Wall clock time and date at job start Mon Mar 30 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 O 1.42895 * 109.46947 * 180.02562 * 13 11 10 15 15 C 1.42904 * 113.99647 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.47113 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.02048 * 54.29485 * 16 15 14 18 18 C 1.54267 * 110.03081 * 292.90630 * 16 15 14 19 19 C 1.54962 * 104.15866 * 217.13972 * 18 16 15 20 20 C 1.54893 * 102.78075 * 37.88340 * 19 18 16 21 21 C 1.53875 * 110.03150 * 175.68629 * 16 15 14 22 22 H 1.08991 * 110.03270 * 359.95231 * 21 16 15 23 23 C 1.52998 * 110.03367 * 238.56271 * 21 16 15 24 24 N 1.46895 * 109.47230 * 175.00202 * 23 21 16 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 30 30 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 31 31 H 1.09001 * 109.47068 * 299.99474 * 15 14 13 32 32 H 1.08996 * 109.47513 * 59.99317 * 15 14 13 33 33 H 1.09004 * 110.48474 * 335.78074 * 18 16 15 34 34 H 1.08995 * 110.48995 * 98.42456 * 18 16 15 35 35 H 1.09003 * 110.71569 * 279.57085 * 19 18 16 36 36 H 1.08999 * 110.92688 * 156.29899 * 19 18 16 37 37 H 1.09000 * 110.48265 * 203.40862 * 20 19 18 38 38 H 1.09004 * 110.59373 * 80.81950 * 20 19 18 39 39 H 1.08997 * 109.47608 * 295.00510 * 23 21 16 40 40 H 1.09000 * 109.46695 * 55.00308 * 23 21 16 41 41 H 1.00905 * 111.00198 * 180.02562 * 24 23 21 42 42 H 1.00904 * 110.99784 * 303.95449 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 8 2.0187 -7.2663 0.0015 15 6 2.8587 -8.4224 0.0026 16 6 1.9915 -9.6829 0.0018 17 1 1.2885 -9.6516 -0.8307 18 6 1.2256 -9.7983 1.3359 19 6 1.2197 -11.3179 1.6393 20 6 2.6249 -11.7671 1.1673 21 6 2.8805 -10.9342 -0.1058 22 1 3.9296 -10.6435 -0.1582 23 6 2.4985 -11.7434 -1.3468 24 7 3.4303 -12.8681 -1.5039 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 3.1568 -3.4353 0.0009 29 1 3.3599 -5.9714 -0.8883 30 1 3.3598 -5.9706 0.8916 31 1 3.4886 -8.4147 -0.8869 32 1 3.4873 -8.4140 0.8930 33 1 1.7472 -9.2543 2.1235 34 1 0.2071 -9.4267 1.2246 35 1 0.4406 -11.8222 1.0675 36 1 1.0936 -11.5014 2.7063 37 1 2.6265 -12.8317 0.9334 38 1 3.3742 -11.5430 1.9266 39 1 1.4839 -12.1252 -1.2336 40 1 2.5497 -11.1034 -2.2277 41 1 3.1992 -13.4182 -2.3177 42 1 4.3848 -12.5437 -1.5463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089536666.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:13 Heat of formation + Delta-G solvation = -138.707903 kcal Electronic energy + Delta-G solvation = -20372.193100 eV Core-core repulsion = 17156.737205 eV Total energy + Delta-G solvation = -3215.455895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82042 -40.08465 -38.18189 -36.43665 -34.93245 -34.51439 -31.67876 -30.01468 -29.51470 -27.71849 -25.98720 -24.70675 -23.78446 -21.71251 -21.32653 -20.45017 -19.48019 -18.17593 -17.64141 -17.38355 -16.83533 -16.70423 -16.16093 -16.00903 -15.66265 -15.49073 -15.34785 -14.86130 -14.46372 -14.36838 -14.35132 -13.92527 -13.41769 -13.16738 -13.13090 -12.69385 -12.53710 -12.01904 -11.91601 -11.86648 -11.77089 -11.66278 -11.50102 -11.34966 -11.05047 -10.81717 -10.78192 -10.67691 -10.03536 -9.58130 -8.81519 -6.57529 1.55774 1.56255 1.65015 1.83362 1.91477 2.55339 2.98688 3.06647 3.54436 3.65874 3.71286 3.80238 3.97529 4.13467 4.20184 4.26350 4.31234 4.38710 4.48021 4.55859 4.62971 4.67351 4.73517 4.76238 4.87628 4.89737 4.91421 5.10788 5.14759 5.22669 5.36656 5.40153 5.46138 5.50128 5.51070 6.02893 6.11602 6.23271 6.29226 6.61495 6.73737 7.20027 7.36326 8.57767 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.047411 B = 0.002632 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.444438 B =10634.166217 C =10864.766445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.035 4.035 3 Si 1.132 2.868 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.629 4.629 8 H 0.080 0.920 9 C 0.253 3.747 10 N -0.700 5.700 11 C 0.492 3.508 12 O -0.593 6.593 13 C 0.059 3.941 14 O -0.396 6.396 15 C 0.063 3.937 16 C -0.086 4.086 17 H 0.066 0.934 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.074 4.074 22 H 0.083 0.917 23 C 0.070 3.930 24 N -0.853 5.853 25 H 0.253 0.747 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.413 0.587 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.026 0.974 41 H 0.349 0.651 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.533 -23.989 -0.678 27.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.233 4.233 3 Si 0.950 3.050 4 H -0.213 1.213 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.667 4.667 8 H 0.098 0.902 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.279 3.721 12 O -0.474 6.474 13 C -0.020 4.020 14 O -0.315 6.315 15 C -0.012 4.012 16 C -0.105 4.105 17 H 0.085 0.915 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.144 4.144 21 C -0.093 4.093 22 H 0.101 0.899 23 C -0.061 4.061 24 N -0.384 5.384 25 H 0.062 0.938 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.249 0.751 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.162 0.838 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.016 -22.793 0.017 25.766 hybrid contribution 0.198 -0.942 -0.964 1.362 sum 12.214 -23.735 -0.946 26.710 Atomic orbital electron populations 1.70908 1.08364 1.29914 1.47417 1.27717 0.96334 1.07319 0.91915 0.82775 0.73896 0.69808 0.78485 1.21322 1.18682 1.18687 1.22427 0.95711 0.91501 1.57031 0.90193 1.18698 0.89408 0.85541 0.93412 1.45921 1.11309 1.04753 1.73155 1.21341 0.89855 0.84999 0.75915 1.90655 1.19675 1.85490 1.51589 1.22203 0.92240 0.82338 1.05265 1.88001 1.34434 1.13331 1.95742 1.22926 0.92837 0.83871 1.01606 1.21785 0.97281 0.92783 0.98700 0.91527 1.22357 0.99539 0.97067 0.96515 1.22530 0.97985 0.94416 1.01186 1.22293 0.96047 1.00223 0.95814 1.21645 0.99270 0.92704 0.95699 0.89889 1.21795 0.96885 0.91685 0.95721 1.58687 1.06804 1.24329 1.48533 0.93767 0.99938 0.99939 0.75057 0.87204 0.87226 0.91549 0.91452 0.91929 0.93574 0.91806 0.91136 0.90278 0.91413 0.91626 0.95618 0.83804 0.84077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.65 21.45 0.29 -57.96 16 2 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 3 Si 1.13 47.67 29.90 68.60 2.05 49.72 16 4 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 7 C -0.63 -34.53 9.28 25.60 0.24 -34.29 16 8 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 9 C 0.25 13.96 4.74 85.64 0.41 14.37 16 10 N -0.70 -29.74 5.55 -466.77 -2.59 -32.32 16 11 C 0.49 20.41 7.91 87.66 0.69 21.10 16 12 O -0.59 -31.53 16.50 16.01 0.26 -31.26 16 13 C 0.06 1.60 6.42 71.24 0.46 2.06 16 14 O -0.40 -12.05 9.71 -129.94 -1.26 -13.32 16 15 C 0.06 1.27 4.98 71.98 0.36 1.63 16 16 C -0.09 -1.69 2.84 -10.07 -0.03 -1.72 16 17 H 0.07 1.51 7.67 -2.39 -0.02 1.49 16 18 C -0.12 -2.52 6.22 31.69 0.20 -2.32 16 19 C -0.12 -2.09 6.91 31.91 0.22 -1.86 16 20 C -0.11 -1.54 6.29 31.67 0.20 -1.34 16 21 C -0.07 -1.06 2.74 -10.07 -0.03 -1.09 16 22 H 0.08 1.00 7.67 -2.39 -0.02 0.98 16 23 C 0.07 0.95 5.85 86.30 0.50 1.45 16 24 N -0.85 -9.10 9.12 -186.73 -1.70 -10.80 16 25 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 26 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 27 H -0.02 -1.06 8.01 -2.38 -0.02 -1.08 16 28 H 0.41 14.04 8.32 -92.71 -0.77 13.26 16 29 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.12 8.02 -2.39 -0.02 1.10 16 33 H 0.06 1.38 7.77 -2.38 -0.02 1.36 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.17 7.48 -2.39 -0.02 1.16 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.35 2.86 9.08 -89.69 -0.81 2.05 16 42 H 0.35 2.86 8.99 -89.69 -0.81 2.05 16 Total: -1.00 -77.12 344.51 -0.54 -77.66 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: -1.27 Total: 21.80 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 3.68 Total: -3.51 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.00 Total: -101.09 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.00 Total: -44.58 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.05 Total: 49.72 kcal Total: -77.12 -0.54 -77.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089536666.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.048 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds