Wall clock time and date at job start Mon Mar 30 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99678 * 2 1 4 4 H 1.48500 * 109.47154 * 270.00471 * 3 2 1 5 5 H 1.48501 * 109.47128 * 30.00272 * 3 2 1 6 6 H 1.48492 * 109.47292 * 150.00363 * 3 2 1 7 7 C 1.37878 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99719 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 11 16 16 H 1.09002 * 108.85292 * 33.56464 * 15 14 13 17 17 C 1.50471 * 108.87791 * 275.00000 * 15 14 13 18 18 C 1.54246 * 108.51345 * 145.06373 * 17 15 14 19 19 C 1.45543 * 112.40198 * 80.00235 * 18 17 15 20 20 C 1.54236 * 112.40361 * 298.05714 * 19 18 17 21 21 C 1.50473 * 108.52581 * 79.98326 * 20 19 18 22 22 C 1.54067 * 108.87631 * 152.02250 * 15 14 13 23 23 H 1.08991 * 108.81416 * 283.35723 * 22 15 14 24 24 O 1.42900 * 108.81209 * 41.63458 * 22 15 14 25 25 H 0.96991 * 120.00374 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46739 * 59.99909 * 9 7 2 27 27 H 1.08995 * 109.47079 * 299.99751 * 9 7 2 28 28 H 0.96997 * 119.99567 * 0.02562 * 10 9 7 29 29 H 1.09004 * 109.46763 * 60.00720 * 13 11 10 30 30 H 1.08995 * 109.47483 * 300.00377 * 13 11 10 31 31 H 1.00901 * 111.00067 * 303.95401 * 14 13 11 32 32 H 1.09002 * 109.63124 * 264.77724 * 17 15 14 33 33 H 1.09008 * 109.62985 * 25.16739 * 17 15 14 34 34 H 1.08995 * 108.88982 * 200.75455 * 18 17 15 35 35 H 1.08989 * 108.89189 * 319.34685 * 18 17 15 36 36 H 1.08999 * 108.89946 * 58.81533 * 19 18 17 37 37 H 1.09005 * 108.88846 * 177.40515 * 19 18 17 38 38 H 1.09002 * 109.62990 * 199.69330 * 20 19 18 39 39 H 1.08997 * 109.63044 * 320.27247 * 20 19 18 40 40 H 1.08994 * 108.87730 * 26.63429 * 21 20 19 41 41 H 1.09006 * 108.87903 * 145.07619 * 21 20 19 42 42 H 0.96698 * 114.00446 * 179.97438 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5117 -1.1939 -0.0011 10 7 4.0001 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1132 -1.8993 -0.0025 13 6 5.8275 -4.2420 -0.0013 14 7 7.2966 -4.2419 -0.0020 15 6 7.8231 -5.6133 -0.0019 16 1 7.1466 -6.2504 -0.5718 17 6 7.8824 -6.1120 1.4165 18 6 7.5608 -7.6206 1.4192 19 6 8.7066 -8.4327 1.0376 20 6 9.1881 -8.1329 -0.3967 21 6 10.0240 -6.8821 -0.3688 22 6 9.2033 -5.6174 -0.6865 23 1 9.0609 -5.5523 -1.7651 24 8 9.9368 -4.4707 -0.2514 25 1 -0.4850 0.8399 0.0004 26 1 3.8752 -0.6802 0.8888 27 1 3.8746 -0.6799 -0.8911 28 1 3.3697 -3.3123 -0.0010 29 1 5.4635 -4.7565 -0.8906 30 1 5.4650 -4.7552 0.8894 31 1 7.6578 -3.7163 -0.7838 32 1 8.8819 -5.9499 1.8202 33 1 7.1513 -5.5778 2.0234 34 1 7.2395 -7.9111 2.4194 35 1 6.7473 -7.8092 0.7188 36 1 9.5240 -8.2386 1.7321 37 1 8.4307 -9.4852 1.1031 38 1 9.7879 -8.9660 -0.7633 39 1 8.3271 -7.9835 -1.0482 40 1 10.4667 -6.7758 0.6215 41 1 10.8246 -6.9764 -1.1026 42 1 10.8205 -4.3992 -0.6376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135716279.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:42 Heat of formation + Delta-G solvation = -125.472751 kcal Electronic energy + Delta-G solvation = -21083.950272 eV Core-core repulsion = 17869.068296 eV Total energy + Delta-G solvation = -3214.881976 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87475 -40.15082 -36.89514 -36.41682 -35.90137 -34.40338 -32.45229 -31.41793 -29.98521 -27.25913 -25.36059 -24.45812 -23.50099 -21.52480 -21.39549 -20.47428 -19.16203 -18.06657 -17.96353 -17.17149 -17.06151 -16.51204 -16.23174 -15.91032 -15.30626 -15.12594 -14.73601 -14.65437 -14.44860 -14.36104 -14.07145 -13.91890 -13.65110 -13.29995 -13.06146 -12.95065 -12.68704 -12.58785 -11.94391 -11.91541 -11.66747 -11.57522 -11.45991 -11.26948 -11.15235 -10.92631 -10.77708 -10.61496 -9.92886 -9.31065 -8.40949 -6.47792 1.31776 1.34228 1.47465 1.74771 2.27273 2.34392 2.94373 3.11618 3.48220 3.65318 3.86762 3.94820 4.05355 4.15814 4.21658 4.33309 4.35467 4.42460 4.46215 4.47746 4.73888 4.76905 4.83001 5.02222 5.02928 5.06407 5.13886 5.20043 5.25575 5.31561 5.35899 5.44244 5.52616 5.54914 5.56162 6.00051 6.12262 6.40821 6.53310 6.87317 6.98794 7.15489 7.43933 8.73795 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.037693 B = 0.003344 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.672953 B = 8372.252234 C = 8867.844981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.233 3.767 10 N -0.707 5.707 11 C 0.497 3.503 12 O -0.586 6.586 13 C 0.052 3.948 14 N -0.676 5.676 15 C 0.100 3.900 16 H 0.066 0.934 17 C -0.104 4.104 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.103 3.897 23 H 0.054 0.946 24 O -0.573 6.573 25 H 0.273 0.727 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.409 0.591 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.345 0.655 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.097 -19.896 -1.726 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.358 5.358 11 C 0.284 3.716 12 O -0.467 6.467 13 C -0.080 4.080 14 N -0.310 5.310 15 C -0.009 4.009 16 H 0.083 0.917 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.179 4.179 22 C 0.044 3.956 23 H 0.072 0.928 24 O -0.380 6.380 25 H 0.082 0.918 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.244 0.756 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.164 0.836 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 19.979 -18.942 -0.709 27.540 hybrid contribution -0.131 0.464 -1.129 1.227 sum 19.848 -18.478 -1.837 27.180 Atomic orbital electron populations 1.69975 1.07631 1.28633 1.50726 1.25592 0.95544 1.02640 0.93585 0.85860 0.79175 0.79402 0.79472 1.18898 1.19700 1.18770 1.21297 0.89901 0.94639 1.52584 0.92123 1.19065 0.93363 0.81226 0.95472 1.46017 1.06767 1.09619 1.73379 1.21346 0.81976 0.92666 0.75604 1.90640 1.56310 1.48016 1.51685 1.21851 0.90247 0.91472 1.04415 1.60152 1.04526 1.14447 1.51834 1.21574 0.93962 0.88163 0.97232 0.91673 1.21349 1.01926 0.95374 0.95608 1.20494 0.99035 0.93835 1.02102 1.20503 0.98293 1.00050 0.96674 1.21304 0.99979 0.97021 0.97039 1.22010 0.98827 0.94084 1.02996 1.22514 0.90806 0.85845 0.96437 0.92826 1.86685 1.32762 1.45703 1.72853 0.91810 0.97311 0.97176 0.75552 0.89973 0.86667 0.83562 0.92157 0.92608 0.91799 0.91710 0.92363 0.91240 0.90362 0.91554 0.91477 0.90453 0.76446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 2 C 0.03 1.53 5.47 84.65 0.46 2.00 16 3 Si 0.94 44.95 27.47 68.60 1.88 46.84 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -12.69 6.54 99.48 0.65 -12.04 16 7 C -0.55 -30.63 9.83 25.60 0.25 -30.38 16 8 H 0.06 3.54 7.84 -2.91 -0.02 3.52 16 9 C 0.23 11.74 4.50 85.63 0.38 12.13 16 10 N -0.71 -28.89 5.55 -466.79 -2.59 -31.48 16 11 C 0.50 19.20 7.87 87.66 0.69 19.89 16 12 O -0.59 -27.96 16.20 -3.03 -0.05 -28.01 16 13 C 0.05 1.39 5.87 85.56 0.50 1.90 16 14 N -0.68 -18.58 5.39 -497.94 -2.68 -21.26 16 15 C 0.10 1.97 1.84 44.46 0.08 2.05 16 16 H 0.07 1.10 6.22 -2.39 -0.01 1.08 16 17 C -0.10 -2.05 5.20 30.20 0.16 -1.89 16 18 C -0.12 -1.65 5.26 28.74 0.15 -1.50 16 19 C -0.12 -1.35 5.26 28.74 0.15 -1.19 16 20 C -0.12 -1.19 5.61 30.20 0.17 -1.02 16 21 C -0.14 -1.67 4.88 30.14 0.15 -1.52 16 22 C 0.10 1.72 2.95 31.32 0.09 1.81 16 23 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 24 O -0.57 -11.82 12.42 -148.98 -1.85 -13.67 16 25 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 26 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 27 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 28 H 0.41 14.38 8.32 -92.71 -0.77 13.61 16 29 H 0.08 1.75 8.04 -2.39 -0.02 1.73 16 30 H 0.12 2.70 7.44 -2.39 -0.02 2.68 16 31 H 0.35 10.38 7.66 -89.69 -0.69 9.69 16 32 H 0.06 1.31 6.98 -2.39 -0.02 1.29 16 33 H 0.06 1.30 7.20 -2.38 -0.02 1.28 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.85 7.46 -2.39 -0.02 0.83 16 36 H 0.06 0.71 7.47 -2.39 -0.02 0.69 16 37 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.70 6.97 -2.39 -0.02 0.68 16 40 H 0.07 0.93 6.63 -2.39 -0.02 0.91 16 41 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.39 4.60 9.04 -74.06 -0.67 3.93 16 Total: -1.00 -72.52 327.33 -2.89 -75.41 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -1.14 Total: 25.69 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 3.24 Total: 2.28 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.97 Total: -108.53 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -1.90 Total: -41.69 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -72.52 -2.89 -75.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135716279.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.063 kcal (2) G-P(sol) polarization free energy of solvation -72.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds