Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 O 1.42895 * 109.46947 * 180.02562 * 13 11 10 15 15 C 1.42904 * 113.99647 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47113 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.02048 * 54.29485 * 16 15 14 18 18 C 1.54267 * 110.03081 * 292.90630 * 16 15 14 19 19 C 1.54962 * 104.15866 * 217.13972 * 18 16 15 20 20 C 1.54893 * 102.78075 * 37.88340 * 19 18 16 21 21 C 1.53875 * 110.03150 * 175.68629 * 16 15 14 22 22 H 1.08991 * 110.03270 * 359.95231 * 21 16 15 23 23 C 1.52998 * 110.03367 * 238.56271 * 21 16 15 24 24 N 1.46895 * 109.47230 * 175.00202 * 23 21 16 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 30 30 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 31 31 H 1.09001 * 109.47068 * 299.99474 * 15 14 13 32 32 H 1.08996 * 109.47513 * 59.99317 * 15 14 13 33 33 H 1.09004 * 110.48474 * 335.78074 * 18 16 15 34 34 H 1.08995 * 110.48995 * 98.42456 * 18 16 15 35 35 H 1.09003 * 110.71569 * 279.57085 * 19 18 16 36 36 H 1.08999 * 110.92688 * 156.29899 * 19 18 16 37 37 H 1.09000 * 110.48265 * 203.40862 * 20 19 18 38 38 H 1.09004 * 110.59373 * 80.81950 * 20 19 18 39 39 H 1.08997 * 109.47608 * 295.00510 * 23 21 16 40 40 H 1.09000 * 109.46695 * 55.00308 * 23 21 16 41 41 H 1.00905 * 111.00198 * 180.02562 * 24 23 21 42 42 H 1.00904 * 110.99784 * 303.95449 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0187 -7.2663 0.0015 15 6 2.8587 -8.4224 0.0026 16 6 1.9915 -9.6829 0.0018 17 1 1.2885 -9.6516 -0.8307 18 6 1.2256 -9.7983 1.3359 19 6 1.2197 -11.3179 1.6393 20 6 2.6249 -11.7671 1.1673 21 6 2.8805 -10.9342 -0.1058 22 1 3.9296 -10.6435 -0.1582 23 6 2.4985 -11.7434 -1.3468 24 7 3.4303 -12.8681 -1.5039 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 3.1568 -3.4353 0.0009 29 1 3.3599 -5.9714 -0.8883 30 1 3.3598 -5.9706 0.8916 31 1 3.4886 -8.4147 -0.8869 32 1 3.4873 -8.4140 0.8930 33 1 1.7472 -9.2543 2.1235 34 1 0.2071 -9.4267 1.2246 35 1 0.4406 -11.8222 1.0675 36 1 1.0936 -11.5014 2.7063 37 1 2.6265 -12.8317 0.9334 38 1 3.3742 -11.5430 1.9266 39 1 1.4839 -12.1252 -1.2336 40 1 2.5497 -11.1034 -2.2277 41 1 3.1992 -13.4182 -2.3177 42 1 4.3848 -12.5437 -1.5463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089536666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -113.177236 kcal Electronic energy + Delta-G solvation = -20371.086007 eV Core-core repulsion = 17156.737205 eV Total energy + Delta-G solvation = -3214.348802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.56268 -38.87885 -37.03175 -34.43439 -34.30316 -32.47272 -30.76235 -28.98921 -28.27220 -26.03517 -25.11494 -23.09119 -22.61045 -20.55407 -20.05073 -19.61347 -17.58413 -16.92228 -16.41386 -16.16405 -15.76232 -15.74361 -14.93596 -14.86213 -14.58747 -14.23008 -13.81617 -13.70271 -13.41216 -12.98446 -12.54062 -12.43664 -12.29593 -11.92578 -11.65537 -11.27904 -11.09257 -11.05185 -11.04449 -10.87267 -10.79101 -10.68365 -10.64856 -10.17431 -9.66852 -9.17927 -9.07640 -8.80677 -8.71180 -8.04367 -6.53557 -4.27491 3.21817 3.22051 3.36631 3.38197 3.57398 4.07664 4.27322 4.39892 4.43049 4.53416 4.65365 4.96743 4.98566 5.09983 5.17428 5.22267 5.25096 5.26363 5.31293 5.36970 5.39046 5.40961 5.54504 5.57352 5.64202 5.81722 5.88824 6.00231 6.10013 6.21685 6.27189 6.71181 6.93285 7.01619 7.09346 7.19500 7.29215 7.62634 8.24050 8.41966 8.68372 8.93740 9.46392 10.86619 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047411 B = 0.002632 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.444438 B =10634.166217 C =10864.766445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.241 3.759 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.536 6.536 13 C 0.045 3.955 14 O -0.359 6.359 15 C 0.067 3.933 16 C -0.086 4.086 17 H 0.082 0.918 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.083 4.083 22 H 0.070 0.930 23 C 0.067 3.933 24 N -0.851 5.851 25 H 0.273 0.727 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.393 0.607 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.027 0.973 41 H 0.341 0.659 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.020 -23.333 -0.616 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.184 4.184 3 Si 0.904 3.096 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.662 4.662 8 H 0.076 0.924 9 C 0.120 3.880 10 N -0.358 5.358 11 C 0.282 3.718 12 O -0.413 6.413 13 C -0.035 4.035 14 O -0.277 6.277 15 C -0.010 4.010 16 C -0.105 4.105 17 H 0.100 0.900 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.102 4.102 22 H 0.088 0.912 23 C -0.064 4.064 24 N -0.380 5.380 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.226 0.774 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.153 0.847 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.437 -22.082 0.084 23.639 hybrid contribution 1.332 -1.045 -0.984 1.958 sum 9.769 -23.127 -0.900 25.122 Atomic orbital electron populations 1.70759 1.06876 1.31100 1.44802 1.25899 0.96432 1.02769 0.93283 0.83437 0.74798 0.74832 0.76563 1.20532 1.21265 1.21284 1.22053 0.94556 0.91448 1.58178 0.92440 1.19184 0.88962 0.83269 0.96574 1.46188 1.11133 1.05377 1.73070 1.20159 0.89443 0.84037 0.78138 1.90681 1.16656 1.84666 1.49344 1.22259 0.94358 0.85001 1.01892 1.88034 1.32216 1.12099 1.95328 1.22682 0.92932 0.85553 0.99818 1.21772 0.97159 0.91791 0.99796 0.89963 1.22366 1.00891 0.95754 0.96085 1.22555 0.97253 0.95957 1.00746 1.22337 0.96638 1.00312 0.95721 1.21717 0.99182 0.93839 0.95458 0.91195 1.21894 0.96984 0.91428 0.96066 1.58718 1.06551 1.24804 1.47912 0.91657 0.96434 0.96459 0.77423 0.90899 0.90825 0.93635 0.93221 0.91498 0.91118 0.91714 0.91719 0.90324 0.92068 0.90745 0.95450 0.84699 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.65 55.43 0.76 -26.67 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 24.35 29.90 -169.99 -5.08 19.27 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.62 -17.20 9.28 -34.44 -0.32 -17.52 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 9 C 0.24 6.45 4.74 -5.19 -0.02 6.42 16 10 N -0.71 -15.15 5.55 -61.47 -0.34 -15.49 16 11 C 0.50 10.38 7.91 -10.98 -0.09 10.29 16 12 O -0.54 -13.71 16.50 -14.35 -0.24 -13.95 16 13 C 0.05 0.67 6.42 36.01 0.23 0.91 16 14 O -0.36 -5.70 9.71 -55.14 -0.54 -6.24 16 15 C 0.07 0.75 4.98 37.16 0.19 0.94 16 16 C -0.09 -0.89 2.84 -89.50 -0.25 -1.14 16 17 H 0.08 0.93 7.67 -51.93 -0.40 0.53 16 18 C -0.11 -1.22 6.22 -25.03 -0.16 -1.38 16 19 C -0.13 -1.13 6.91 -24.70 -0.17 -1.30 16 20 C -0.11 -0.92 6.29 -25.07 -0.16 -1.08 16 21 C -0.08 -0.68 2.74 -89.50 -0.25 -0.92 16 22 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 23 C 0.07 0.50 5.85 -3.83 -0.02 0.48 16 24 N -0.85 -5.42 9.12 -10.37 -0.09 -5.52 16 25 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 26 H 0.02 0.51 8.01 -51.93 -0.42 0.10 16 27 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 28 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.50 8.02 -51.93 -0.42 0.08 16 33 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.67 7.48 -51.93 -0.39 0.28 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.34 1.71 9.08 -39.29 -0.36 1.35 16 42 H 0.34 1.83 8.99 -39.29 -0.35 1.47 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -33.92 344.51 -8.64 -42.57 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.18 Total: 4.62 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.12 Total: -3.78 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.32 Total: -47.68 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.77 Total: -20.19 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.92 -8.64 -42.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089536666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.612 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds