Wall clock time and date at job start Mon Mar 30 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46921 * 2 1 4 4 H 1.09001 * 109.47375 * 55.00127 * 3 2 1 5 5 C 1.50703 * 109.47084 * 175.00085 * 3 2 1 6 6 H 1.08005 * 119.99876 * 119.99791 * 5 3 2 7 7 C 1.37874 * 119.99789 * 299.99650 * 5 3 2 8 8 N 1.31514 * 120.00287 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47151 * 90.00298 * 9 7 5 11 11 H 1.48507 * 109.47197 * 210.00055 * 9 7 5 12 12 H 1.48498 * 109.47171 * 330.00226 * 9 7 5 13 13 O 1.45206 * 109.46989 * 295.00011 * 3 2 1 14 14 C 1.34222 * 117.00150 * 90.00001 * 13 3 2 15 15 O 1.20828 * 119.99743 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00425 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47192 * 59.99797 * 16 14 13 18 18 C 1.53005 * 109.46739 * 300.00279 * 16 14 13 19 19 C 1.52991 * 109.47456 * 180.02562 * 16 14 13 20 20 C 1.53182 * 109.54254 * 299.81917 * 19 16 14 21 21 C 1.53112 * 109.15661 * 183.24187 * 20 19 16 22 22 O 1.42900 * 109.48724 * 57.47740 * 21 20 19 23 23 C 1.42907 * 114.09558 * 298.88935 * 22 21 20 24 24 C 1.53089 * 109.41839 * 61.15984 * 23 22 21 25 25 H 1.09004 * 109.46964 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47141 * 299.99499 * 1 2 3 27 27 H 1.09000 * 109.47312 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.47011 * 239.99593 * 2 1 3 29 29 H 1.09000 * 109.46863 * 119.99909 * 2 1 3 30 30 H 0.96996 * 120.00180 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46785 * 179.97438 * 18 16 14 32 32 H 1.08997 * 109.47154 * 299.99273 * 18 16 14 33 33 H 1.08998 * 109.47639 * 60.00073 * 18 16 14 34 34 H 1.08995 * 109.54739 * 59.99549 * 19 16 14 35 35 H 1.08997 * 109.52686 * 303.06133 * 20 19 16 36 36 H 1.09002 * 109.51882 * 63.25204 * 20 19 16 37 37 H 1.08995 * 109.40431 * 297.49314 * 21 20 19 38 38 H 1.09001 * 109.47713 * 177.50864 * 21 20 19 39 39 H 1.09000 * 109.48090 * 301.17114 * 23 22 21 40 40 H 1.09001 * 109.47462 * 181.13864 * 23 22 21 41 41 H 1.08995 * 109.52233 * 182.48546 * 24 23 22 42 42 H 1.09001 * 109.57192 * 62.32396 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8802 1.3811 10 1 6.4428 2.1131 2.0836 11 1 6.4391 -0.3109 2.1546 12 1 6.6131 0.8396 0.0269 13 8 1.6558 2.0916 -1.2408 14 6 0.4727 2.7253 -1.2560 15 8 -0.2189 2.7376 -0.2653 16 6 0.0073 3.4224 -2.5084 17 1 -0.0713 2.6984 -3.3194 18 6 1.0139 4.5094 -2.8910 19 6 -1.3609 4.0600 -2.2589 20 6 -2.3713 2.9729 -1.8798 21 6 -3.7539 3.6087 -1.7113 22 8 -4.1233 4.2738 -2.9209 23 6 -3.2401 5.3322 -3.2980 24 6 -1.8375 4.7654 -3.5324 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0610 2.9498 31 1 0.6775 5.0134 -3.7971 32 1 1.0924 5.2335 -2.0800 33 1 1.9888 4.0556 -3.0687 34 1 -1.2833 4.7843 -1.4482 35 1 -2.4110 2.2214 -2.6683 36 1 -2.0679 2.5042 -0.9436 37 1 -3.7238 4.3298 -0.8946 38 1 -4.4855 2.8331 -1.4848 39 1 -3.2033 6.0759 -2.5020 40 1 -3.6018 5.7981 -4.2146 41 1 -1.1527 5.5773 -3.7771 42 1 -1.8650 4.0515 -4.3557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188095513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:32 Heat of formation + Delta-G solvation = -178.039565 kcal Electronic energy + Delta-G solvation = -22150.011047 eV Core-core repulsion = 18900.556852 eV Total energy + Delta-G solvation = -3249.454195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72059 -40.15238 -37.84268 -36.23714 -35.49546 -33.39614 -32.19408 -31.80226 -29.31882 -26.64690 -25.59212 -24.63794 -24.02656 -22.17328 -21.26267 -20.72695 -18.86382 -18.37246 -17.40040 -17.10474 -17.00953 -16.81285 -16.43801 -15.72317 -15.23088 -14.87756 -14.83210 -14.67482 -14.28469 -13.89453 -13.64324 -13.38545 -13.15359 -13.15164 -13.01887 -12.77403 -12.67938 -12.55679 -12.42366 -12.22270 -12.11968 -11.83368 -11.75655 -11.66437 -11.38691 -11.15254 -10.83097 -10.79729 -10.52293 -10.40441 -8.27910 -6.44630 1.40384 1.41973 1.44393 1.53914 2.07945 2.42600 2.99994 3.01740 3.52996 3.75056 3.79193 4.10506 4.11672 4.23772 4.28086 4.35862 4.39007 4.41042 4.41957 4.55181 4.63808 4.73911 4.78462 4.84333 4.87673 4.92261 4.95676 5.02196 5.08757 5.11594 5.21103 5.23876 5.32836 5.41545 5.43540 5.53680 5.67680 6.00492 6.18781 6.29301 6.61200 7.06525 7.28594 8.78699 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.034030 B = 0.004585 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.599510 B = 6105.772859 C = 6654.552662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.979 3.021 10 H -0.272 1.272 11 H -0.276 1.276 12 H -0.263 1.263 13 O -0.365 6.365 14 C 0.446 3.554 15 O -0.536 6.536 16 C -0.073 4.073 17 H 0.117 0.883 18 C -0.141 4.141 19 C -0.067 4.067 20 C -0.163 4.163 21 C 0.067 3.933 22 O -0.401 6.401 23 C 0.055 3.945 24 C -0.143 4.143 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.270 0.730 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.674 8.121 -11.777 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.082 0.918 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.187 1.187 13 O -0.282 6.282 14 C 0.291 3.709 15 O -0.427 6.427 16 C -0.092 4.092 17 H 0.135 0.865 18 C -0.198 4.198 19 C -0.086 4.086 20 C -0.200 4.200 21 C -0.009 4.009 22 O -0.320 6.320 23 C -0.021 4.021 24 C -0.181 4.181 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.992 7.951 -11.395 17.115 hybrid contribution 1.132 -0.321 1.063 1.586 sum -8.860 7.630 -10.331 15.603 Atomic orbital electron populations 1.21700 0.96164 1.00482 1.00154 1.21861 0.94578 0.98238 1.02138 1.20296 0.94371 0.89184 0.78845 0.97727 1.21344 0.90719 1.39859 1.06813 0.91757 1.25780 1.04120 0.93878 0.94397 1.70011 1.37401 1.37997 1.09848 0.85246 0.77880 0.78005 0.78676 1.19794 1.20067 1.18743 1.86464 1.36396 1.63036 1.42267 1.24432 0.79285 0.75987 0.91202 1.90525 1.55309 1.59371 1.37531 1.21211 0.96846 0.98709 0.92471 0.86535 1.21808 0.97964 0.96896 1.03085 1.21022 0.91418 0.97136 0.99035 1.22438 0.95852 0.98704 1.03036 1.22527 0.95626 0.96330 0.86431 1.87881 1.51577 1.50034 1.42522 1.22778 0.89169 0.88741 1.01399 1.22287 0.97733 1.01608 0.96425 0.92230 0.94557 0.94215 0.93802 0.89735 0.92092 0.87553 0.92954 0.92140 0.91665 0.91551 0.90901 0.93300 0.88270 0.92901 0.86649 0.88179 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.57 71.98 0.62 -4.97 16 2 C -0.13 -6.59 5.49 30.59 0.17 -6.43 16 3 C 0.23 12.34 2.25 29.85 0.07 12.41 16 4 H 0.00 0.30 7.16 -2.39 -0.02 0.29 16 5 C -0.55 -31.31 8.90 25.60 0.23 -31.08 16 6 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -52.52 11.29 21.45 0.24 -52.28 16 9 Si 0.98 42.93 29.54 68.60 2.03 44.95 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 O -0.37 -17.38 9.71 -51.34 -0.50 -17.88 16 14 C 0.45 18.04 5.43 71.24 0.39 18.43 16 15 O -0.54 -24.14 10.83 21.96 0.24 -23.90 16 16 C -0.07 -2.05 2.42 -11.54 -0.03 -2.07 16 17 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 18 C -0.14 -3.30 8.78 71.98 0.63 -2.67 16 19 C -0.07 -1.66 1.49 -10.67 -0.02 -1.67 16 20 C -0.16 -4.39 5.06 30.69 0.16 -4.23 16 21 C 0.07 1.59 6.84 72.02 0.49 2.08 16 22 O -0.40 -9.27 10.77 -148.98 -1.60 -10.88 16 23 C 0.06 0.95 6.84 72.01 0.49 1.44 16 24 C -0.14 -2.44 4.98 30.69 0.15 -2.29 16 25 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.04 1.68 7.80 -2.39 -0.02 1.66 16 27 H 0.04 1.65 6.06 -2.39 -0.01 1.63 16 28 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 4.69 5.95 -2.39 -0.01 4.68 16 30 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.11 1.65 6.51 -2.39 -0.02 1.63 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.59 8.11 -2.39 -0.02 1.57 16 34 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.45 5.63 -2.39 -0.01 2.43 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.27 6.62 -2.39 -0.02 1.25 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.86 325.28 5.18 -60.67 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.99 Total: 18.92 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.80 Total: -19.61 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.24 Total: -52.28 kcal Atomic # 8 Polarization: -50.79 SS G_CDS: -1.86 Total: -52.65 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.86 5.18 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188095513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.366 kcal (2) G-P(sol) polarization free energy of solvation -65.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds