Wall clock time and date at job start Mon Mar 30 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 119.99523 * 2 1 4 4 O 1.21438 * 119.99657 * 185.35534 * 3 2 1 5 5 C 1.48823 * 120.00047 * 5.36427 * 3 2 1 6 6 O 1.21499 * 120.00341 * 5.97751 * 5 3 2 7 7 N 1.34779 * 119.99807 * 185.98074 * 5 3 2 8 8 C 1.36120 * 119.99997 * 179.97438 * 7 5 3 9 9 H 1.07997 * 120.00363 * 0.02562 * 8 7 5 10 10 C 1.39591 * 119.99808 * 180.02562 * 8 7 5 11 11 N 1.31007 * 120.00078 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99785 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47164 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47187 * 119.99665 * 12 10 8 15 15 H 1.48493 * 109.46848 * 240.00007 * 12 10 8 16 16 C 1.46495 * 120.00142 * 180.02562 * 2 1 3 17 17 H 1.08999 * 109.47081 * 179.97438 * 16 2 1 18 18 C 1.53000 * 109.47205 * 60.00112 * 16 2 1 19 19 C 1.52998 * 109.47299 * 180.02562 * 18 16 2 20 20 C 1.53004 * 109.47189 * 59.99508 * 19 18 16 21 21 C 1.53000 * 109.47402 * 300.00429 * 20 19 18 22 22 C 1.52995 * 109.47252 * 299.99761 * 16 2 1 23 23 H 1.08999 * 109.47136 * 59.99962 * 22 16 2 24 24 O 1.42898 * 109.47485 * 300.00303 * 22 16 2 25 25 H 1.08997 * 109.47108 * 275.24562 * 1 2 3 26 26 H 1.08995 * 109.47495 * 35.24887 * 1 2 3 27 27 H 1.08998 * 109.46744 * 155.24979 * 1 2 3 28 28 H 0.96996 * 119.99941 * 359.97438 * 7 5 3 29 29 H 0.97001 * 119.99821 * 180.02562 * 11 10 8 30 30 H 1.09003 * 109.47133 * 299.99462 * 18 16 2 31 31 H 1.08993 * 109.47403 * 59.99456 * 18 16 2 32 32 H 1.08995 * 109.47406 * 179.97438 * 19 18 16 33 33 H 1.08998 * 109.47167 * 300.00117 * 19 18 16 34 34 H 1.08999 * 109.47075 * 60.00123 * 20 19 18 35 35 H 1.08996 * 109.47064 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.46756 * 299.99889 * 21 20 19 37 37 H 1.08994 * 109.47328 * 179.97438 * 21 20 19 38 38 H 0.96694 * 114.00814 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3492 1.1696 -0.0982 5 6 1.3995 2.4533 0.1205 6 8 0.2023 2.4487 0.3277 7 7 2.0580 3.6230 -0.0003 8 6 1.3818 4.7992 0.1094 9 1 0.3176 4.7952 0.2936 10 6 2.0637 6.0107 -0.0163 11 7 3.3547 6.0157 -0.2392 12 14 1.1358 7.6249 0.1350 13 1 -0.3016 7.3480 0.3854 14 1 1.6927 8.4122 1.2642 15 1 1.2783 8.3976 -1.1250 16 6 2.1975 -1.2687 -0.0006 17 1 3.2692 -1.0695 -0.0009 18 6 1.8280 -2.0704 -1.2502 19 6 2.5925 -3.3957 -1.2505 20 6 2.2224 -4.1983 -0.0015 21 6 2.5920 -3.3965 1.2481 22 6 1.8280 -2.0715 1.2483 23 1 0.7564 -2.2707 1.2483 24 8 2.1732 -1.3227 2.4154 25 1 -0.3633 0.0940 1.0233 26 1 -0.3634 0.8392 -0.5931 27 1 -0.3633 -0.9333 -0.4302 28 1 3.0138 3.6267 -0.1654 29 1 3.8286 6.8575 -0.3262 30 1 0.7563 -2.2697 -1.2502 31 1 2.0912 -1.4985 -2.1399 32 1 2.3289 -3.9671 -2.1404 33 1 3.6642 -3.1969 -1.2501 34 1 1.1507 -4.3971 -0.0018 35 1 2.7674 -5.1422 -0.0015 36 1 3.6637 -3.1977 1.2484 37 1 2.3279 -3.9681 2.1378 38 1 1.9661 -1.7717 3.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131610045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:28 Heat of formation + Delta-G solvation = -125.734800 kcal Electronic energy + Delta-G solvation = -21575.704615 eV Core-core repulsion = 18224.978182 eV Total energy + Delta-G solvation = -3350.726434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13563 -38.64551 -36.94267 -35.61836 -34.98920 -33.83744 -31.34905 -30.24764 -29.18447 -26.45940 -25.67315 -23.50198 -22.66860 -21.37986 -19.69369 -18.87305 -18.04728 -17.24976 -16.56200 -16.20804 -15.40068 -15.13109 -14.77019 -14.59200 -14.10714 -13.93388 -13.73466 -13.52055 -12.93924 -12.93191 -12.65176 -12.24865 -12.13632 -11.89497 -11.70355 -11.57880 -11.27539 -11.16675 -10.95744 -10.76987 -10.42664 -10.36991 -10.31468 -10.17507 -9.85745 -9.65918 -8.24402 -8.09672 -7.98883 -6.61226 -3.93512 2.54217 3.17190 3.18332 3.24217 3.34598 4.06742 4.10343 4.32235 4.57549 4.68319 4.83857 4.96247 5.03423 5.09503 5.18298 5.24208 5.28442 5.34888 5.48712 5.65174 5.71946 5.83980 5.93082 5.93904 5.94652 6.08991 6.09767 6.22820 6.30086 6.53138 7.01241 7.36515 7.71281 7.73916 7.86294 8.38718 8.68826 9.02440 9.39050 9.91891 10.54002 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039958 B = 0.004245 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.571567 B = 6594.792233 C = 6658.121736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.590 5.590 3 C 0.519 3.481 4 O -0.547 6.547 5 C 0.399 3.601 6 O -0.590 6.590 7 N -0.502 5.502 8 C -0.305 4.305 9 H 0.112 0.888 10 C 0.030 3.970 11 N -0.871 5.871 12 Si 0.937 3.063 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.147 3.853 17 H 0.105 0.895 18 C -0.127 4.127 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.150 4.150 22 C 0.097 3.903 23 H 0.055 0.945 24 O -0.553 6.553 25 H 0.053 0.947 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.404 0.596 29 H 0.279 0.721 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -17.846 0.157 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.323 5.323 3 C 0.305 3.695 4 O -0.424 6.424 5 C 0.183 3.817 6 O -0.478 6.478 7 N -0.136 5.136 8 C -0.436 4.436 9 H 0.130 0.870 10 C -0.176 4.176 11 N -0.509 5.509 12 Si 0.763 3.237 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.204 1.204 16 C 0.043 3.957 17 H 0.123 0.877 18 C -0.165 4.165 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.189 4.189 22 C 0.037 3.963 23 H 0.073 0.927 24 O -0.357 6.357 25 H 0.072 0.928 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.239 0.761 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.423 -17.237 -0.243 17.408 hybrid contribution -0.023 0.270 0.499 0.568 sum -2.445 -16.967 0.256 17.144 Atomic orbital electron populations 1.21986 0.78518 1.01947 1.02876 1.47433 1.07485 1.04329 1.73016 1.20674 0.87243 0.85663 0.75931 1.90656 1.14472 1.87564 1.49720 1.18933 0.87934 0.84225 0.90559 1.90526 1.14177 1.86269 1.56869 1.41569 1.11817 1.04189 1.56060 1.19909 0.95446 0.81932 1.46266 0.86981 1.25570 0.95640 1.00377 0.96053 1.69495 1.07795 1.28994 1.44612 0.85683 0.79808 0.80143 0.78052 1.18757 1.20343 1.20362 1.20998 0.99306 0.83193 0.92245 0.87725 1.21884 1.00886 0.95947 0.97784 1.21540 1.00774 0.95500 0.97864 1.21508 1.01481 0.98322 0.94197 1.22267 1.01888 0.96178 0.98526 1.22147 0.97483 0.90151 0.86509 0.92660 1.86692 1.86838 1.46864 1.15330 0.92801 0.88376 0.93331 0.76081 0.91064 0.91287 0.90673 0.91388 0.91449 0.91800 0.91604 0.90832 0.91560 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.50 8.25 59.85 0.49 2.00 16 2 N -0.59 -11.10 2.63 -174.69 -0.46 -11.56 16 3 C 0.52 12.15 7.71 -11.88 -0.09 12.05 16 4 O -0.55 -13.76 15.82 5.42 0.09 -13.67 16 5 C 0.40 10.41 7.63 -11.88 -0.09 10.32 16 6 O -0.59 -15.78 12.93 5.37 0.07 -15.71 16 7 N -0.50 -13.86 5.24 -11.59 -0.06 -13.92 16 8 C -0.30 -8.56 9.67 -15.14 -0.15 -8.71 16 9 H 0.11 3.20 7.15 -52.49 -0.38 2.82 16 10 C 0.03 0.80 5.51 -17.40 -0.10 0.70 16 11 N -0.87 -23.86 13.03 55.53 0.72 -23.13 16 12 Si 0.94 20.41 29.56 -169.99 -5.02 15.39 16 13 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 16 C 0.15 2.25 2.20 -67.94 -0.15 2.10 16 17 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 18 C -0.13 -1.50 5.19 -26.73 -0.14 -1.63 16 19 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 20 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 21 C -0.15 -1.44 5.54 -26.76 -0.15 -1.59 16 22 C 0.10 1.23 2.79 -26.76 -0.07 1.16 16 23 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 24 O -0.55 -8.19 13.18 -35.23 -0.46 -8.66 16 25 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 26 H 0.10 1.88 5.95 -51.93 -0.31 1.58 16 27 H 0.05 0.63 6.44 -51.93 -0.33 0.29 16 28 H 0.40 11.31 7.36 -40.82 -0.30 11.01 16 29 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 30 H 0.07 0.74 6.67 -51.93 -0.35 0.39 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.37 3.62 9.08 45.56 0.41 4.03 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -32.62 310.69 -5.73 -38.35 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -4.52 Total: 14.20 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -0.76 Total: 14.03 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.20 Total: -48.61 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.31 Total: -38.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.62 -5.73 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131610045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.386 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds