Wall clock time and date at job start Mon Mar 30 2020 05:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00407 * 2 1 4 4 C 1.50701 * 109.47068 * 270.00199 * 3 2 1 5 5 H 1.08005 * 120.00152 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99927 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00355 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 120.00020 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47187 * 59.99923 * 8 6 4 10 10 H 1.48500 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47010 * 299.99978 * 8 6 4 12 12 C 1.34784 * 119.99909 * 179.97438 * 2 1 3 13 13 O 1.21586 * 119.99715 * 179.97438 * 12 2 1 14 14 N 1.34771 * 119.99831 * 359.97438 * 12 2 1 15 15 C 1.46504 * 119.99973 * 174.17718 * 14 12 2 16 16 C 1.52999 * 112.85174 * 299.22376 * 15 14 12 17 17 C 1.50701 * 109.47180 * 300.62997 * 16 15 14 18 18 O 1.20827 * 119.99729 * 354.22827 * 17 16 15 19 19 O 1.34224 * 120.00315 * 174.22975 * 17 16 15 20 20 C 1.53781 * 113.60893 * 70.41474 * 15 14 12 21 21 C 1.53956 * 87.01761 * 89.23045 * 20 15 14 22 22 C 1.53781 * 113.61563 * 168.02327 * 15 14 12 23 23 H 1.08999 * 109.46944 * 269.99916 * 1 2 3 24 24 H 1.08999 * 109.46631 * 29.99879 * 1 2 3 25 25 H 1.09004 * 109.46781 * 149.99947 * 1 2 3 26 26 H 1.09001 * 109.46682 * 29.99394 * 3 2 1 27 27 H 1.08999 * 109.47437 * 149.99982 * 3 2 1 28 28 H 0.96992 * 120.00009 * 180.02562 * 7 6 4 29 29 H 0.96995 * 120.00205 * 354.18660 * 14 12 2 30 30 H 1.08997 * 109.47260 * 180.63051 * 16 15 14 31 31 H 1.09005 * 109.46912 * 60.62989 * 16 15 14 32 32 H 0.96693 * 117.00133 * 179.97438 * 19 17 16 33 33 H 1.08999 * 113.61564 * 203.74874 * 20 15 14 34 34 H 1.09002 * 113.61729 * 334.65518 * 20 15 14 35 35 H 1.08997 * 113.54257 * 270.81019 * 21 20 15 36 36 H 1.09008 * 113.66788 * 139.93243 * 21 20 15 37 37 H 1.09000 * 113.61468 * 25.34732 * 22 15 14 38 38 H 1.08996 * 113.61625 * 156.25658 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2418 6 6 3.1261 2.8778 -1.6728 7 7 3.5527 3.6185 -0.6732 8 14 3.4381 3.4168 -3.4340 9 1 2.1408 3.5936 -4.1347 10 1 4.1795 4.7034 -3.4340 11 1 4.2415 2.3820 -4.1333 12 6 2.1389 -1.1673 0.0005 13 8 3.3548 -1.1672 0.0001 14 7 1.4650 -2.3344 0.0016 15 6 2.1918 -3.6000 -0.1266 16 6 2.9725 -3.7067 -1.4380 17 6 2.0206 -3.5893 -2.6004 18 8 0.8295 -3.5409 -2.4032 19 8 2.4958 -3.5384 -3.8547 20 6 3.0224 -3.9618 1.1160 21 6 1.7672 -4.6773 1.6476 22 6 1.3326 -4.8377 0.1813 23 1 -0.3633 0.0000 1.0277 24 1 -0.3632 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6085 2.0283 0.5138 27 1 3.1500 1.1383 0.5138 28 1 4.0289 4.4447 -0.8505 29 1 0.4988 -2.3365 0.0870 30 1 3.4811 -4.6698 -1.4808 31 1 3.7087 -2.9044 -1.4889 32 1 1.8466 -3.4635 -4.5674 33 1 3.8528 -4.6356 0.9051 34 1 3.3180 -3.0973 1.7105 35 1 1.1108 -4.0303 2.2294 36 1 1.9807 -5.6232 2.1457 37 1 0.2659 -4.6793 0.0223 38 1 1.7000 -5.7515 -0.2857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094292179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:39 Heat of formation + Delta-G solvation = -117.824117 kcal Electronic energy + Delta-G solvation = -21969.025995 eV Core-core repulsion = 18618.642594 eV Total energy + Delta-G solvation = -3350.383401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.96878 -40.71747 -39.35430 -36.98809 -36.47327 -34.90596 -33.73996 -31.55474 -29.58865 -27.35481 -26.63511 -25.52202 -24.44576 -22.20391 -21.16212 -19.99351 -19.07292 -18.77979 -18.63345 -17.58629 -16.98211 -16.92283 -16.45892 -16.36319 -15.77214 -15.64893 -14.80233 -14.57816 -14.36650 -14.09816 -13.85863 -13.49718 -13.43061 -13.23145 -13.09581 -12.80717 -12.58795 -12.53040 -12.43269 -12.18237 -11.82084 -11.77312 -11.71687 -11.47673 -11.28216 -10.76254 -10.63575 -9.99591 -9.29961 -8.20830 -6.35975 1.26491 1.34978 1.39179 1.46690 1.86845 2.19558 2.33023 2.41822 3.07037 3.17793 3.54641 3.68818 3.78527 3.99822 4.26624 4.36951 4.40905 4.57606 4.62398 4.73047 4.82564 4.84564 4.92985 4.98549 5.12906 5.18774 5.20620 5.21994 5.41357 5.56973 5.63458 5.81874 5.84493 6.08422 6.19339 6.72528 7.02435 7.22864 7.31322 7.81408 8.85222 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.006200 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.890222 B = 4514.861425 C = 5174.468934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.630 5.630 3 C 0.279 3.721 4 C -0.541 4.541 5 H 0.045 0.955 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.278 1.278 12 C 0.696 3.304 13 O -0.629 6.629 14 N -0.712 5.712 15 C 0.167 3.833 16 C -0.122 4.122 17 C 0.483 3.517 18 O -0.530 6.530 19 O -0.522 6.522 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.114 4.114 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.023 0.977 27 H 0.001 0.999 28 H 0.268 0.732 29 H 0.405 0.595 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.423 0.577 33 H 0.109 0.891 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.770 -19.097 -0.104 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.365 5.365 3 C 0.157 3.843 4 C -0.580 4.580 5 H 0.064 0.936 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.398 3.602 13 O -0.510 6.510 14 N -0.370 5.370 15 C 0.079 3.921 16 C -0.160 4.160 17 C 0.326 3.674 18 O -0.420 6.420 19 O -0.335 6.335 20 C -0.179 4.179 21 C -0.164 4.164 22 C -0.151 4.151 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.019 0.981 28 H 0.077 0.923 29 H 0.242 0.758 30 H 0.166 0.834 31 H 0.105 0.895 32 H 0.284 0.716 33 H 0.127 0.873 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.881 -18.915 0.298 19.811 hybrid contribution -0.421 1.122 -1.285 1.757 sum -6.302 -17.793 -0.987 18.902 Atomic orbital electron populations 1.21748 0.78813 1.03166 1.02101 1.47343 1.07477 1.05385 1.76337 1.18610 0.90797 0.79148 0.95743 1.21646 1.36843 1.06432 0.93062 0.93635 1.25820 0.94908 0.96348 1.01895 1.70036 1.38924 1.14756 1.32962 0.85508 0.78740 0.77463 0.79323 1.18759 1.19993 1.20390 1.16110 0.85119 0.81067 0.77942 1.90812 1.13565 1.86840 1.59748 1.44767 1.10006 1.02902 1.79282 1.21136 0.94409 0.84133 0.92422 1.21866 0.97866 1.06921 0.89374 1.23607 0.88679 0.70927 0.84152 1.90628 1.18498 1.46816 1.86014 1.84526 1.46512 1.84925 1.17569 1.23350 0.98459 1.00298 0.95744 1.22812 0.96200 1.01245 0.96099 1.23180 1.00047 0.95528 0.96386 0.91253 0.91436 0.90590 0.95896 0.98125 0.92347 0.75768 0.83364 0.89471 0.71604 0.87256 0.93775 0.90819 0.88597 0.90489 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.83 10.15 127.77 1.30 4.13 16 2 N -0.63 -28.65 2.86 -869.29 -2.48 -31.13 16 3 C 0.28 15.66 5.16 85.63 0.44 16.10 16 4 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 5 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 6 C 0.01 0.55 5.46 84.65 0.46 1.01 16 7 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 8 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 9 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.70 30.80 7.84 179.05 1.40 32.20 16 13 O -0.63 -33.08 13.85 -3.99 -0.06 -33.13 16 14 N -0.71 -23.16 4.09 -435.60 -1.78 -24.94 16 15 C 0.17 4.40 0.23 4.13 0.00 4.41 16 16 C -0.12 -3.30 5.04 29.85 0.15 -3.15 16 17 C 0.48 13.67 8.08 71.24 0.58 14.25 16 18 O -0.53 -16.26 15.64 21.96 0.34 -15.92 16 19 O -0.52 -12.90 13.42 -51.36 -0.69 -13.59 16 20 C -0.14 -3.38 7.04 31.18 0.22 -3.16 16 21 C -0.13 -2.22 8.00 31.18 0.25 -1.97 16 22 C -0.11 -2.04 6.55 31.12 0.20 -1.84 16 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 25 H 0.08 2.17 6.46 -2.39 -0.02 2.16 16 26 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 27 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 29 H 0.40 11.44 6.46 -92.71 -0.60 10.85 16 30 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.09 3.11 6.74 -2.38 -0.02 3.09 16 32 H 0.42 6.77 9.10 -74.06 -0.67 6.09 16 33 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 34 H 0.04 1.41 7.62 -2.39 -0.02 1.39 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.12 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -79.04 319.86 2.70 -76.34 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.19 Total: 21.26 kcal Atomic # 6 Polarization: 24.64 SS G_CDS: 5.25 Total: 29.89 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.98 Total: -112.84 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -0.40 Total: -62.64 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -79.04 2.70 -76.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094292179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.489 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds