and date at job start Mon Mar 30 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00142 * 2 1 4 4 H 1.48492 * 109.47149 * 269.99840 * 3 2 1 5 5 H 1.48507 * 109.46909 * 29.99808 * 3 2 1 6 6 H 1.48500 * 109.46768 * 149.99566 * 3 2 1 7 7 C 1.38951 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99875 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00292 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99876 * 179.97438 * 10 9 7 13 13 O 1.42909 * 109.47273 * 179.97438 * 12 10 9 14 14 C 1.42898 * 114.00340 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47175 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.46952 * 54.99908 * 15 14 13 17 17 C 1.53002 * 109.46817 * 294.99848 * 15 14 13 18 18 C 1.52997 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47127 * 60.00361 * 18 17 15 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52996 * 109.47131 * 175.00213 * 15 14 13 22 22 H 1.09001 * 109.46993 * 300.00131 * 21 15 14 23 23 C 1.53004 * 109.47467 * 59.99284 * 21 15 14 24 24 N 1.46898 * 109.47352 * 185.00154 * 23 21 15 25 25 H 0.96999 * 119.99858 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00513 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47308 * 59.99950 * 12 10 9 28 28 H 1.09004 * 109.47273 * 299.99472 * 12 10 9 29 29 H 1.09001 * 109.46861 * 59.99686 * 14 13 12 30 30 H 1.09002 * 109.46962 * 300.00205 * 14 13 12 31 31 H 1.09002 * 109.47070 * 60.00180 * 17 15 14 32 32 H 1.08996 * 109.47407 * 299.99780 * 17 15 14 33 33 H 1.09001 * 109.47502 * 300.00518 * 18 17 15 34 34 H 1.09001 * 109.47289 * 180.02562 * 18 17 15 35 35 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 36 36 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 38 38 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 39 39 H 1.08998 * 109.47439 * 305.00903 * 23 21 15 40 40 H 1.09003 * 109.46165 * 65.00357 * 23 21 15 41 41 H 1.00902 * 110.99553 * 180.02562 * 24 23 21 42 42 H 1.00911 * 110.99927 * 303.95565 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6528 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 8 2.1723 -5.9491 0.0027 14 6 1.5578 -7.2392 0.0038 15 6 2.6407 -8.3200 0.0049 16 1 3.3142 -8.1586 0.8466 17 6 3.4323 -8.2499 -1.3025 18 6 4.5149 -9.3311 -1.3017 19 6 3.8602 -10.7082 -1.1751 20 6 3.0686 -10.7782 0.1323 21 6 1.9866 -9.6972 0.1318 22 1 1.4225 -9.7471 1.0632 23 6 1.0411 -9.9237 -1.0496 24 7 0.3237 -11.1925 -0.8665 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8920 29 1 0.9373 -7.3469 -0.8859 30 1 0.9379 -7.3456 0.8941 31 1 3.8984 -7.2687 -1.3930 32 1 2.7589 -8.4113 -2.1442 33 1 5.1885 -9.1703 -0.4600 34 1 5.0792 -9.2810 -2.2329 35 1 3.1867 -10.8691 -2.0168 36 1 4.6314 -11.4785 -1.1750 37 1 2.6026 -11.7594 0.2227 38 1 3.7421 -10.6174 0.9740 39 1 0.3235 -9.1050 -1.1029 40 1 1.6175 -9.9623 -1.9739 41 1 -0.3073 -11.3651 -1.6347 42 1 0.9692 -11.9593 -0.7498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089535360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:46 Heat of formation + Delta-G solvation = -109.300663 kcal Electronic energy + Delta-G solvation = -21015.014465 eV Core-core repulsion = 17800.833763 eV Total energy + Delta-G solvation = -3214.180702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.89008 -38.33594 -36.70781 -34.23398 -33.89058 -32.05057 -31.23356 -30.34005 -27.83031 -25.59340 -24.80394 -24.16112 -22.16210 -21.34899 -19.42906 -18.53090 -17.92977 -16.57363 -16.30655 -15.94750 -15.78098 -15.38284 -14.86539 -14.56862 -14.42893 -13.84772 -13.73835 -13.58241 -13.33481 -13.00834 -12.78105 -12.29416 -12.00263 -11.92136 -11.70326 -11.53170 -11.28789 -11.14647 -11.06702 -10.91266 -10.38737 -10.34577 -10.22746 -10.10650 -10.03602 -9.52394 -9.25200 -8.86349 -8.33139 -7.97600 -6.41837 -3.82881 3.18598 3.27057 3.32957 3.73452 3.89072 4.23528 4.29409 4.54903 4.57075 4.70345 4.96373 5.01761 5.13116 5.17199 5.24255 5.27141 5.32278 5.42080 5.50384 5.52720 5.54282 5.62820 5.65528 5.72344 5.85410 5.90575 5.94499 6.00284 6.07935 6.08834 6.22647 6.24835 6.40551 6.46966 6.88090 7.15860 7.49344 7.55517 8.05721 8.61317 9.17664 9.52213 10.04265 10.76004 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.003178 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.424090 B = 8808.699187 C = 9282.878414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.443 3.557 11 O -0.576 6.576 12 C 0.055 3.945 13 O -0.357 6.357 14 C 0.061 3.939 15 C -0.077 4.077 16 H 0.082 0.918 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.122 4.122 20 C -0.114 4.114 21 C -0.079 4.079 22 H 0.079 0.921 23 C 0.057 3.943 24 N -0.852 5.852 25 H 0.272 0.728 26 H 0.393 0.607 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.339 0.661 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -21.330 -2.383 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.459 6.459 12 C -0.025 4.025 13 O -0.275 6.275 14 C -0.016 4.016 15 C -0.096 4.096 16 H 0.100 0.900 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.152 4.152 21 C -0.098 4.098 22 H 0.097 0.903 23 C -0.074 4.074 24 N -0.382 5.382 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.836 -20.801 -1.722 20.889 hybrid contribution -0.187 0.546 -0.895 1.065 sum 0.649 -20.255 -2.617 20.434 Atomic orbital electron populations 1.69611 1.05947 1.28212 1.50549 1.25267 0.95657 0.99716 0.97260 0.85835 0.79252 0.80669 0.78413 1.20371 1.20893 1.19351 1.19711 0.93423 0.82031 1.47684 0.87830 1.41753 1.09205 1.04282 1.64691 1.19574 0.88394 0.84367 0.84870 1.90540 1.13720 1.86984 1.54678 1.22152 0.91996 0.87648 1.00754 1.88011 1.31857 1.12402 1.95249 1.22612 0.95250 0.83903 0.99805 1.21083 0.96753 0.92093 0.99642 0.89981 1.21576 0.97341 0.99724 0.96594 1.21535 0.98012 0.94327 1.01800 1.21605 0.99129 0.97504 0.97712 1.21537 0.97307 0.98242 0.98100 1.21092 0.95560 0.93998 0.99104 0.90265 1.22054 0.95950 0.92343 0.97009 1.58781 1.24015 1.04984 1.50411 0.91829 0.77379 0.92012 0.91938 0.93566 0.93530 0.90417 0.92282 0.91869 0.92189 0.92280 0.92332 0.91943 0.91617 0.90858 0.94578 0.84905 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.50 9.68 -14.94 -0.14 -8.65 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 10 C 0.44 11.08 7.86 -10.98 -0.09 10.99 16 11 O -0.58 -16.78 16.08 -14.36 -0.23 -17.01 16 12 C 0.05 1.04 6.42 36.01 0.23 1.27 16 13 O -0.36 -6.75 9.41 -55.14 -0.52 -7.27 16 14 C 0.06 0.84 4.82 37.16 0.18 1.02 16 15 C -0.08 -0.92 2.20 -90.62 -0.20 -1.12 16 16 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.11 -1.38 4.83 -26.73 -0.13 -1.51 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.00 5.65 -26.73 -0.15 -1.16 16 20 C -0.11 -0.95 5.22 -26.76 -0.14 -1.09 16 21 C -0.08 -0.75 2.40 -90.65 -0.22 -0.97 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 C 0.06 0.51 5.32 -3.82 -0.02 0.49 16 24 N -0.85 -6.68 9.62 -10.37 -0.10 -6.78 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.58 6.60 -51.93 -0.34 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.16 7.82 -51.93 -0.41 0.75 16 32 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.47 6.32 -51.93 -0.33 0.15 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.45 6.67 -51.93 -0.35 0.10 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.72 6.29 -51.93 -0.33 0.39 16 40 H 0.04 0.32 4.82 -51.93 -0.25 0.07 16 41 H 0.34 2.19 9.08 -39.29 -0.36 1.83 16 42 H 0.34 2.27 7.24 -39.29 -0.28 1.99 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -32.21 328.16 -7.81 -40.03 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.62 Total: 10.06 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.93 Total: -1.55 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.57 Total: -45.41 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.75 Total: -24.27 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.21 -7.81 -40.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.275 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds