Wall clock time and date at job start Mon Mar 30 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42892 * 114.00000 * 2 1 4 4 C 1.52998 * 109.47347 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46974 * 65.00152 * 4 3 2 6 6 C 1.46500 * 119.99913 * 270.00223 * 5 4 3 7 7 C 1.50696 * 109.47150 * 264.42561 * 6 5 4 8 8 H 1.08002 * 120.00006 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99791 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00359 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99801 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47048 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47085 * 120.00039 * 11 9 7 14 14 H 1.48501 * 109.47438 * 240.00308 * 11 9 7 15 15 C 1.34780 * 120.00224 * 90.00359 * 5 4 3 16 16 O 1.21278 * 119.99595 * 5.69752 * 15 5 4 17 17 C 1.50696 * 119.99997 * 185.69915 * 15 5 4 18 18 H 1.08993 * 110.85915 * 322.98975 * 17 15 5 19 19 C 1.54483 * 110.96944 * 199.19356 * 17 15 5 20 20 N 1.46763 * 105.47312 * 216.43011 * 19 17 15 21 21 C 1.34422 * 111.30337 * 17.28366 * 20 19 17 22 22 O 1.21281 * 124.94234 * 179.30786 * 21 20 19 23 23 C 1.51286 * 110.11001 * 359.16971 * 21 20 19 24 24 H 1.09001 * 109.47149 * 59.99982 * 1 2 3 25 25 H 1.08995 * 109.47061 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47210 * 300.00336 * 1 2 3 27 27 H 1.09004 * 109.47228 * 60.00180 * 3 2 1 28 28 H 1.09005 * 109.47314 * 300.00389 * 3 2 1 29 29 H 1.08999 * 109.47295 * 305.00282 * 4 3 2 30 30 H 1.09001 * 109.47698 * 185.00267 * 4 3 2 31 31 H 1.09000 * 109.47071 * 24.42861 * 6 5 4 32 32 H 1.09003 * 109.47084 * 144.42869 * 6 5 4 33 33 H 0.96998 * 119.99747 * 180.02562 * 10 9 7 34 34 H 1.08994 * 110.24293 * 97.42760 * 19 17 15 35 35 H 1.09000 * 110.24335 * 335.43010 * 19 17 15 36 36 H 0.96994 * 124.34877 * 197.01340 * 20 19 17 37 37 H 1.09004 * 110.64098 * 225.35605 * 23 21 20 38 38 H 1.08996 * 110.38290 * 102.81094 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5362 -1.2869 -1.0746 8 1 6.2746 -0.5284 -0.8600 9 6 5.9017 -2.6160 -1.1042 10 7 5.0025 -3.5396 -1.3650 11 14 7.6744 -3.1048 -0.7755 12 1 8.4826 -1.8874 -0.5107 13 1 7.7295 -4.0017 0.4068 14 1 8.2204 -3.8138 -1.9606 15 6 4.2634 1.3330 -2.3200 16 8 4.2565 2.5413 -2.2171 17 6 4.5926 0.6912 -3.6432 18 1 5.1739 -0.2194 -3.4989 19 6 5.3355 1.6808 -4.5680 20 7 4.8450 1.3954 -5.9215 21 6 3.7014 0.6897 -5.8878 22 8 3.0773 0.3313 -6.8640 23 6 3.3080 0.4048 -4.4550 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8508 0.5685 0.8427 30 1 3.9785 2.1765 0.0903 31 1 3.4567 -1.3612 -0.6011 32 1 3.8180 -1.2223 -2.3385 33 1 5.2596 -4.4747 -1.3855 34 1 6.4111 1.5131 -4.5134 35 1 5.0985 2.7077 -4.2896 36 1 5.2870 1.6827 -6.7356 37 1 3.0076 -0.6366 -4.3389 38 1 2.5031 1.0702 -4.1428 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112677062.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:54 Heat of formation + Delta-G solvation = -140.618244 kcal Electronic energy + Delta-G solvation = -21735.824803 eV Core-core repulsion = 18384.452975 eV Total energy + Delta-G solvation = -3351.371828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78558 -40.31994 -38.71436 -37.25629 -36.60861 -34.55305 -32.85507 -31.04572 -28.86412 -28.66211 -27.12503 -25.15144 -24.61699 -22.75988 -21.65079 -19.83252 -18.76609 -18.46514 -18.23101 -17.40804 -17.23590 -16.62903 -16.51458 -16.16067 -15.98476 -15.69762 -15.35917 -14.63271 -14.52005 -14.40637 -14.14270 -13.93432 -13.54043 -13.24203 -13.01870 -12.77372 -12.71291 -12.58864 -12.45408 -12.33519 -12.08503 -11.84019 -11.61156 -11.21362 -10.75036 -10.59228 -10.45313 -10.11986 -9.42344 -8.14663 -6.29282 1.43004 1.43856 1.47151 1.56358 1.66232 2.21066 2.39608 2.48821 2.97002 3.16216 3.26028 3.52336 3.71423 3.95964 4.18571 4.21139 4.30850 4.43393 4.52292 4.55736 4.58610 4.63551 4.69265 4.80927 4.87940 4.92052 5.03570 5.09741 5.38135 5.69948 5.73043 5.89451 5.94210 6.13050 6.31264 6.60494 6.87616 7.17502 7.28699 7.44111 8.90681 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.008607 C = 0.005890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.034637 B = 3252.376526 C = 4752.823974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.054 3.946 4 C 0.113 3.887 5 N -0.587 5.587 6 C 0.259 3.741 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.022 3.978 10 N -0.918 5.918 11 Si 0.953 3.047 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.531 3.469 16 O -0.584 6.584 17 C -0.123 4.123 18 H 0.115 0.885 19 C 0.121 3.879 20 N -0.711 5.711 21 C 0.525 3.475 22 O -0.578 6.578 23 C -0.133 4.133 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.423 0.577 37 H 0.104 0.896 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.692 9.241 0.007 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C -0.024 4.024 4 C -0.010 4.010 5 N -0.316 5.316 6 C 0.139 3.861 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.179 4.179 10 N -0.557 5.557 11 Si 0.779 3.221 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.206 1.206 15 C 0.319 3.681 16 O -0.466 6.466 17 C -0.144 4.144 18 H 0.133 0.867 19 C -0.003 4.003 20 N -0.366 5.366 21 C 0.312 3.688 22 O -0.458 6.458 23 C -0.173 4.173 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.264 0.736 37 H 0.122 0.878 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.978 9.270 -0.317 9.742 hybrid contribution 0.745 -0.487 0.014 0.890 sum -2.233 8.783 -0.303 9.068 Atomic orbital electron populations 1.22863 0.80061 1.03285 1.00626 1.88008 1.21064 1.28343 1.95485 1.22967 0.93615 0.84764 1.01017 1.21555 0.92797 0.99776 0.86865 1.48091 1.63368 1.09012 1.11094 1.19049 0.95537 0.74153 0.97411 1.21776 0.95334 0.92379 1.48891 0.92471 1.25633 1.01028 0.96463 0.94763 1.70039 1.35208 1.01243 1.49244 0.85579 0.80487 0.78315 0.77715 1.19048 1.20917 1.20591 1.20108 0.75963 0.86235 0.85815 1.90575 1.55838 1.14694 1.85518 1.22179 0.98210 1.01536 0.92495 0.86686 1.22049 0.99866 0.99264 0.79119 1.46075 1.25267 1.55297 1.09966 1.20846 0.80646 0.76482 0.90804 1.90705 1.57821 1.55909 1.41410 1.22141 0.98127 1.05253 0.91809 0.93897 0.89446 0.92450 0.90052 0.93883 0.90176 0.88280 0.95588 0.95681 0.92534 0.87564 0.88928 0.73620 0.87790 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.58 9.63 -148.98 -1.44 -15.02 16 3 C 0.05 1.56 6.28 71.98 0.45 2.02 16 4 C 0.11 3.79 5.83 86.38 0.50 4.29 16 5 N -0.59 -22.83 2.43 -826.16 -2.01 -24.84 16 6 C 0.26 11.91 4.58 85.63 0.39 12.30 16 7 C -0.55 -27.08 8.73 25.60 0.22 -26.85 16 8 H 0.06 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.02 1.10 5.46 84.66 0.46 1.57 16 10 N -0.92 -50.01 13.29 21.45 0.28 -49.72 16 11 Si 0.95 40.70 29.54 68.60 2.03 42.73 16 12 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 14 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 15 C 0.53 19.50 6.76 87.66 0.59 20.09 16 16 O -0.58 -22.30 15.14 -3.02 -0.05 -22.34 16 17 C -0.12 -4.02 2.52 -10.48 -0.03 -4.05 16 18 H 0.12 4.25 6.47 -2.39 -0.02 4.24 16 19 C 0.12 3.14 7.27 86.83 0.63 3.78 16 20 N -0.71 -18.10 6.24 -459.80 -2.87 -20.97 16 21 C 0.53 17.11 8.44 87.90 0.74 17.85 16 22 O -0.58 -22.79 18.03 -3.03 -0.05 -22.84 16 23 C -0.13 -4.25 6.14 30.59 0.19 -4.06 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 30 H 0.10 3.10 7.35 -2.39 -0.02 3.08 16 31 H 0.03 1.33 7.23 -2.39 -0.02 1.31 16 32 H 0.03 1.20 6.06 -2.39 -0.01 1.19 16 33 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.45 6.86 -2.39 -0.02 2.43 16 36 H 0.42 8.49 8.96 -92.71 -0.83 7.66 16 37 H 0.10 3.51 7.69 -2.38 -0.02 3.50 16 38 H 0.11 3.28 7.89 -2.39 -0.02 3.26 16 Total: -1.00 -63.79 320.19 1.55 -62.24 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.24 Total: 21.91 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 5.41 Total: 28.85 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.60 Total: -95.54 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -1.54 Total: -60.20 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -63.79 1.55 -62.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112677062.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.378 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds