Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99687 * 2 1 4 4 C 1.50696 * 109.47549 * 270.00392 * 3 2 1 5 5 H 1.08007 * 119.99552 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00402 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99805 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00272 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47047 * 119.99433 * 8 6 4 11 11 H 1.48494 * 109.47179 * 239.99872 * 8 6 4 12 12 C 1.34778 * 120.00193 * 180.02562 * 2 1 3 13 13 O 1.21279 * 119.99854 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99596 * 359.97438 * 12 2 1 15 15 N 1.46898 * 109.46961 * 180.02562 * 14 12 2 16 16 C 1.46892 * 111.00196 * 185.33577 * 15 14 12 17 17 C 1.50704 * 112.84794 * 64.83335 * 16 15 14 18 18 O 1.20829 * 119.99517 * 215.68662 * 17 16 15 19 19 O 1.34223 * 120.00443 * 35.95966 * 17 16 15 20 20 C 1.53783 * 113.61519 * 196.02475 * 16 15 14 21 21 C 1.53955 * 87.01796 * 89.23303 * 20 16 15 22 22 C 1.53776 * 113.61779 * 293.63590 * 16 15 14 23 23 H 1.09001 * 109.46791 * 269.99547 * 1 2 3 24 24 H 1.08998 * 109.47220 * 29.99298 * 1 2 3 25 25 H 1.09000 * 109.47446 * 149.99744 * 1 2 3 26 26 H 1.09003 * 109.47343 * 30.00671 * 3 2 1 27 27 H 1.09007 * 109.46558 * 150.00366 * 3 2 1 28 28 H 0.96996 * 119.99765 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47335 * 60.00384 * 14 12 2 30 30 H 1.09003 * 109.47379 * 300.00036 * 14 12 2 31 31 H 1.00901 * 110.99672 * 61.37999 * 15 14 12 32 32 H 0.96694 * 117.00109 * 179.72836 * 19 17 16 33 33 H 1.09007 * 113.61309 * 203.74616 * 20 16 15 34 34 H 1.08990 * 113.61842 * 334.65607 * 20 16 15 35 35 H 1.09001 * 113.53762 * 270.81416 * 21 20 16 36 36 H 1.09002 * 113.74577 * 139.94559 * 21 20 16 37 37 H 1.09009 * 113.61357 * 25.34388 * 22 16 15 38 38 H 1.09005 * 113.61714 * 156.16785 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7040 -1.4207 5 1 2.0980 1.0959 -2.2417 6 6 3.1267 2.8777 -1.6727 7 7 3.5540 3.6178 -0.6730 8 14 3.4373 3.4174 -3.4338 9 1 2.8594 2.4174 -4.3672 10 1 2.8001 4.7385 -3.6664 11 1 4.8997 3.5251 -3.6679 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 7 2.3400 -3.5888 -0.0005 16 6 1.6442 -4.8762 -0.1280 17 6 0.9375 -5.0310 -1.4500 18 8 -0.1181 -5.6164 -1.5058 19 8 1.4832 -4.5234 -2.5664 20 6 2.5139 -6.0866 0.2509 21 6 2.0073 -5.8975 1.6924 22 6 0.7653 -5.2243 1.0848 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8899 -0.5139 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0308 4.4437 -0.8502 29 1 0.7584 -2.5299 -0.8903 30 1 0.7590 -2.5302 0.8897 31 1 2.9179 -3.5704 0.8264 32 1 0.9948 -4.6512 -3.3911 33 1 2.1870 -7.0199 -0.2078 34 1 3.5831 -5.9091 0.1361 35 1 2.6239 -5.2221 2.2854 36 1 1.7890 -6.8332 2.2072 37 1 0.4250 -4.3516 1.6423 38 1 -0.0413 -5.9203 0.8542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147276320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = -93.450670 kcal Electronic energy + Delta-G solvation = -21279.313791 eV Core-core repulsion = 17929.987302 eV Total energy + Delta-G solvation = -3349.326489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13426 -39.09116 -38.44243 -36.13603 -34.83135 -33.57444 -32.53349 -28.50880 -27.22980 -26.07973 -25.99101 -25.05013 -22.51903 -22.14190 -19.17749 -18.54644 -18.18040 -17.21407 -16.66500 -16.48148 -15.76905 -15.49845 -15.22391 -15.16040 -14.53628 -14.34994 -13.67352 -13.27291 -13.22421 -12.72287 -12.41623 -12.36389 -12.19058 -11.83436 -11.71569 -11.66492 -11.54496 -11.20334 -11.11768 -10.91962 -10.83337 -10.58213 -10.44504 -10.14033 -9.59222 -8.99750 -8.49785 -8.42257 -7.63851 -6.02938 -4.07306 2.00973 2.95071 3.31508 3.36327 3.39855 3.45826 3.50876 4.04765 4.15517 4.30903 4.45368 4.48766 4.77022 5.08957 5.21963 5.22783 5.31931 5.34173 5.41146 5.44158 5.60630 5.65422 5.67342 5.68345 5.90041 5.90687 6.18812 6.37919 6.63267 7.06590 7.18085 7.44167 7.54711 7.85846 7.93854 8.24852 8.40853 8.92202 9.10532 9.57920 11.05245 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026498 B = 0.004491 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.427175 B = 6233.701713 C = 6545.394653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.246 3.754 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.282 1.282 12 C 0.507 3.493 13 O -0.524 6.524 14 C 0.040 3.960 15 N -0.631 5.631 16 C 0.097 3.903 17 C 0.502 3.498 18 O -0.522 6.522 19 O -0.492 6.492 20 C -0.119 4.119 21 C -0.140 4.140 22 C -0.158 4.158 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.362 0.638 32 H 0.404 0.596 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 -17.849 3.405 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.337 5.337 3 C 0.127 3.873 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.292 3.708 13 O -0.400 6.400 14 C -0.093 4.093 15 N -0.265 5.265 16 C 0.003 3.997 17 C 0.344 3.656 18 O -0.410 6.410 19 O -0.301 6.301 20 C -0.156 4.156 21 C -0.178 4.178 22 C -0.197 4.197 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.262 0.738 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.435 -17.681 3.122 19.073 hybrid contribution -0.722 0.331 -0.774 1.109 sum -7.157 -17.350 2.348 18.915 Atomic orbital electron populations 1.21635 0.81590 1.02554 1.00340 1.48150 1.06075 1.07768 1.71740 1.19295 0.92522 0.77921 0.97573 1.21477 1.36328 1.06188 0.92333 0.92393 1.24935 0.95346 0.96397 0.97450 1.69944 1.38534 1.14361 1.30665 0.86435 0.78104 0.78233 0.84612 1.19790 1.21016 1.20849 1.19996 0.88165 0.84558 0.78107 1.90682 1.13491 1.86818 1.49003 1.21912 0.94644 0.90647 1.02048 1.59908 1.20962 0.98003 1.47599 1.21994 0.95870 0.93321 0.88550 1.23093 0.82471 0.73976 0.86088 1.90700 1.22652 1.40621 1.87068 1.84739 1.54136 1.72757 1.18432 1.23072 1.00801 0.95592 0.96167 1.22881 0.97010 1.01750 0.96122 1.23668 0.98243 1.02180 0.95616 0.93742 0.90606 0.92791 0.94993 0.93799 0.92797 0.88958 0.92468 0.81628 0.73832 0.88841 0.88959 0.89401 0.90178 0.90378 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.24 59.85 0.61 1.93 16 2 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 3 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 4 C -0.52 -15.02 9.39 -34.44 -0.32 -15.35 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.51 10.49 7.72 -10.98 -0.08 10.40 16 13 O -0.52 -13.12 15.90 5.56 0.09 -13.03 16 14 C 0.04 0.60 4.35 -4.98 -0.02 0.57 16 15 N -0.63 -8.84 5.82 -101.57 -0.59 -9.43 16 16 C 0.10 1.11 1.11 -131.94 -0.15 0.96 16 17 C 0.50 6.43 6.50 36.01 0.23 6.67 16 18 O -0.52 -7.43 16.67 -18.75 -0.31 -7.74 16 19 O -0.49 -6.07 13.27 -39.24 -0.52 -6.59 16 20 C -0.12 -1.07 7.35 -25.83 -0.19 -1.26 16 21 C -0.14 -1.09 7.75 -25.83 -0.20 -1.29 16 22 C -0.16 -1.49 7.03 -25.92 -0.18 -1.67 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.29 7.42 -51.92 -0.39 0.91 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.09 1.37 6.51 -51.93 -0.34 1.03 16 30 H 0.06 0.71 6.80 -51.93 -0.35 0.36 16 31 H 0.36 4.83 7.79 -39.29 -0.31 4.52 16 32 H 0.40 3.12 9.10 45.56 0.41 3.53 16 33 H 0.09 0.77 8.09 -51.92 -0.42 0.35 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.65 7.73 -51.93 -0.40 0.25 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.72 6.79 -51.92 -0.35 0.37 16 38 H 0.10 1.00 7.34 -51.93 -0.38 0.62 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -35.59 321.42 -6.23 -41.83 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.51 Total: 3.37 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -0.43 Total: 9.04 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.38 Total: -48.78 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.74 Total: -27.36 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.59 -6.23 -41.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147276320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.622 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds