Wall clock time and date at job start Mon Mar 30 2020 05:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 120.00134 * 2 1 4 4 H 1.48490 * 109.47032 * 240.00367 * 3 2 1 5 5 H 1.48504 * 109.46586 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46852 * 120.00079 * 3 2 1 7 7 C 1.37877 * 120.00296 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99358 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46783 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00213 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99421 * 0.02562 * 11 10 9 13 13 C 1.50693 * 119.99989 * 179.97438 * 11 10 9 14 14 N 1.46910 * 109.47020 * 179.97438 * 13 11 10 15 15 C 1.46889 * 110.99872 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.47042 * 180.02562 * 15 14 13 17 17 O 1.42897 * 109.47093 * 64.99742 * 16 15 14 18 18 C 1.42898 * 114.00017 * 179.97438 * 17 16 15 19 19 C 1.54894 * 110.48190 * 93.24436 * 18 17 16 20 20 C 1.55238 * 102.58338 * 156.67678 * 19 18 17 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 0.97010 * 120.00028 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46962 * 60.00914 * 9 7 2 25 25 H 1.08993 * 109.47214 * 299.99804 * 9 7 2 26 26 H 0.97001 * 119.99871 * 359.97438 * 10 9 7 27 27 H 1.08998 * 109.47238 * 60.00135 * 13 11 10 28 28 H 1.08993 * 109.47551 * 300.00107 * 13 11 10 29 29 H 1.00895 * 110.99654 * 303.95540 * 14 13 11 30 30 H 1.09002 * 109.47275 * 60.00219 * 15 14 13 31 31 H 1.08998 * 109.47622 * 299.99686 * 15 14 13 32 32 H 1.08999 * 109.47003 * 305.00028 * 16 15 14 33 33 H 1.08999 * 109.47000 * 185.00222 * 16 15 14 34 34 H 1.09002 * 110.43427 * 330.70321 * 18 17 16 35 35 H 1.08996 * 110.75388 * 275.06031 * 19 18 17 36 36 H 1.08993 * 110.76071 * 38.44257 * 19 18 17 37 37 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 38 38 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 39 39 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 40 40 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 41 41 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 42 42 H 1.08996 * 110.07773 * 119.30576 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1049 -0.0020 13 6 2.7331 -6.0287 -0.0016 14 7 1.9985 -7.3010 -0.0015 15 6 2.9230 -8.4425 -0.0015 16 6 2.1229 -9.7467 -0.0020 17 8 1.3888 -9.8547 -1.2232 18 6 0.6038 -11.0443 -1.3262 19 6 -0.8396 -10.7860 -0.8272 20 6 -1.6505 -11.8962 -1.5481 21 6 -1.0038 -11.9915 -2.9455 22 6 0.4294 -11.4499 -2.8044 23 1 -0.4851 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 3.1566 -3.4354 -0.0009 27 1 3.3598 -5.9714 0.8883 28 1 3.3597 -5.9706 -0.8916 29 1 1.3625 -7.3511 0.7801 30 1 3.5510 -8.4014 0.8885 31 1 3.5509 -8.4016 -0.8915 32 1 1.4302 -9.7484 0.8396 33 1 2.8055 -10.5917 0.0877 34 1 1.0640 -11.8542 -0.7602 35 1 -0.9005 -10.9007 0.2550 36 1 -1.1826 -9.7973 -1.1319 37 1 -2.6988 -11.6094 -1.6317 38 1 -1.5565 -12.8445 -1.0188 39 1 -1.5636 -11.3856 -3.6580 40 1 -0.9797 -13.0298 -3.2765 41 1 0.5653 -10.5810 -3.4485 42 1 1.1498 -12.2248 -3.0664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111637477.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:40 Heat of formation + Delta-G solvation = -126.381848 kcal Electronic energy + Delta-G solvation = -20135.961302 eV Core-core repulsion = 16921.039905 eV Total energy + Delta-G solvation = -3214.921397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.51728 -39.82187 -37.55268 -36.26919 -35.84227 -34.33667 -31.21713 -29.63398 -29.42703 -28.20218 -26.47413 -24.27075 -22.89140 -21.63735 -21.38469 -21.12933 -19.01979 -18.16253 -17.52488 -17.25012 -16.81595 -16.68871 -16.31701 -16.04952 -15.72585 -15.18230 -14.84870 -14.63319 -14.21595 -14.06125 -14.02044 -13.88619 -13.64992 -13.07569 -12.93582 -12.72375 -12.62370 -12.28490 -12.23693 -12.08724 -12.03540 -11.95210 -11.51306 -11.47243 -11.30892 -10.79256 -10.72128 -10.31574 -9.82188 -9.30135 -8.28934 -6.46072 1.42898 1.47491 1.55649 1.80296 2.30050 2.51606 2.81309 3.05614 3.34504 3.67959 3.73685 3.97198 4.01118 4.15276 4.29624 4.32532 4.39913 4.48932 4.53565 4.57211 4.59054 4.63316 4.75262 4.80383 4.95284 4.97787 5.06103 5.11174 5.19618 5.24006 5.24730 5.29411 5.46087 5.48999 5.69277 5.84842 5.98776 6.32637 6.53421 6.65215 6.95441 7.23618 7.53565 8.83220 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033164 B = 0.002661 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.093107 B =10520.809483 C =11025.343373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.491 3.509 12 O -0.594 6.594 13 C 0.058 3.942 14 N -0.689 5.689 15 C 0.062 3.938 16 C 0.062 3.938 17 O -0.390 6.390 18 C 0.078 3.922 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.123 4.123 23 H 0.269 0.731 24 H -0.017 1.017 25 H -0.014 1.014 26 H 0.409 0.591 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.342 0.658 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -25.068 -0.517 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.278 3.722 12 O -0.475 6.475 13 C -0.074 4.074 14 N -0.322 5.322 15 C -0.066 4.066 16 C -0.014 4.014 17 O -0.310 6.310 18 C 0.020 3.980 19 C -0.188 4.188 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.161 4.161 23 H 0.078 0.922 24 H 0.001 0.999 25 H 0.004 0.996 26 H 0.245 0.755 27 H 0.106 0.894 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.649 -24.977 -1.351 25.882 hybrid contribution 0.331 1.135 1.046 1.578 sum 6.979 -23.842 -0.306 24.845 Atomic orbital electron populations 1.70144 1.08361 1.28645 1.49947 1.26113 0.95792 1.04046 0.93835 0.85180 0.77877 0.76437 0.79551 1.18629 1.21135 1.18504 1.21605 0.94350 0.90543 1.52956 0.89670 1.18508 0.88746 0.84477 0.93865 1.46181 1.11173 1.05509 1.73153 1.21513 0.90016 0.85024 0.75674 1.90642 1.19511 1.85425 1.51884 1.21753 0.93906 0.86975 1.04754 1.60016 1.19917 1.00627 1.51671 1.22104 0.93816 0.88165 1.02496 1.22669 0.94573 0.97376 0.86822 1.88055 1.62384 1.41927 1.38617 1.23145 0.90614 0.87023 0.97191 1.23038 0.96237 0.99221 1.00321 1.22338 0.99131 0.98553 0.95755 1.22094 0.94638 1.01826 0.97368 1.22193 0.97941 1.00846 0.95082 0.92246 0.99880 0.99577 0.75530 0.89397 0.86403 0.83906 0.91093 0.89902 0.93537 0.90361 0.90066 0.91231 0.93128 0.91460 0.89956 0.92225 0.89834 0.92539 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.99 42.70 29.54 68.60 2.03 44.72 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.56 -30.76 9.28 25.60 0.24 -30.52 16 8 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.27 15.07 5.43 85.63 0.46 15.54 16 10 N -0.71 -30.61 5.55 -466.79 -2.59 -33.20 16 11 C 0.49 20.28 7.87 87.66 0.69 20.97 16 12 O -0.59 -30.93 16.20 -3.03 -0.05 -30.98 16 13 C 0.06 1.58 6.17 85.55 0.53 2.11 16 14 N -0.69 -19.33 6.07 -517.94 -3.15 -22.48 16 15 C 0.06 1.19 6.07 86.31 0.52 1.72 16 16 C 0.06 1.15 6.07 71.98 0.44 1.59 16 17 O -0.39 -9.67 10.00 -148.98 -1.49 -11.16 16 18 C 0.08 1.51 3.33 31.67 0.11 1.61 16 19 C -0.15 -3.06 6.65 32.01 0.21 -2.84 16 20 C -0.12 -1.86 6.84 31.79 0.22 -1.64 16 21 C -0.12 -1.85 6.80 31.32 0.21 -1.63 16 22 C -0.12 -2.19 6.56 31.32 0.21 -1.98 16 23 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 24 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 25 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 26 H 0.41 14.28 8.32 -92.71 -0.77 13.50 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.34 10.21 8.43 -89.70 -0.76 9.45 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.08 1.21 7.84 -2.39 -0.02 1.19 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.27 349.13 -1.20 -77.46 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.53 Total: 27.20 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.30 Total: 5.46 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -5.45 Total: -112.70 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.54 Total: -42.14 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -76.27 -1.20 -77.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111637477.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.919 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds