Wall clock time and date at job start Mon Mar 30 2020 05:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34780 * 119.99523 * 2 1 4 4 O 1.21438 * 119.99657 * 185.35534 * 3 2 1 5 5 C 1.48823 * 120.00047 * 5.36427 * 3 2 1 6 6 O 1.21499 * 120.00341 * 5.97751 * 5 3 2 7 7 N 1.34779 * 119.99807 * 185.98074 * 5 3 2 8 8 C 1.36120 * 119.99997 * 179.97438 * 7 5 3 9 9 H 1.07997 * 120.00363 * 0.02562 * 8 7 5 10 10 C 1.39591 * 119.99808 * 180.02562 * 8 7 5 11 11 N 1.31007 * 120.00078 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99785 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47164 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47187 * 119.99665 * 12 10 8 15 15 H 1.48493 * 109.46848 * 240.00007 * 12 10 8 16 16 C 1.46495 * 120.00142 * 180.02562 * 2 1 3 17 17 H 1.08999 * 109.47081 * 179.97438 * 16 2 1 18 18 C 1.53000 * 109.47205 * 60.00112 * 16 2 1 19 19 C 1.52998 * 109.47299 * 180.02562 * 18 16 2 20 20 C 1.53004 * 109.47189 * 59.99508 * 19 18 16 21 21 C 1.53000 * 109.47402 * 300.00429 * 20 19 18 22 22 C 1.52995 * 109.47252 * 299.99761 * 16 2 1 23 23 H 1.08999 * 109.47136 * 59.99962 * 22 16 2 24 24 O 1.42898 * 109.47485 * 300.00303 * 22 16 2 25 25 H 1.08997 * 109.47108 * 275.24562 * 1 2 3 26 26 H 1.08995 * 109.47495 * 35.24887 * 1 2 3 27 27 H 1.08998 * 109.46744 * 155.24979 * 1 2 3 28 28 H 0.96996 * 119.99941 * 359.97438 * 7 5 3 29 29 H 0.97001 * 119.99821 * 180.02562 * 11 10 8 30 30 H 1.09003 * 109.47133 * 299.99462 * 18 16 2 31 31 H 1.08993 * 109.47403 * 59.99456 * 18 16 2 32 32 H 1.08995 * 109.47406 * 179.97438 * 19 18 16 33 33 H 1.08998 * 109.47167 * 300.00117 * 19 18 16 34 34 H 1.08999 * 109.47075 * 60.00123 * 20 19 18 35 35 H 1.08996 * 109.47064 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.46756 * 299.99889 * 21 20 19 37 37 H 1.08994 * 109.47328 * 179.97438 * 21 20 19 38 38 H 0.96694 * 114.00814 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3492 1.1696 -0.0982 5 6 1.3995 2.4533 0.1205 6 8 0.2023 2.4487 0.3277 7 7 2.0580 3.6230 -0.0003 8 6 1.3818 4.7992 0.1094 9 1 0.3176 4.7952 0.2936 10 6 2.0637 6.0107 -0.0163 11 7 3.3547 6.0157 -0.2392 12 14 1.1358 7.6249 0.1350 13 1 -0.3016 7.3480 0.3854 14 1 1.6927 8.4122 1.2642 15 1 1.2783 8.3976 -1.1250 16 6 2.1975 -1.2687 -0.0006 17 1 3.2692 -1.0695 -0.0009 18 6 1.8280 -2.0704 -1.2502 19 6 2.5925 -3.3957 -1.2505 20 6 2.2224 -4.1983 -0.0015 21 6 2.5920 -3.3965 1.2481 22 6 1.8280 -2.0715 1.2483 23 1 0.7564 -2.2707 1.2483 24 8 2.1732 -1.3227 2.4154 25 1 -0.3633 0.0940 1.0233 26 1 -0.3634 0.8392 -0.5931 27 1 -0.3633 -0.9333 -0.4302 28 1 3.0138 3.6267 -0.1654 29 1 3.8286 6.8575 -0.3262 30 1 0.7563 -2.2697 -1.2502 31 1 2.0912 -1.4985 -2.1399 32 1 2.3289 -3.9671 -2.1404 33 1 3.6642 -3.1969 -1.2501 34 1 1.1507 -4.3971 -0.0018 35 1 2.7674 -5.1422 -0.0015 36 1 3.6637 -3.1977 1.2484 37 1 2.3279 -3.9681 2.1378 38 1 1.9661 -1.7717 3.2464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131610045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:27 Heat of formation + Delta-G solvation = -151.577789 kcal Electronic energy + Delta-G solvation = -21576.825252 eV Core-core repulsion = 18224.978182 eV Total energy + Delta-G solvation = -3351.847070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.70069 -40.11379 -38.80219 -36.91045 -36.48092 -35.61981 -33.43860 -31.21237 -30.23911 -28.15265 -27.49306 -25.08741 -23.59938 -22.65249 -20.80940 -20.63868 -20.01802 -18.40115 -18.25594 -17.86095 -17.02814 -16.82519 -16.42285 -15.79496 -15.54849 -15.30429 -15.08103 -14.68297 -14.56764 -14.19969 -13.94150 -13.77936 -13.68635 -13.30936 -13.17371 -12.94584 -12.64232 -12.54903 -12.25025 -12.07844 -12.03384 -11.72941 -11.65639 -11.56277 -11.27415 -10.85067 -10.27084 -9.96587 -9.68963 -8.64856 -6.09796 0.61694 1.40342 1.45694 1.56438 1.73027 2.27570 2.36261 3.03912 3.15662 3.21367 3.70331 3.85581 3.95916 4.02901 4.11437 4.21507 4.22616 4.28253 4.46703 4.48031 4.73495 4.78534 4.90014 4.95076 5.11244 5.13877 5.14005 5.23583 5.26129 5.29004 5.46968 5.54614 5.70289 6.08685 6.33880 6.78276 6.89644 6.99080 7.28911 7.80718 8.51694 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039958 B = 0.004245 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.571567 B = 6594.792233 C = 6658.121736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.576 5.576 3 C 0.513 3.487 4 O -0.575 6.575 5 C 0.394 3.606 6 O -0.600 6.600 7 N -0.516 5.516 8 C -0.344 4.344 9 H 0.100 0.900 10 C -0.007 4.007 11 N -0.900 5.900 12 Si 1.012 2.988 13 H -0.262 1.262 14 H -0.267 1.267 15 H -0.265 1.265 16 C 0.136 3.864 17 H 0.071 0.929 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.143 4.143 22 C 0.097 3.903 23 H 0.074 0.926 24 O -0.589 6.589 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.398 0.602 29 H 0.288 0.712 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 -19.667 0.167 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.307 5.307 3 C 0.298 3.702 4 O -0.455 6.455 5 C 0.179 3.821 6 O -0.490 6.490 7 N -0.150 5.150 8 C -0.473 4.473 9 H 0.118 0.882 10 C -0.211 4.211 11 N -0.538 5.538 12 Si 0.833 3.167 13 H -0.186 1.186 14 H -0.192 1.192 15 H -0.190 1.190 16 C 0.033 3.967 17 H 0.090 0.910 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.181 4.181 22 C 0.038 3.962 23 H 0.092 0.908 24 O -0.397 6.397 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.117 0.883 28 H 0.232 0.768 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.712 -19.121 -0.224 19.479 hybrid contribution 0.367 0.723 0.508 0.957 sum -3.344 -18.397 0.284 18.701 Atomic orbital electron populations 1.22016 0.77087 1.03566 1.02516 1.47578 1.08474 1.04270 1.70354 1.20265 0.86872 0.86214 0.76824 1.90633 1.15285 1.87973 1.51639 1.19530 0.88052 0.85047 0.89515 1.90503 1.14631 1.86866 1.56956 1.41681 1.11490 1.04845 1.56956 1.20026 0.95274 0.83021 1.49007 0.88187 1.26577 0.96487 1.03507 0.94514 1.69570 1.09195 1.30536 1.44503 0.84615 0.78266 0.75155 0.78683 1.18614 1.19188 1.18996 1.21416 0.97169 0.82130 0.95945 0.91027 1.21877 1.02492 0.96543 0.94973 1.21555 0.99766 0.94279 0.99776 1.21524 1.02809 0.98407 0.92286 1.22218 1.00450 0.94760 1.00686 1.22234 0.98930 0.90614 0.84415 0.90807 1.86639 1.87331 1.48663 1.17038 0.93265 0.90895 0.88334 0.76818 0.90191 0.89229 0.92225 0.89128 0.92513 0.90130 0.89644 0.92371 0.89067 0.75874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.93 8.25 127.77 1.05 3.99 16 2 N -0.58 -21.74 2.63 -824.91 -2.17 -23.90 16 3 C 0.51 24.95 7.71 87.08 0.67 25.62 16 4 O -0.58 -30.36 15.82 -3.52 -0.06 -30.42 16 5 C 0.39 21.39 7.63 87.08 0.66 22.05 16 6 O -0.60 -33.14 12.93 -3.71 -0.05 -33.19 16 7 N -0.52 -29.82 5.24 -308.88 -1.62 -31.44 16 8 C -0.34 -19.96 9.67 84.35 0.82 -19.15 16 9 H 0.10 5.92 7.15 -2.91 -0.02 5.90 16 10 C -0.01 -0.39 5.51 85.14 0.47 0.08 16 11 N -0.90 -50.13 13.03 21.77 0.28 -49.84 16 12 Si 1.01 41.83 29.56 68.60 2.03 43.86 16 13 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 16 C 0.14 4.09 2.20 44.99 0.10 4.19 16 17 H 0.07 2.64 6.91 -2.39 -0.02 2.63 16 18 C -0.12 -2.61 5.19 30.59 0.16 -2.45 16 19 C -0.12 -1.81 5.92 30.60 0.18 -1.62 16 20 C -0.11 -1.38 5.92 30.60 0.18 -1.20 16 21 C -0.14 -2.33 5.54 30.58 0.17 -2.16 16 22 C 0.10 2.28 2.79 30.58 0.09 2.36 16 23 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 24 O -0.59 -16.99 13.18 -148.98 -1.96 -18.96 16 25 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 26 H 0.07 2.80 5.95 -2.39 -0.01 2.79 16 27 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 28 H 0.40 23.51 7.36 -92.71 -0.68 22.82 16 29 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 30 H 0.09 1.57 6.67 -2.39 -0.02 1.55 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.39 7.10 9.08 -74.06 -0.67 6.42 16 Total: -1.00 -73.93 310.69 0.75 -73.18 By element: Atomic # 1 Polarization: 39.25 SS G_CDS: -0.26 Total: 38.99 kcal Atomic # 6 Polarization: 27.17 SS G_CDS: 4.55 Total: 31.72 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.50 Total: -105.18 kcal Atomic # 8 Polarization: -80.50 SS G_CDS: -2.07 Total: -82.56 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -73.93 0.75 -73.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131610045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.399 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds