Wall clock time and date at job start Mon Mar 30 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99678 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00471 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00272 * 3 2 1 6 6 H 1.48492 * 109.47292 * 150.00363 * 3 2 1 7 7 C 1.37878 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99719 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 11 16 16 H 1.09002 * 108.85292 * 33.56464 * 15 14 13 17 17 C 1.50471 * 108.87791 * 275.00000 * 15 14 13 18 18 C 1.54246 * 108.51345 * 145.06373 * 17 15 14 19 19 C 1.45543 * 112.40198 * 80.00235 * 18 17 15 20 20 C 1.54236 * 112.40361 * 298.05714 * 19 18 17 21 21 C 1.50473 * 108.52581 * 79.98326 * 20 19 18 22 22 C 1.54067 * 108.87631 * 152.02250 * 15 14 13 23 23 H 1.08991 * 108.81416 * 283.35723 * 22 15 14 24 24 O 1.42900 * 108.81209 * 41.63458 * 22 15 14 25 25 H 0.96991 * 120.00374 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46739 * 59.99909 * 9 7 2 27 27 H 1.08995 * 109.47079 * 299.99751 * 9 7 2 28 28 H 0.96997 * 119.99567 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.46763 * 60.00720 * 13 11 10 30 30 H 1.08995 * 109.47483 * 300.00377 * 13 11 10 31 31 H 1.00901 * 111.00067 * 303.95401 * 14 13 11 32 32 H 1.09002 * 109.63124 * 264.77724 * 17 15 14 33 33 H 1.09008 * 109.62985 * 25.16739 * 17 15 14 34 34 H 1.08995 * 108.88982 * 200.75455 * 18 17 15 35 35 H 1.08989 * 108.89189 * 319.34685 * 18 17 15 36 36 H 1.08999 * 108.89946 * 58.81533 * 19 18 17 37 37 H 1.09005 * 108.88846 * 177.40515 * 19 18 17 38 38 H 1.09002 * 109.62990 * 199.69330 * 20 19 18 39 39 H 1.08997 * 109.63044 * 320.27247 * 20 19 18 40 40 H 1.08994 * 108.87730 * 26.63429 * 21 20 19 41 41 H 1.09006 * 108.87903 * 145.07619 * 21 20 19 42 42 H 0.96698 * 114.00446 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 7 4.0001 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1132 -1.8993 -0.0025 13 6 5.8275 -4.2420 -0.0013 14 7 7.2966 -4.2419 -0.0020 15 6 7.8231 -5.6133 -0.0019 16 1 7.1466 -6.2504 -0.5718 17 6 7.8824 -6.1120 1.4165 18 6 7.5608 -7.6206 1.4192 19 6 8.7066 -8.4327 1.0376 20 6 9.1881 -8.1329 -0.3967 21 6 10.0240 -6.8821 -0.3688 22 6 9.2033 -5.6174 -0.6865 23 1 9.0609 -5.5523 -1.7651 24 8 9.9368 -4.4707 -0.2514 25 1 -0.4850 0.8399 0.0004 26 1 3.8752 -0.6802 0.8888 27 1 3.8746 -0.6799 -0.8911 28 1 3.3697 -3.3123 -0.0010 29 1 5.4635 -4.7565 -0.8906 30 1 5.4650 -4.7552 0.8894 31 1 7.6578 -3.7163 -0.7838 32 1 8.8819 -5.9499 1.8202 33 1 7.1513 -5.5778 2.0234 34 1 7.2395 -7.9111 2.4194 35 1 6.7473 -7.8092 0.7188 36 1 9.5240 -8.2386 1.7321 37 1 8.4307 -9.4852 1.1031 38 1 9.7879 -8.9660 -0.7633 39 1 8.3271 -7.9835 -1.0482 40 1 10.4667 -6.7758 0.6215 41 1 10.8246 -6.9764 -1.1026 42 1 10.8205 -4.3992 -0.6376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135716279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:43 Heat of formation + Delta-G solvation = -97.690029 kcal Electronic energy + Delta-G solvation = -21082.745523 eV Core-core repulsion = 17869.068296 eV Total energy + Delta-G solvation = -3213.677227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.93448 -38.74201 -36.19819 -35.25439 -34.16309 -32.32235 -31.79594 -30.38890 -28.23181 -26.03750 -24.64806 -23.40399 -21.76038 -20.83094 -19.93315 -19.58372 -17.41688 -17.31025 -16.53900 -15.93161 -15.67306 -15.19776 -15.01705 -14.53241 -14.21440 -13.87475 -13.78330 -13.62325 -13.35326 -13.12342 -12.76900 -12.48825 -12.41835 -12.24843 -11.89563 -11.65829 -11.23095 -11.00085 -10.90344 -10.82248 -10.73048 -10.63758 -10.48668 -9.97311 -9.94214 -9.46906 -9.11166 -8.75232 -8.30233 -8.07342 -6.19487 -4.21506 3.28165 3.32175 3.35631 3.45499 3.68718 4.00826 4.29890 4.33634 4.36530 4.51169 4.67982 4.81616 4.88173 4.98454 5.07503 5.11562 5.15955 5.33314 5.37526 5.45415 5.52061 5.58981 5.60676 5.72342 5.75865 5.78617 5.85413 5.97448 6.06395 6.16660 6.33125 6.82319 7.02172 7.11606 7.28937 7.42617 7.47806 7.57896 8.18002 8.56456 8.78157 9.01333 9.41180 10.92507 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.003344 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.672953 B = 8372.252234 C = 8867.844981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.221 3.779 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.543 6.543 13 C 0.038 3.962 14 N -0.657 5.657 15 C 0.102 3.898 16 H 0.051 0.949 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.104 3.896 23 H 0.047 0.953 24 O -0.546 6.546 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.019 0.981 28 H 0.395 0.605 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.353 0.647 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.881 -18.458 -1.194 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.099 3.901 10 N -0.358 5.358 11 C 0.283 3.717 12 O -0.421 6.421 13 C -0.095 4.095 14 N -0.290 5.290 15 C -0.008 4.008 16 H 0.068 0.932 17 C -0.145 4.145 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.044 3.956 23 H 0.065 0.935 24 O -0.350 6.350 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.037 0.963 28 H 0.228 0.772 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.174 0.826 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 18.758 -17.456 -0.175 25.624 hybrid contribution 0.239 0.075 -1.309 1.333 sum 18.996 -17.380 -1.484 25.790 Atomic orbital electron populations 1.69881 1.06220 1.27416 1.49588 1.24802 0.94792 0.99203 0.93870 0.86807 0.80638 0.83182 0.79026 1.19890 1.20913 1.18425 1.21107 0.88585 0.95197 1.53180 0.90286 1.19466 0.95127 0.78771 0.96728 1.46164 1.05683 1.10942 1.73048 1.20414 0.83089 0.90707 0.77526 1.90664 1.55431 1.46010 1.49963 1.21920 0.89892 0.95440 1.02198 1.60148 1.04745 1.12261 1.51884 1.21428 0.92713 0.89938 0.96731 0.93175 1.21401 1.03220 0.93797 0.96129 1.20541 0.98313 0.95559 1.01705 1.20506 0.98892 0.99677 0.96392 1.21286 0.99859 0.96924 0.97375 1.22088 0.98740 0.94919 1.02995 1.22454 0.91448 0.85279 0.96374 0.93532 1.86737 1.31377 1.44765 1.72155 0.92285 0.95707 0.96281 0.77151 0.93009 0.88516 0.82613 0.91009 0.90663 0.91974 0.92281 0.92081 0.92390 0.91750 0.91597 0.90648 0.92076 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.58 4.50 -5.19 -0.02 5.55 16 10 N -0.71 -14.67 5.55 -61.47 -0.34 -15.01 16 11 C 0.50 9.80 7.87 -10.99 -0.09 9.72 16 12 O -0.54 -12.92 16.20 5.56 0.09 -12.83 16 13 C 0.04 0.54 5.87 -4.98 -0.03 0.52 16 14 N -0.66 -9.39 5.39 -108.74 -0.59 -9.98 16 15 C 0.10 1.09 1.84 -68.42 -0.13 0.97 16 16 H 0.05 0.50 6.22 -51.93 -0.32 0.17 16 17 C -0.11 -1.12 5.20 -27.34 -0.14 -1.26 16 18 C -0.12 -1.00 5.26 -29.60 -0.16 -1.15 16 19 C -0.12 -0.81 5.26 -29.60 -0.16 -0.97 16 20 C -0.12 -0.77 5.61 -27.35 -0.15 -0.92 16 21 C -0.15 -1.05 4.88 -27.44 -0.13 -1.18 16 22 C 0.10 0.96 2.95 -25.62 -0.08 0.88 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 O -0.55 -5.87 12.42 -35.23 -0.44 -6.31 16 25 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.40 7.13 8.32 -40.82 -0.34 6.79 16 29 H 0.05 0.63 8.04 -51.93 -0.42 0.21 16 30 H 0.10 1.24 7.44 -51.93 -0.39 0.85 16 31 H 0.35 5.43 7.66 -39.29 -0.30 5.13 16 32 H 0.07 0.80 6.98 -51.93 -0.36 0.44 16 33 H 0.07 0.91 7.20 -51.92 -0.37 0.53 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.47 7.46 -51.94 -0.39 0.08 16 36 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.45 6.97 -51.93 -0.36 0.09 16 40 H 0.07 0.58 6.63 -51.93 -0.34 0.24 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.37 2.39 9.04 45.56 0.41 2.80 16 LS Contribution 327.33 15.07 4.93 4.93 Total: -1.00 -33.71 327.33 -7.79 -41.49 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.03 Total: 7.77 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.52 Total: -1.19 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.15 Total: -51.02 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.35 Total: -19.14 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.71 -7.79 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135716279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.197 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds