Wall clock time and date at job start Mon Mar 30 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86807 * 120.00142 * 2 1 4 4 H 1.48492 * 109.47149 * 269.99840 * 3 2 1 5 5 H 1.48507 * 109.46909 * 29.99808 * 3 2 1 6 6 H 1.48500 * 109.46768 * 149.99566 * 3 2 1 7 7 C 1.38951 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00183 * 180.02562 * 7 2 1 9 9 N 1.37091 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99875 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00292 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99876 * 179.97438 * 10 9 7 13 13 O 1.42909 * 109.47273 * 179.97438 * 12 10 9 14 14 C 1.42898 * 114.00340 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47175 * 180.02562 * 14 13 12 16 16 H 1.08996 * 109.46952 * 54.99908 * 15 14 13 17 17 C 1.53002 * 109.46817 * 294.99848 * 15 14 13 18 18 C 1.52997 * 109.46817 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47127 * 60.00361 * 18 17 15 20 20 C 1.52999 * 109.46626 * 299.99539 * 19 18 17 21 21 C 1.52996 * 109.47131 * 175.00213 * 15 14 13 22 22 H 1.09001 * 109.46993 * 300.00131 * 21 15 14 23 23 C 1.53004 * 109.47467 * 59.99284 * 21 15 14 24 24 N 1.46898 * 109.47352 * 185.00154 * 23 21 15 25 25 H 0.96999 * 119.99858 * 0.02562 * 1 2 3 26 26 H 0.97000 * 120.00513 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47308 * 59.99950 * 12 10 9 28 28 H 1.09004 * 109.47273 * 299.99472 * 12 10 9 29 29 H 1.09001 * 109.46861 * 59.99686 * 14 13 12 30 30 H 1.09002 * 109.46962 * 300.00205 * 14 13 12 31 31 H 1.09002 * 109.47070 * 60.00180 * 17 15 14 32 32 H 1.08996 * 109.47407 * 299.99780 * 17 15 14 33 33 H 1.09001 * 109.47502 * 300.00518 * 18 17 15 34 34 H 1.09001 * 109.47289 * 180.02562 * 18 17 15 35 35 H 1.08993 * 109.46955 * 60.00011 * 19 18 17 36 36 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 37 37 H 1.09002 * 109.46719 * 180.02562 * 20 19 18 38 38 H 1.08993 * 109.47839 * 299.99931 * 20 19 18 39 39 H 1.08998 * 109.47439 * 305.00903 * 23 21 15 40 40 H 1.09003 * 109.46165 * 65.00357 * 23 21 15 41 41 H 1.00902 * 110.99553 * 180.02562 * 24 23 21 42 42 H 1.00911 * 110.99927 * 303.95565 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4455 2.6528 0.7000 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 8 2.1723 -5.9491 0.0027 14 6 1.5578 -7.2392 0.0038 15 6 2.6407 -8.3200 0.0049 16 1 3.3142 -8.1586 0.8466 17 6 3.4323 -8.2499 -1.3025 18 6 4.5149 -9.3311 -1.3017 19 6 3.8602 -10.7082 -1.1751 20 6 3.0686 -10.7782 0.1323 21 6 1.9866 -9.6972 0.1318 22 1 1.4225 -9.7471 1.0632 23 6 1.0411 -9.9237 -1.0496 24 7 0.3237 -11.1925 -0.8665 25 1 -0.4850 0.8400 -0.0004 26 1 0.3533 -2.3906 0.0005 27 1 0.6173 -4.9212 -0.8880 28 1 0.6167 -4.9201 0.8920 29 1 0.9373 -7.3469 -0.8859 30 1 0.9379 -7.3456 0.8941 31 1 3.8984 -7.2687 -1.3930 32 1 2.7589 -8.4113 -2.1442 33 1 5.1885 -9.1703 -0.4600 34 1 5.0792 -9.2810 -2.2329 35 1 3.1867 -10.8691 -2.0168 36 1 4.6314 -11.4785 -1.1750 37 1 2.6026 -11.7594 0.2227 38 1 3.7421 -10.6174 0.9740 39 1 0.3235 -9.1050 -1.1029 40 1 1.6175 -9.9623 -1.9739 41 1 -0.3073 -11.3651 -1.6347 42 1 0.9692 -11.9593 -0.7498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089535360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:46 Heat of formation + Delta-G solvation = -132.355490 kcal Electronic energy + Delta-G solvation = -21016.014197 eV Core-core repulsion = 17800.833763 eV Total energy + Delta-G solvation = -3215.180434 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81637 -40.15459 -38.17252 -35.99386 -34.93845 -33.38082 -32.96102 -31.10453 -29.43140 -26.88878 -25.90970 -25.55810 -22.99921 -22.24540 -21.34666 -20.02753 -19.32139 -18.03631 -17.52386 -17.14322 -16.80743 -16.58933 -16.57352 -15.84696 -15.62396 -15.49537 -14.87952 -14.74713 -14.51323 -14.07537 -13.83948 -13.57594 -13.50446 -13.13011 -12.95609 -12.83396 -12.67989 -12.46392 -12.34467 -12.12582 -11.96718 -11.79069 -11.56482 -11.20540 -10.97266 -10.89274 -10.54305 -10.37280 -10.07568 -9.48035 -8.50637 -6.00470 1.36556 1.41104 1.54168 1.95547 2.19161 2.49892 3.15485 3.43213 3.57200 3.75736 3.85401 3.93474 4.12890 4.18489 4.18820 4.36220 4.37997 4.40801 4.41861 4.45662 4.53835 4.63205 4.65763 4.73050 4.81219 4.91876 5.06331 5.13264 5.20203 5.26802 5.31041 5.37536 5.42364 5.51514 5.57285 5.89803 6.22472 6.29547 6.56253 6.65893 7.07294 7.47198 8.03246 8.66736 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.040138 B = 0.003178 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.424090 B = 8808.699187 C = 9282.878414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.565 5.565 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.067 3.933 13 O -0.390 6.390 14 C 0.056 3.944 15 C -0.074 4.074 16 H 0.064 0.936 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.071 4.071 22 H 0.075 0.925 23 C 0.061 3.939 24 N -0.855 5.855 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.348 0.652 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 -22.521 -2.660 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.203 5.203 10 C 0.221 3.779 11 O -0.513 6.513 12 C -0.013 4.013 13 O -0.309 6.309 14 C -0.020 4.020 15 C -0.093 4.093 16 H 0.083 0.917 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.089 4.089 22 H 0.094 0.906 23 C -0.070 4.070 24 N -0.387 5.387 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.161 0.839 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.296 -22.015 -2.003 22.108 hybrid contribution 0.129 0.883 -0.808 1.204 sum -0.167 -21.132 -2.811 21.318 Atomic orbital electron populations 1.69662 1.06821 1.29563 1.49684 1.26071 0.96602 1.02406 0.95870 0.84900 0.77875 0.76593 0.78793 1.19441 1.19202 1.19827 1.19678 0.92760 0.83840 1.50545 0.90394 1.41791 1.09424 1.04312 1.64733 1.20658 0.88194 0.86064 0.82970 1.90499 1.16181 1.88007 1.56611 1.21996 0.91184 0.84732 1.03353 1.87985 1.33221 1.14065 1.95581 1.22897 0.96034 0.81909 1.01138 1.21080 0.96245 0.93158 0.98832 0.91710 1.21517 0.97942 0.98471 0.97040 1.21529 0.97403 0.94956 1.01729 1.21565 0.99507 0.96329 0.97898 1.21538 0.96873 0.98532 0.98014 1.21008 0.95951 0.92657 0.99332 0.90615 1.21947 0.95624 0.92804 0.96602 1.58740 1.24247 1.04738 1.50987 0.91044 0.76622 0.89148 0.89181 0.91942 0.92259 0.94222 0.91452 0.92663 0.91780 0.91534 0.90887 0.90122 0.92026 0.91657 0.94330 0.83888 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.34 -19.74 9.68 84.04 0.81 -18.92 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.56 -29.93 5.29 -306.99 -1.62 -31.56 16 10 C 0.43 22.18 7.86 87.66 0.69 22.87 16 11 O -0.63 -38.01 16.08 15.97 0.26 -37.76 16 12 C 0.07 2.50 6.42 71.24 0.46 2.96 16 13 O -0.39 -14.78 9.41 -129.95 -1.22 -16.00 16 14 C 0.06 1.50 4.82 71.98 0.35 1.84 16 15 C -0.07 -1.75 2.20 -10.79 -0.02 -1.77 16 16 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 17 C -0.11 -2.71 4.83 30.59 0.15 -2.57 16 18 C -0.12 -2.31 5.92 30.60 0.18 -2.12 16 19 C -0.12 -1.65 5.65 30.60 0.17 -1.48 16 20 C -0.11 -1.62 5.22 30.58 0.16 -1.46 16 21 C -0.07 -1.24 2.40 -10.81 -0.03 -1.26 16 22 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 23 C 0.06 0.96 5.32 86.30 0.46 1.42 16 24 N -0.86 -11.17 9.62 -186.72 -1.80 -12.96 16 25 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 26 H 0.40 19.69 7.90 -92.71 -0.73 18.96 16 27 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 28 H 0.09 2.86 8.14 -2.39 -0.02 2.85 16 29 H 0.06 1.46 6.60 -2.39 -0.02 1.44 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 32 H 0.07 1.49 6.54 -2.39 -0.02 1.47 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 0.88 6.32 -2.39 -0.02 0.86 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.91 6.67 -2.39 -0.02 0.89 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.14 6.29 -2.39 -0.02 1.13 16 40 H 0.04 0.59 4.82 -2.39 -0.01 0.58 16 41 H 0.35 3.59 9.08 -89.69 -0.81 2.78 16 42 H 0.35 3.61 7.24 -89.69 -0.65 2.96 16 Total: -1.00 -70.77 328.16 0.62 -70.15 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -1.15 Total: 32.67 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 3.84 Total: -0.53 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.14 Total: -93.75 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.97 Total: -53.76 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.77 0.62 -70.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089535360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.206 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds