Wall clock time and date at job start Mon Mar 30 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42892 * 114.00000 * 2 1 4 4 C 1.52998 * 109.47347 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46974 * 65.00152 * 4 3 2 6 6 C 1.46500 * 119.99913 * 270.00223 * 5 4 3 7 7 C 1.50696 * 109.47150 * 264.42561 * 6 5 4 8 8 H 1.08002 * 120.00006 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99791 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00359 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47048 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47085 * 120.00039 * 11 9 7 14 14 H 1.48501 * 109.47438 * 240.00308 * 11 9 7 15 15 C 1.34780 * 120.00224 * 90.00359 * 5 4 3 16 16 O 1.21278 * 119.99595 * 5.69752 * 15 5 4 17 17 C 1.50696 * 119.99997 * 185.69915 * 15 5 4 18 18 H 1.08993 * 110.85915 * 322.98975 * 17 15 5 19 19 C 1.54483 * 110.96944 * 199.19356 * 17 15 5 20 20 N 1.46763 * 105.47312 * 216.43011 * 19 17 15 21 21 C 1.34422 * 111.30337 * 17.28366 * 20 19 17 22 22 O 1.21281 * 124.94234 * 179.30786 * 21 20 19 23 23 C 1.51286 * 110.11001 * 359.16971 * 21 20 19 24 24 H 1.09001 * 109.47149 * 59.99982 * 1 2 3 25 25 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47228 * 60.00180 * 3 2 1 28 28 H 1.09005 * 109.47314 * 300.00389 * 3 2 1 29 29 H 1.08999 * 109.47295 * 305.00282 * 4 3 2 30 30 H 1.09001 * 109.47698 * 185.00267 * 4 3 2 31 31 H 1.09000 * 109.47071 * 24.42861 * 6 5 4 32 32 H 1.09003 * 109.47084 * 144.42869 * 6 5 4 33 33 H 0.96998 * 119.99747 * 180.02562 * 10 9 7 34 34 H 1.08994 * 110.24293 * 97.42760 * 19 17 15 35 35 H 1.09000 * 110.24335 * 335.43010 * 19 17 15 36 36 H 0.96994 * 124.34877 * 197.01340 * 20 19 17 37 37 H 1.09004 * 110.64098 * 225.35605 * 23 21 20 38 38 H 1.08996 * 110.38290 * 102.81094 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5362 -1.2869 -1.0746 8 1 6.2746 -0.5284 -0.8600 9 6 5.9017 -2.6160 -1.1042 10 7 5.0025 -3.5396 -1.3650 11 14 7.6744 -3.1048 -0.7755 12 1 8.4826 -1.8874 -0.5107 13 1 7.7295 -4.0017 0.4068 14 1 8.2204 -3.8138 -1.9606 15 6 4.2634 1.3330 -2.3200 16 8 4.2565 2.5413 -2.2171 17 6 4.5926 0.6912 -3.6432 18 1 5.1739 -0.2194 -3.4989 19 6 5.3355 1.6808 -4.5680 20 7 4.8450 1.3954 -5.9215 21 6 3.7014 0.6897 -5.8878 22 8 3.0773 0.3313 -6.8640 23 6 3.3080 0.4048 -4.4550 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9785 2.1765 0.0903 31 1 3.4567 -1.3612 -0.6011 32 1 3.8180 -1.2223 -2.3385 33 1 5.2596 -4.4747 -1.3855 34 1 6.4111 1.5131 -4.5134 35 1 5.0985 2.7077 -4.2896 36 1 5.2870 1.6827 -6.7356 37 1 3.0076 -0.6366 -4.3389 38 1 2.5031 1.0702 -4.1428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112677062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:54 Heat of formation + Delta-G solvation = -118.634081 kcal Electronic energy + Delta-G solvation = -21734.871498 eV Core-core repulsion = 18384.452975 eV Total energy + Delta-G solvation = -3350.418524 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39899 -38.87680 -37.46953 -35.88062 -34.99520 -32.69036 -31.51813 -29.64255 -27.40222 -27.08805 -25.98208 -23.70463 -22.91959 -21.42459 -20.35457 -18.33592 -17.20964 -17.10887 -16.47509 -16.04192 -15.97934 -15.24316 -15.02406 -14.73426 -14.58573 -14.19725 -14.02015 -13.24302 -13.16793 -12.97653 -12.73166 -12.32591 -12.04513 -11.77962 -11.57136 -11.46563 -11.14296 -11.05934 -10.93379 -10.87180 -10.57706 -10.15791 -9.82545 -9.72524 -9.44713 -9.14644 -8.87823 -8.56363 -7.79615 -6.18723 -4.26853 2.79016 3.13666 3.20483 3.29891 3.32959 3.52265 3.79085 4.10191 4.31905 4.59189 4.84359 5.09098 5.15798 5.29884 5.34217 5.44301 5.54865 5.60070 5.64000 5.66721 5.72130 5.83504 5.87412 6.02042 6.08980 6.27988 6.39689 6.77240 6.93622 7.13869 7.25839 7.42572 7.52364 7.77364 8.05868 8.25262 8.42301 8.73771 8.89891 9.40956 10.87639 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.008607 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.034637 B = 3252.376526 C = 4752.823974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.582 5.582 6 C 0.238 3.762 7 C -0.543 4.543 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.886 5.886 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.530 3.470 16 O -0.576 6.576 17 C -0.123 4.123 18 H 0.133 0.867 19 C 0.113 3.887 20 N -0.730 5.730 21 C 0.526 3.474 22 O -0.543 6.543 23 C -0.138 4.138 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.034 0.966 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.408 0.592 37 H 0.113 0.887 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 8.126 -0.159 8.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.030 4.030 4 C -0.004 4.004 5 N -0.310 5.310 6 C 0.119 3.881 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.524 5.524 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.318 3.682 16 O -0.458 6.458 17 C -0.144 4.144 18 H 0.151 0.849 19 C -0.012 4.012 20 N -0.385 5.385 21 C 0.313 3.687 22 O -0.421 6.421 23 C -0.179 4.179 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.246 0.754 37 H 0.131 0.869 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.721 8.112 -0.490 8.938 hybrid contribution 1.003 -0.183 0.015 1.020 sum -2.718 7.929 -0.474 8.396 Atomic orbital electron populations 1.22690 0.82048 1.02494 0.99197 1.88057 1.18747 1.27335 1.95206 1.23026 0.95208 0.85019 0.99777 1.21377 0.91058 0.99819 0.88186 1.48129 1.62959 1.10153 1.09803 1.19528 0.97161 0.72444 0.98993 1.21567 0.94522 0.92423 1.49684 0.92093 1.24934 0.97599 0.96352 0.94821 1.69938 1.33444 1.00979 1.48003 0.86510 0.84663 0.78666 0.78036 1.19678 1.20868 1.20861 1.19889 0.76460 0.86383 0.85510 1.90583 1.55417 1.14499 1.85286 1.22256 0.97829 1.01633 0.92718 0.84889 1.22049 0.98963 1.00150 0.80032 1.46209 1.26417 1.56671 1.09237 1.20854 0.80187 0.76402 0.91289 1.90720 1.56581 1.54235 1.40534 1.22215 0.98126 1.05594 0.91919 0.94597 0.89789 0.94709 0.93136 0.93495 0.89399 0.89237 0.93084 0.94663 0.92550 0.89925 0.89243 0.75410 0.86883 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.31 9.63 -35.23 -0.34 -6.65 16 3 C 0.05 0.72 6.28 37.16 0.23 0.95 16 4 C 0.12 2.04 5.83 -4.04 -0.02 2.02 16 5 N -0.58 -11.37 2.43 -175.06 -0.43 -11.80 16 6 C 0.24 5.39 4.58 -5.20 -0.02 5.37 16 7 C -0.54 -13.48 8.73 -34.44 -0.30 -13.78 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 11 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.53 9.97 6.76 -10.99 -0.07 9.90 16 16 O -0.58 -11.46 15.14 5.56 0.08 -11.37 16 17 C -0.12 -2.07 2.52 -90.14 -0.23 -2.29 16 18 H 0.13 2.47 6.47 -51.93 -0.34 2.14 16 19 C 0.11 1.58 7.27 -3.12 -0.02 1.56 16 20 N -0.73 -10.02 6.24 -59.20 -0.37 -10.39 16 21 C 0.53 8.80 8.44 -10.86 -0.09 8.71 16 22 O -0.54 -10.81 18.03 5.56 0.10 -10.71 16 23 C -0.14 -2.23 6.14 -26.74 -0.16 -2.39 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.53 8.07 -51.93 -0.42 1.11 16 30 H 0.09 1.46 7.35 -51.93 -0.38 1.07 16 31 H 0.05 1.27 7.23 -51.93 -0.38 0.89 16 32 H 0.04 0.82 6.06 -51.93 -0.31 0.51 16 33 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.30 6.86 -51.93 -0.36 0.94 16 36 H 0.41 4.59 8.96 -40.82 -0.37 4.23 16 37 H 0.11 1.87 7.69 -51.93 -0.40 1.47 16 38 H 0.10 1.57 7.89 -51.93 -0.41 1.16 16 LS Contribution 320.19 15.07 4.83 4.83 Total: -1.00 -30.32 320.19 -5.53 -35.85 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.44 Total: 5.26 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 0.32 Total: 13.17 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.06 Total: -45.36 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.16 Total: -28.73 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.32 -5.53 -35.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.785 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds