Wall clock time and date at job start Mon Mar 30 2020 04:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46493 * 120.00146 * 2 1 4 4 C 1.52994 * 109.47591 * 270.00408 * 3 2 1 5 5 O 1.42899 * 110.01654 * 64.29962 * 4 3 2 6 6 C 1.54259 * 110.03425 * 302.90793 * 4 3 2 7 7 C 1.54963 * 104.16293 * 217.13767 * 6 4 3 8 8 C 1.54882 * 102.77863 * 37.88546 * 7 6 4 9 9 C 1.53881 * 110.03424 * 185.68844 * 4 3 2 10 10 C 1.34778 * 119.99616 * 180.02562 * 2 1 3 11 11 O 1.21442 * 119.99975 * 184.02463 * 10 2 1 12 12 C 1.48833 * 120.00088 * 4.02046 * 10 2 1 13 13 O 1.21499 * 120.00179 * 354.15072 * 12 10 2 14 14 N 1.34775 * 119.99683 * 174.42694 * 12 10 2 15 15 C 1.36121 * 119.99795 * 180.02562 * 14 12 10 16 16 H 1.08000 * 120.00100 * 359.97438 * 15 14 12 17 17 C 1.39591 * 120.00054 * 179.97438 * 15 14 12 18 18 N 1.31017 * 119.99702 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99867 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47367 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47049 * 120.00499 * 19 17 15 22 22 H 1.48497 * 109.47247 * 240.00098 * 19 17 15 23 23 H 1.09005 * 109.47326 * 263.93290 * 1 2 3 24 24 H 1.09005 * 109.47266 * 23.93272 * 1 2 3 25 25 H 1.08996 * 109.47884 * 143.93206 * 1 2 3 26 26 H 1.09002 * 109.47264 * 30.00992 * 3 2 1 27 27 H 1.09005 * 109.46912 * 150.00355 * 3 2 1 28 28 H 0.96693 * 114.00556 * 300.70207 * 5 4 3 29 29 H 1.09003 * 110.48505 * 335.78440 * 6 4 3 30 30 H 1.09004 * 110.48776 * 98.42679 * 6 4 3 31 31 H 1.09006 * 110.72125 * 279.56998 * 7 6 4 32 32 H 1.09006 * 110.76437 * 156.22651 * 7 6 4 33 33 H 1.09001 * 110.48916 * 203.40631 * 8 7 6 34 34 H 1.09005 * 110.48412 * 80.76216 * 8 7 6 35 35 H 1.08995 * 110.03358 * 238.56965 * 9 4 3 36 36 H 1.09001 * 110.02768 * 0.02562 * 9 4 3 37 37 H 0.96998 * 120.00552 * 359.97438 * 14 12 10 38 38 H 0.96996 * 119.99594 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4424 5 8 1.2117 1.9813 -2.0976 6 6 3.2230 0.6118 -2.2032 7 6 4.1926 1.3964 -3.1229 8 6 4.6242 2.5862 -2.2302 9 6 3.3426 2.9656 -1.4598 10 6 2.1388 -1.1673 -0.0005 11 8 3.3510 -1.1687 0.0733 12 6 1.3973 -2.4545 -0.0915 13 8 0.1828 -2.4597 -0.0581 14 7 2.0733 -3.6149 -0.2052 15 6 1.3952 -4.7922 -0.2890 16 1 0.3155 -4.7965 -0.2638 17 6 2.0953 -5.9941 -0.4073 18 7 3.4051 -5.9889 -0.4374 19 14 1.1646 -7.6096 -0.5215 20 1 -0.2955 -7.3450 -0.4646 21 1 1.4958 -8.2822 -1.8034 22 1 1.5537 -8.4862 0.6122 23 1 -0.3634 -0.1086 1.0219 24 1 -0.3634 0.9393 -0.4169 25 1 -0.3635 -0.8306 -0.6050 26 1 1.6085 2.0283 0.5140 27 1 3.1500 1.1382 0.5138 28 1 0.6102 1.2249 -2.1290 29 1 3.7809 -0.0146 -1.5071 30 1 2.5379 0.0070 -2.7973 31 1 3.6761 1.7504 -4.0152 32 1 5.0526 0.7826 -3.3911 33 1 4.9614 3.4212 -2.8443 34 1 5.4084 2.2790 -1.5382 35 1 2.8286 3.7809 -1.9687 36 1 3.5933 3.2596 -0.4405 37 1 3.0430 -3.6112 -0.2282 38 1 3.8915 -6.8241 -0.5193 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161597217.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:59 Heat of formation + Delta-G solvation = -139.998710 kcal Electronic energy + Delta-G solvation = -21809.530246 eV Core-core repulsion = 18458.185282 eV Total energy + Delta-G solvation = -3351.344963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80147 -40.15630 -38.83255 -36.99138 -36.00803 -35.50840 -33.43916 -30.87633 -29.70672 -28.18173 -27.32832 -26.31326 -23.68946 -21.85906 -20.96023 -20.69748 -20.03706 -18.34319 -18.02680 -17.57268 -17.07671 -16.94560 -16.40928 -16.13161 -15.79054 -15.58657 -14.85764 -14.72730 -14.22525 -14.08758 -13.90918 -13.72718 -13.62226 -13.24437 -12.98044 -12.78981 -12.54536 -12.42298 -12.13911 -12.08245 -12.05576 -11.97641 -11.77801 -11.62442 -11.43465 -11.02439 -10.26644 -9.93526 -9.59721 -8.65513 -6.09719 0.59650 1.40943 1.45092 1.56004 1.71932 2.27015 2.34868 3.06656 3.14930 3.20191 3.59241 3.65842 3.80889 3.94808 4.17516 4.24413 4.36367 4.46413 4.51922 4.65121 4.76044 4.77288 4.81235 4.93081 5.00052 5.11464 5.15256 5.20383 5.25956 5.28029 5.41411 5.53390 5.69844 6.05521 6.33461 6.65220 6.77864 6.98075 7.29624 7.81417 8.50540 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.028968 B = 0.004902 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.358568 B = 5710.709781 C = 6216.143920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.587 5.587 3 C 0.088 3.912 4 C 0.119 3.881 5 O -0.562 6.562 6 C -0.167 4.167 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.105 4.105 10 C 0.515 3.485 11 O -0.557 6.557 12 C 0.390 3.610 13 O -0.600 6.600 14 N -0.513 5.513 15 C -0.342 4.342 16 H 0.100 0.900 17 C -0.005 4.005 18 N -0.898 5.898 19 Si 1.008 2.992 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.268 1.268 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.113 0.887 27 H 0.086 0.914 28 H 0.378 0.622 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 14.658 -2.128 14.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.319 5.319 3 C -0.034 4.034 4 C 0.077 3.923 5 O -0.369 6.369 6 C -0.205 4.205 7 C -0.158 4.158 8 C -0.156 4.156 9 C -0.143 4.143 10 C 0.300 3.700 11 O -0.437 6.437 12 C 0.176 3.824 13 O -0.490 6.490 14 N -0.147 5.147 15 C -0.472 4.472 16 H 0.118 0.882 17 C -0.209 4.209 18 N -0.536 5.536 19 Si 0.829 3.171 20 H -0.186 1.186 21 H -0.192 1.192 22 H -0.193 1.193 23 H 0.073 0.927 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.104 0.896 28 H 0.227 0.773 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.091 15.129 -2.131 15.278 hybrid contribution -0.017 -1.647 0.076 1.649 sum -0.108 13.482 -2.055 13.638 Atomic orbital electron populations 1.22467 0.76816 1.04650 1.03565 1.47649 1.08694 1.04462 1.71123 1.22546 0.98836 0.84280 0.97739 1.22369 0.84566 0.95435 0.89935 1.86480 1.28459 1.41730 1.80272 1.23337 0.99383 0.98245 0.99507 1.22449 0.98278 0.97066 0.97969 1.22353 0.96963 0.97919 0.98325 1.22113 0.94389 0.95361 1.02405 1.20130 0.86955 0.85861 0.77035 1.90623 1.14611 1.87763 1.50687 1.19607 0.88007 0.85252 0.89583 1.90456 1.13521 1.86272 1.58725 1.41677 1.10148 1.05178 1.57697 1.19998 0.93712 0.83444 1.50008 0.88197 1.26507 0.96423 1.03414 0.94567 1.69558 1.07799 1.30872 1.45378 0.84662 0.78367 0.75453 0.78590 1.18645 1.19226 1.19256 0.92718 0.88565 0.88953 0.86938 0.89563 0.77310 0.90636 0.93867 0.91320 0.91813 0.89469 0.91220 0.89702 0.89005 0.76695 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 8.64 127.77 1.10 3.03 16 2 N -0.59 -19.14 2.57 -849.06 -2.18 -21.32 16 3 C 0.09 2.29 4.48 86.38 0.39 2.68 16 4 C 0.12 2.99 1.12 -10.07 -0.01 2.98 16 5 O -0.56 -14.15 12.62 -148.98 -1.88 -16.03 16 6 C -0.17 -5.08 5.07 31.69 0.16 -4.92 16 7 C -0.12 -2.96 6.91 31.91 0.22 -2.74 16 8 C -0.12 -2.32 6.83 31.67 0.22 -2.11 16 9 C -0.10 -2.07 6.27 31.32 0.20 -1.88 16 10 C 0.51 21.79 6.75 87.08 0.59 22.37 16 11 O -0.56 -25.16 13.61 -3.53 -0.05 -25.21 16 12 C 0.39 19.37 7.71 87.08 0.67 20.05 16 13 O -0.60 -30.63 12.68 -3.71 -0.05 -30.68 16 14 N -0.51 -27.66 5.24 -308.87 -1.62 -29.28 16 15 C -0.34 -18.90 9.67 84.35 0.82 -18.09 16 16 H 0.10 5.66 7.15 -2.91 -0.02 5.64 16 17 C -0.01 -0.26 5.51 85.14 0.47 0.20 16 18 N -0.90 -48.08 13.03 21.77 0.28 -47.80 16 19 Si 1.01 40.44 29.56 68.60 2.03 42.47 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.10 2.02 6.77 -2.38 -0.02 2.00 16 25 H 0.09 3.26 5.32 -2.79 -0.01 3.24 16 26 H 0.11 2.29 8.07 -2.39 -0.02 2.27 16 27 H 0.09 2.42 7.37 -2.38 -0.02 2.40 16 28 H 0.38 8.98 6.85 -74.06 -0.51 8.47 16 29 H 0.08 2.75 5.01 -2.39 -0.01 2.74 16 30 H 0.04 1.45 8.05 -2.38 -0.02 1.43 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.60 7.95 -2.39 -0.02 1.58 16 36 H 0.09 1.49 7.67 -2.39 -0.02 1.47 16 37 H 0.40 21.93 7.36 -92.71 -0.68 21.25 16 38 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 Total: -1.00 -63.10 306.20 1.26 -61.84 By element: Atomic # 1 Polarization: 44.52 SS G_CDS: -0.09 Total: 44.42 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 4.82 Total: 21.58 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.52 Total: -98.40 kcal Atomic # 8 Polarization: -69.94 SS G_CDS: -1.97 Total: -71.92 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -63.10 1.26 -61.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161597217.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.160 kcal (2) G-P(sol) polarization free energy of solvation -63.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds