Wall clock time and date at job start Mon Mar 30 2020 04:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46952 * 2 1 4 4 C 1.50696 * 109.47424 * 239.99681 * 2 1 3 5 5 O 1.20829 * 119.99767 * 240.00089 * 4 2 1 6 6 O 1.34225 * 120.00284 * 60.00212 * 4 2 1 7 7 C 1.53006 * 109.47073 * 119.99461 * 2 1 3 8 8 C 1.53936 * 113.73386 * 278.77439 * 7 2 1 9 9 N 1.48194 * 86.09554 * 221.95588 * 8 7 2 10 10 C 1.46905 * 111.06987 * 137.52179 * 9 8 7 11 11 C 1.50698 * 109.47334 * 90.56137 * 10 9 8 12 12 O 1.21279 * 120.00007 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00234 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00168 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47018 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99744 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00490 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99695 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46889 * 90.00378 * 19 17 15 21 21 H 1.48503 * 109.46994 * 210.00028 * 19 17 15 22 22 H 1.48496 * 109.47123 * 330.00176 * 19 17 15 23 23 C 1.47957 * 90.80298 * 24.59899 * 9 8 7 24 24 H 1.09000 * 109.47942 * 300.00464 * 1 2 3 25 25 H 1.09002 * 109.46948 * 60.00520 * 1 2 3 26 26 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 27 27 H 0.96697 * 117.00352 * 180.02562 * 6 4 2 28 28 H 1.08998 * 112.93494 * 50.33129 * 7 2 1 29 29 H 1.09004 * 113.75788 * 336.22669 * 8 7 2 30 30 H 1.08998 * 113.76252 * 107.59910 * 8 7 2 31 31 H 1.09001 * 109.46857 * 210.56058 * 10 9 8 32 32 H 1.09001 * 109.46846 * 330.55792 * 10 9 8 33 33 H 0.97003 * 119.99411 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.46872 * 299.99700 * 14 13 11 35 35 H 1.08993 * 109.47443 * 59.99854 * 14 13 11 36 36 H 0.96999 * 120.00610 * 179.97438 * 18 17 15 37 37 H 1.08998 * 113.75521 * 221.09118 * 23 9 8 38 38 H 1.09000 * 113.85952 * 89.73032 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1194 6 8 1.7082 -0.2520 -2.4495 7 6 2.0399 -0.7212 1.2494 8 6 2.0438 0.1572 2.5136 9 7 3.3637 -0.4490 2.8078 10 6 4.3149 0.5632 3.2861 11 6 4.2390 0.6538 4.7884 12 8 3.4680 -0.0547 5.4004 13 7 5.0277 1.5222 5.4519 14 6 4.9543 1.6098 6.9124 15 6 5.9300 2.6483 7.4030 16 1 6.5437 3.1886 6.6975 17 6 6.0391 2.9085 8.7526 18 7 5.2915 2.2509 9.6118 19 14 7.2491 4.1953 9.3608 20 1 6.5790 5.5196 9.4125 21 1 7.7225 3.8267 10.7192 22 1 8.4076 4.2626 8.4342 23 6 3.5743 -0.7380 1.3721 24 1 -0.3635 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 2.0536 -0.7412 -3.2087 28 1 1.5774 -1.6973 1.3949 29 1 2.0882 1.2262 2.3054 30 1 1.2684 -0.1054 3.2332 31 1 5.3252 0.2812 2.9897 32 1 4.0653 1.5308 2.8506 33 1 5.6441 2.0891 4.9624 34 1 3.9441 1.8920 7.2091 35 1 5.2038 0.6421 7.3475 36 1 5.3685 2.4338 10.5613 37 1 4.0193 -1.7146 1.1814 38 1 4.0672 0.0676 0.8278 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165803452.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:13 Heat of formation + Delta-G solvation = -130.236085 kcal Electronic energy + Delta-G solvation = -20304.874449 eV Core-core repulsion = 16953.952825 eV Total energy + Delta-G solvation = -3350.921624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.87352 -40.79140 -39.73505 -37.02553 -36.09623 -34.92182 -34.32274 -31.34717 -29.16167 -27.25458 -26.44552 -25.34150 -24.16856 -21.95693 -21.23936 -20.56558 -18.95695 -18.91735 -17.85991 -17.43717 -17.23914 -16.84532 -16.58892 -16.36704 -16.04563 -15.56491 -15.07191 -14.60897 -14.24598 -14.12752 -13.96698 -13.79781 -13.56998 -13.32547 -12.92318 -12.91535 -12.72141 -12.50619 -12.40299 -12.22547 -11.97080 -11.94581 -11.58203 -11.47628 -11.26020 -10.79991 -10.70334 -9.80959 -9.68558 -8.28925 -6.45932 1.26791 1.43051 1.45808 1.57058 1.82619 2.11670 2.28569 2.47757 3.05731 3.06350 3.44611 3.56906 3.89603 3.99424 4.14764 4.21690 4.32281 4.36073 4.38067 4.45630 4.58360 4.78740 4.87137 4.91586 4.99506 5.12129 5.22610 5.24370 5.32899 5.39722 5.49896 5.67913 5.70863 5.85521 6.00835 6.65715 6.97359 7.05564 7.24021 7.56221 8.83435 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047049 B = 0.002889 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.978407 B = 9689.043463 C = 9805.452334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.071 4.071 3 H 0.131 0.869 4 C 0.486 3.514 5 O -0.544 6.544 6 O -0.512 6.512 7 C -0.088 4.088 8 C 0.015 3.985 9 N -0.497 5.497 10 C 0.015 3.985 11 C 0.494 3.506 12 O -0.589 6.589 13 N -0.711 5.711 14 C 0.268 3.732 15 C -0.555 4.555 16 H 0.085 0.915 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.255 1.255 23 C 0.020 3.980 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.426 0.574 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.408 0.592 34 H -0.014 1.014 35 H -0.017 1.017 36 H 0.269 0.731 37 H 0.081 0.919 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 0.254 -26.078 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 H 0.149 0.851 4 C 0.330 3.670 5 O -0.434 6.434 6 O -0.326 6.326 7 C -0.107 4.107 8 C -0.113 4.113 9 N -0.220 5.220 10 C -0.116 4.116 11 C 0.281 3.719 12 O -0.469 6.469 13 N -0.362 5.362 14 C 0.145 3.855 15 C -0.593 4.593 16 H 0.103 0.897 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.195 1.195 21 H -0.211 1.211 22 H -0.179 1.179 23 C -0.108 4.108 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.287 0.713 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.244 0.756 34 H 0.004 0.996 35 H 0.000 1.000 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.793 -0.838 -24.601 25.535 hybrid contribution 0.958 0.670 -0.171 1.181 sum -5.836 -0.168 -24.772 25.451 Atomic orbital electron populations 1.21754 0.90437 1.03157 1.04502 1.21129 0.99432 1.00998 0.87443 0.85114 1.23653 0.76057 0.81886 0.85427 1.90743 1.37286 1.27586 1.87735 1.84493 1.72041 1.59066 1.16956 1.22749 0.95851 0.99696 0.92439 1.24149 0.92806 0.98482 0.95871 1.68379 1.02819 1.33034 1.17768 1.22579 1.00838 0.97995 0.90237 1.21400 0.79893 0.79206 0.91407 1.90631 1.40487 1.44687 1.71079 1.46201 1.41235 1.40250 1.08537 1.18491 0.95365 0.95130 0.76512 1.21631 1.22603 1.21708 0.93380 0.89703 1.26102 0.98045 0.98824 0.96783 1.70146 1.41076 1.42793 1.03093 0.85138 0.78482 0.77928 0.77546 1.19460 1.21051 1.17855 1.23957 0.96704 1.02683 0.87410 0.89975 0.90012 0.92461 0.71257 0.88809 0.88721 0.90605 0.86266 0.87841 0.75644 0.99608 0.99950 0.92257 0.90025 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.11 71.98 0.66 -0.76 16 2 C -0.07 -0.88 2.56 -11.54 -0.03 -0.91 16 3 H 0.13 1.11 7.98 -2.38 -0.02 1.09 16 4 C 0.49 7.25 7.44 71.23 0.53 7.78 16 5 O -0.54 -11.97 15.79 21.95 0.35 -11.63 16 6 O -0.51 -4.91 13.33 -51.36 -0.68 -5.60 16 7 C -0.09 -1.64 2.85 -10.15 -0.03 -1.67 16 8 C 0.02 0.34 7.52 86.37 0.65 0.99 16 9 N -0.50 -13.98 5.65 -911.76 -5.15 -19.13 16 10 C 0.01 0.40 5.28 85.56 0.45 0.85 16 11 C 0.49 20.33 7.87 87.66 0.69 21.02 16 12 O -0.59 -30.64 16.43 -3.03 -0.05 -30.69 16 13 N -0.71 -30.43 5.55 -466.80 -2.59 -33.02 16 14 C 0.27 15.02 5.43 85.63 0.46 15.49 16 15 C -0.56 -30.48 9.28 25.60 0.24 -30.24 16 16 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 17 C 0.00 0.10 5.46 84.65 0.46 0.57 16 18 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 19 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 23 C 0.02 0.43 6.16 86.41 0.53 0.97 16 24 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 25 H 0.08 0.64 8.11 -2.39 -0.02 0.62 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.43 0.91 9.10 -74.06 -0.67 0.24 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 1.63 7.33 -2.38 -0.02 1.62 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.12 2.72 8.08 -2.39 -0.02 2.71 16 32 H 0.10 2.06 7.39 -2.39 -0.02 2.05 16 33 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 34 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.08 1.98 8.09 -2.39 -0.02 1.96 16 38 H 0.09 1.44 7.88 -2.39 -0.02 1.42 16 Total: -1.00 -81.05 326.90 -1.57 -82.61 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -0.37 Total: 15.62 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 4.62 Total: 14.08 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -7.45 Total: -108.87 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.39 Total: -47.92 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -81.05 -1.57 -82.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165803452.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.623 kcal (2) G-P(sol) polarization free energy of solvation -81.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds