Wall clock time and date at job start Mon Mar 30 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00407 * 2 1 4 4 C 1.50701 * 109.47068 * 270.00199 * 3 2 1 5 5 H 1.08005 * 120.00152 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99927 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00355 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47187 * 59.99923 * 8 6 4 10 10 H 1.48500 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47010 * 299.99978 * 8 6 4 12 12 C 1.34784 * 119.99909 * 179.97438 * 2 1 3 13 13 O 1.21586 * 119.99715 * 179.97438 * 12 2 1 14 14 N 1.34771 * 119.99831 * 359.97438 * 12 2 1 15 15 C 1.46504 * 119.99973 * 174.17718 * 14 12 2 16 16 C 1.52999 * 112.85174 * 299.22376 * 15 14 12 17 17 C 1.50701 * 109.47180 * 300.62997 * 16 15 14 18 18 O 1.20827 * 119.99729 * 354.22827 * 17 16 15 19 19 O 1.34224 * 120.00315 * 174.22975 * 17 16 15 20 20 C 1.53781 * 113.60893 * 70.41474 * 15 14 12 21 21 C 1.53956 * 87.01761 * 89.23045 * 20 15 14 22 22 C 1.53781 * 113.61563 * 168.02327 * 15 14 12 23 23 H 1.08999 * 109.46944 * 269.99916 * 1 2 3 24 24 H 1.08999 * 109.46631 * 29.99879 * 1 2 3 25 25 H 1.09004 * 109.46781 * 149.99947 * 1 2 3 26 26 H 1.09001 * 109.46682 * 29.99394 * 3 2 1 27 27 H 1.08999 * 109.47437 * 149.99982 * 3 2 1 28 28 H 0.96992 * 120.00009 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00205 * 354.18660 * 14 12 2 30 30 H 1.08997 * 109.47260 * 180.63051 * 16 15 14 31 31 H 1.09005 * 109.46912 * 60.62989 * 16 15 14 32 32 H 0.96693 * 117.00133 * 179.97438 * 19 17 16 33 33 H 1.08999 * 113.61564 * 203.74874 * 20 15 14 34 34 H 1.09002 * 113.61729 * 334.65518 * 20 15 14 35 35 H 1.08997 * 113.54257 * 270.81019 * 21 20 15 36 36 H 1.09008 * 113.66788 * 139.93243 * 21 20 15 37 37 H 1.09000 * 113.61468 * 25.34732 * 22 15 14 38 38 H 1.08996 * 113.61625 * 156.25658 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8778 -1.6728 7 7 3.5527 3.6185 -0.6732 8 14 3.4381 3.4168 -3.4340 9 1 2.1408 3.5936 -4.1347 10 1 4.1795 4.7034 -3.4340 11 1 4.2415 2.3820 -4.1333 12 6 2.1389 -1.1673 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3344 0.0016 15 6 2.1918 -3.6000 -0.1266 16 6 2.9725 -3.7067 -1.4380 17 6 2.0206 -3.5893 -2.6004 18 8 0.8295 -3.5409 -2.4032 19 8 2.4958 -3.5384 -3.8547 20 6 3.0224 -3.9618 1.1160 21 6 1.7672 -4.6773 1.6476 22 6 1.3326 -4.8377 0.1813 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6085 2.0283 0.5138 27 1 3.1500 1.1383 0.5138 28 1 4.0289 4.4447 -0.8505 29 1 0.4988 -2.3365 0.0870 30 1 3.4811 -4.6698 -1.4808 31 1 3.7087 -2.9044 -1.4889 32 1 1.8466 -3.4635 -4.5674 33 1 3.8528 -4.6356 0.9051 34 1 3.3180 -3.0973 1.7105 35 1 1.1108 -4.0303 2.2294 36 1 1.9807 -5.6232 2.1457 37 1 0.2659 -4.6793 0.0223 38 1 1.7000 -5.7515 -0.2857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094292179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:39 Heat of formation + Delta-G solvation = -92.382281 kcal Electronic energy + Delta-G solvation = -21967.922754 eV Core-core repulsion = 18618.642594 eV Total energy + Delta-G solvation = -3349.280160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.75806 -39.41339 -38.01755 -35.88125 -34.64924 -32.97493 -32.09716 -30.39692 -27.61244 -25.74042 -25.68291 -24.13917 -22.71123 -21.12563 -19.73780 -18.66651 -17.92218 -17.17793 -16.47691 -16.40709 -15.77895 -15.42669 -15.19455 -14.75907 -14.27348 -14.12888 -13.47159 -13.14197 -12.84714 -12.69519 -12.32518 -12.26919 -12.08198 -11.78270 -11.49465 -11.32179 -11.14370 -10.90470 -10.85790 -10.76478 -10.50090 -10.39004 -10.18857 -10.09107 -9.59757 -9.08519 -8.56236 -8.38174 -7.51339 -5.98871 -4.03129 2.41089 3.18607 3.34580 3.36418 3.38654 3.44165 3.99717 4.46023 4.50363 4.65409 4.70578 4.75934 4.93365 5.27953 5.34546 5.41248 5.59439 5.66061 5.70050 5.71195 5.88299 5.95327 5.97266 6.13416 6.23450 6.27077 6.32251 6.64822 6.91647 7.09165 7.44650 7.63190 7.82448 8.02013 8.06229 8.30705 8.81276 8.98222 9.44419 9.63421 11.08838 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.006200 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.890222 B = 4514.861425 C = 5174.468934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.618 5.618 3 C 0.261 3.739 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.701 3.299 13 O -0.585 6.585 14 N -0.730 5.730 15 C 0.191 3.809 16 C -0.121 4.121 17 C 0.485 3.515 18 O -0.513 6.513 19 O -0.520 6.520 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.132 4.132 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.395 0.605 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.405 0.595 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.640 -17.173 0.850 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.353 5.353 3 C 0.142 3.858 4 C -0.562 4.562 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.402 3.598 13 O -0.463 6.463 14 N -0.389 5.389 15 C 0.102 3.898 16 C -0.160 4.160 17 C 0.328 3.672 18 O -0.401 6.401 19 O -0.331 6.331 20 C -0.176 4.176 21 C -0.177 4.177 22 C -0.170 4.170 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.231 0.769 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.264 0.736 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.688 -16.947 1.259 17.628 hybrid contribution -0.789 0.558 -1.590 1.861 sum -5.477 -16.388 -0.331 17.282 Atomic orbital electron populations 1.21541 0.81968 1.02370 1.00010 1.47441 1.05530 1.06499 1.75861 1.19168 0.92288 0.77160 0.97206 1.21429 1.36243 1.06072 0.92485 0.92765 1.24918 0.95464 0.96413 0.97294 1.69922 1.38586 1.14349 1.30682 0.86585 0.78297 0.77788 0.84887 1.20366 1.21169 1.20232 1.15921 0.85522 0.80108 0.78200 1.90850 1.11460 1.86057 1.57938 1.44925 1.09627 1.03456 1.80853 1.20615 0.92960 0.84254 0.91965 1.21816 0.98580 1.06253 0.89330 1.23470 0.88848 0.71344 0.83578 1.90646 1.17945 1.45889 1.85645 1.84561 1.45728 1.85382 1.17446 1.23294 0.96672 1.00928 0.96657 1.22863 0.98202 1.00567 0.96055 1.23195 1.00624 0.96689 0.96498 0.94076 0.90764 0.92900 0.95125 0.93775 0.92731 0.76872 0.87290 0.85686 0.73647 0.89465 0.89948 0.90163 0.91337 0.90554 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.15 59.85 0.61 2.08 16 2 N -0.62 -13.72 2.86 -188.74 -0.54 -14.26 16 3 C 0.26 7.03 5.16 -5.19 -0.03 7.00 16 4 C -0.52 -15.23 9.39 -34.44 -0.32 -15.55 16 5 H 0.05 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.70 15.11 7.84 -86.92 -0.68 14.43 16 13 O -0.59 -14.66 13.85 5.29 0.07 -14.58 16 14 N -0.73 -12.05 4.09 -51.65 -0.21 -12.26 16 15 C 0.19 2.65 0.23 -131.01 -0.03 2.62 16 16 C -0.12 -1.70 5.04 -27.88 -0.14 -1.84 16 17 C 0.48 7.21 8.08 36.01 0.29 7.50 16 18 O -0.51 -8.34 15.64 -18.75 -0.29 -8.63 16 19 O -0.52 -6.80 13.42 -39.24 -0.53 -7.33 16 20 C -0.14 -1.73 7.04 -25.83 -0.18 -1.91 16 21 C -0.14 -1.43 8.00 -25.83 -0.21 -1.63 16 22 C -0.13 -1.41 6.55 -25.92 -0.17 -1.58 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 25 H 0.05 0.80 6.46 -51.93 -0.34 0.46 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.40 5.88 6.46 -40.82 -0.26 5.61 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.13 2.17 6.74 -51.93 -0.35 1.82 16 32 H 0.41 3.59 9.10 45.56 0.41 4.00 16 33 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.08 1.28 7.62 -51.93 -0.40 0.89 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 319.86 15.07 4.82 4.82 Total: -1.00 -35.15 319.86 -6.57 -41.72 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.65 Total: 6.76 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -0.96 Total: 12.78 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.01 Total: -52.82 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.75 Total: -30.54 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.15 -6.57 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094292179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.661 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds