Wall clock time and date at job start Mon Mar 30 2020 04:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00146 * 2 1 4 4 C 1.52994 * 109.47591 * 270.00408 * 3 2 1 5 5 O 1.42899 * 110.01654 * 64.29962 * 4 3 2 6 6 C 1.54259 * 110.03425 * 302.90793 * 4 3 2 7 7 C 1.54963 * 104.16293 * 217.13767 * 6 4 3 8 8 C 1.54882 * 102.77863 * 37.88546 * 7 6 4 9 9 C 1.53881 * 110.03424 * 185.68844 * 4 3 2 10 10 C 1.34778 * 119.99616 * 180.02562 * 2 1 3 11 11 O 1.21442 * 119.99975 * 184.02463 * 10 2 1 12 12 C 1.48833 * 120.00088 * 4.02046 * 10 2 1 13 13 O 1.21499 * 120.00179 * 354.15072 * 12 10 2 14 14 N 1.34775 * 119.99683 * 174.42694 * 12 10 2 15 15 C 1.36121 * 119.99795 * 180.02562 * 14 12 10 16 16 H 1.08000 * 120.00100 * 359.97438 * 15 14 12 17 17 C 1.39591 * 120.00054 * 179.97438 * 15 14 12 18 18 N 1.31017 * 119.99702 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47367 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47049 * 120.00499 * 19 17 15 22 22 H 1.48497 * 109.47247 * 240.00098 * 19 17 15 23 23 H 1.09005 * 109.47326 * 263.93290 * 1 2 3 24 24 H 1.09005 * 109.47266 * 23.93272 * 1 2 3 25 25 H 1.08996 * 109.47884 * 143.93206 * 1 2 3 26 26 H 1.09002 * 109.47264 * 30.00992 * 3 2 1 27 27 H 1.09005 * 109.46912 * 150.00355 * 3 2 1 28 28 H 0.96693 * 114.00556 * 300.70207 * 5 4 3 29 29 H 1.09003 * 110.48505 * 335.78440 * 6 4 3 30 30 H 1.09004 * 110.48776 * 98.42679 * 6 4 3 31 31 H 1.09006 * 110.72125 * 279.56998 * 7 6 4 32 32 H 1.09006 * 110.76437 * 156.22651 * 7 6 4 33 33 H 1.09001 * 110.48916 * 203.40631 * 8 7 6 34 34 H 1.09005 * 110.48412 * 80.76216 * 8 7 6 35 35 H 1.08995 * 110.03358 * 238.56965 * 9 4 3 36 36 H 1.09001 * 110.02768 * 0.02562 * 9 4 3 37 37 H 0.96998 * 120.00552 * 359.97438 * 14 12 10 38 38 H 0.96996 * 119.99594 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2117 1.9813 -2.0976 6 6 3.2230 0.6118 -2.2032 7 6 4.1926 1.3964 -3.1229 8 6 4.6242 2.5862 -2.2302 9 6 3.3426 2.9656 -1.4598 10 6 2.1388 -1.1673 -0.0005 11 8 3.3510 -1.1687 0.0733 12 6 1.3973 -2.4545 -0.0915 13 8 0.1828 -2.4597 -0.0581 14 7 2.0733 -3.6149 -0.2052 15 6 1.3952 -4.7922 -0.2890 16 1 0.3155 -4.7965 -0.2638 17 6 2.0953 -5.9941 -0.4073 18 7 3.4051 -5.9889 -0.4374 19 14 1.1646 -7.6096 -0.5215 20 1 -0.2955 -7.3450 -0.4646 21 1 1.4958 -8.2822 -1.8034 22 1 1.5537 -8.4862 0.6122 23 1 -0.3634 -0.1086 1.0219 24 1 -0.3634 0.9393 -0.4169 25 1 -0.3635 -0.8306 -0.6050 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1382 0.5138 28 1 0.6102 1.2249 -2.1290 29 1 3.7809 -0.0146 -1.5071 30 1 2.5379 0.0070 -2.7973 31 1 3.6761 1.7504 -4.0152 32 1 5.0526 0.7826 -3.3911 33 1 4.9614 3.4212 -2.8443 34 1 5.4084 2.2790 -1.5382 35 1 2.8286 3.7809 -1.9687 36 1 3.5933 3.2596 -0.4405 37 1 3.0430 -3.6112 -0.2282 38 1 3.8915 -6.8241 -0.5193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161597217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:00 Heat of formation + Delta-G solvation = -118.948874 kcal Electronic energy + Delta-G solvation = -21808.617456 eV Core-core repulsion = 18458.185282 eV Total energy + Delta-G solvation = -3350.432174 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29662 -38.71027 -37.10520 -35.46028 -34.65258 -33.91849 -31.47000 -29.70183 -28.65904 -26.47970 -25.89799 -24.82987 -22.05932 -20.80476 -19.77441 -19.05600 -18.16977 -16.67612 -16.59344 -16.22382 -15.79793 -15.35121 -14.93690 -14.69765 -14.12372 -13.94091 -13.48493 -13.12883 -12.97864 -12.85147 -12.48535 -12.37882 -12.04902 -11.80691 -11.58211 -11.27249 -11.24480 -11.11555 -10.96353 -10.79888 -10.59811 -10.50241 -10.43981 -10.10379 -9.87765 -9.75788 -8.36139 -8.26453 -7.98408 -6.72598 -4.04779 2.35594 3.09704 3.11206 3.17148 3.26442 3.99913 4.16381 4.21826 4.62743 4.70096 4.80267 4.91082 5.12353 5.18008 5.32818 5.47365 5.57170 5.57433 5.68375 5.79766 5.80322 5.90833 5.92420 5.99600 6.07463 6.13031 6.22176 6.34460 6.48959 6.53822 6.86323 7.26088 7.55722 7.71220 7.75686 8.25717 8.52789 8.90359 9.25931 9.79049 10.42075 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004902 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.358568 B = 5710.709781 C = 6216.143920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.090 3.910 4 C 0.116 3.884 5 O -0.561 6.561 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.108 4.108 10 C 0.513 3.487 11 O -0.542 6.542 12 C 0.392 3.608 13 O -0.590 6.590 14 N -0.496 5.496 15 C -0.305 4.305 16 H 0.114 0.886 17 C 0.032 3.968 18 N -0.867 5.867 19 Si 0.938 3.062 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.375 0.625 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.404 0.596 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 13.004 -2.130 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.336 5.336 3 C -0.033 4.033 4 C 0.074 3.926 5 O -0.368 6.368 6 C -0.199 4.199 7 C -0.158 4.158 8 C -0.160 4.160 9 C -0.146 4.146 10 C 0.300 3.700 11 O -0.420 6.420 12 C 0.177 3.823 13 O -0.479 6.479 14 N -0.130 5.130 15 C -0.436 4.436 16 H 0.131 0.869 17 C -0.176 4.176 18 N -0.505 5.505 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.137 0.863 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.224 0.776 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.240 0.760 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.320 13.436 -2.131 13.607 hybrid contribution -0.096 -1.273 0.092 1.280 sum 0.224 12.163 -2.040 12.335 Atomic orbital electron populations 1.22487 0.78025 1.03512 1.03693 1.47619 1.07914 1.04697 1.73347 1.22269 0.98804 0.85423 0.96829 1.22341 0.84439 0.94905 0.90923 1.86471 1.28480 1.41620 1.80271 1.23378 0.99175 0.97860 0.99530 1.22437 0.98897 0.96533 0.97894 1.22343 0.97010 0.98173 0.98447 1.22071 0.94936 0.96590 1.01017 1.20713 0.87326 0.85738 0.76204 1.90622 1.14217 1.87549 1.49593 1.18902 0.87839 0.84300 0.91296 1.90454 1.12916 1.85530 1.59042 1.41588 1.10488 1.04600 1.56324 1.19937 0.94062 0.82259 1.47353 0.86853 1.25598 0.95610 1.00515 0.95827 1.69490 1.06509 1.29585 1.44917 0.85670 0.79882 0.79979 0.78117 1.18677 1.20264 1.20258 0.92922 0.92670 0.86342 0.90131 0.89021 0.77596 0.87913 0.91754 0.91778 0.91592 0.91651 0.91337 0.90479 0.90903 0.76041 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.99 8.64 59.85 0.52 1.51 16 2 N -0.60 -10.14 2.57 -182.32 -0.47 -10.61 16 3 C 0.09 1.28 4.48 -4.05 -0.02 1.26 16 4 C 0.12 1.58 1.12 -89.50 -0.10 1.48 16 5 O -0.56 -7.78 12.62 -35.23 -0.44 -8.23 16 6 C -0.16 -2.48 5.07 -25.04 -0.13 -2.61 16 7 C -0.12 -1.55 6.91 -24.70 -0.17 -1.72 16 8 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 9 C -0.11 -1.25 6.27 -25.61 -0.16 -1.41 16 10 C 0.51 10.72 6.75 -11.87 -0.08 10.64 16 11 O -0.54 -11.99 13.61 5.42 0.07 -11.91 16 12 C 0.39 9.44 7.71 -11.88 -0.09 9.35 16 13 O -0.59 -14.71 12.68 5.37 0.07 -14.64 16 14 N -0.50 -12.85 5.24 -11.59 -0.06 -12.91 16 15 C -0.31 -8.16 9.67 -15.14 -0.15 -8.31 16 16 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 17 C 0.03 0.80 5.51 -17.39 -0.10 0.71 16 18 N -0.87 -22.78 13.03 55.53 0.72 -22.05 16 19 Si 0.94 19.64 29.56 -169.99 -5.02 14.61 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.67 6.77 -51.93 -0.35 0.31 16 25 H 0.12 2.11 5.32 -51.96 -0.28 1.83 16 26 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 27 H 0.09 1.37 7.37 -51.93 -0.38 0.99 16 28 H 0.38 4.84 6.85 45.56 0.31 5.15 16 29 H 0.10 1.84 5.01 -51.93 -0.26 1.58 16 30 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 36 H 0.07 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.40 10.60 7.36 -40.82 -0.30 10.30 16 38 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 306.20 15.07 4.61 4.61 Total: -1.00 -28.65 306.20 -5.69 -34.34 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -4.53 Total: 17.41 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.65 Total: 9.37 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.19 Total: -45.57 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.30 Total: -34.79 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.65 -5.69 -34.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161597217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.609 kcal (2) G-P(sol) polarization free energy of solvation -28.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds