Wall clock time and date at job start Mon Mar 30 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37877 * 119.99922 * 65.62450 * 5 3 2 8 8 N 1.31513 * 119.99770 * 195.86280 * 7 5 3 9 9 Si 1.86796 * 120.00053 * 15.87134 * 7 5 3 10 10 H 1.48504 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46985 * 299.99568 * 9 7 5 12 12 H 1.48498 * 109.47281 * 59.99897 * 9 7 5 13 13 O 1.45196 * 109.47119 * 64.53536 * 3 2 1 14 14 C 1.34224 * 117.00521 * 269.99731 * 13 3 2 15 15 O 1.20826 * 119.99741 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47522 * 60.00187 * 16 14 13 18 18 C 1.52997 * 109.47418 * 300.00139 * 16 14 13 19 19 C 1.53005 * 109.47444 * 180.02562 * 16 14 13 20 20 C 1.53182 * 109.54366 * 299.82663 * 19 16 14 21 21 C 1.53102 * 109.15846 * 183.23819 * 20 19 16 22 22 O 1.42908 * 109.48581 * 57.46985 * 21 20 19 23 23 C 1.42897 * 114.10050 * 298.89267 * 22 21 20 24 24 C 1.53088 * 109.41979 * 61.15391 * 23 22 21 25 25 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 26 26 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 27 27 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 29 29 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 30 30 H 0.97008 * 120.00172 * 354.88311 * 8 7 5 31 31 H 1.09001 * 109.47786 * 180.02562 * 18 16 14 32 32 H 1.08997 * 109.47147 * 300.00164 * 18 16 14 33 33 H 1.09001 * 109.47160 * 59.99729 * 18 16 14 34 34 H 1.09006 * 109.53998 * 60.00053 * 19 16 14 35 35 H 1.09009 * 109.51698 * 303.05453 * 20 19 16 36 36 H 1.09000 * 109.52225 * 63.24112 * 20 19 16 37 37 H 1.08993 * 109.40486 * 297.49315 * 21 20 19 38 38 H 1.08998 * 109.48440 * 177.49990 * 21 20 19 39 39 H 1.09001 * 109.47836 * 301.17462 * 23 22 21 40 40 H 1.09000 * 109.48607 * 181.14114 * 23 22 21 41 41 H 1.08998 * 109.52568 * 182.48697 * 24 23 22 42 42 H 1.09002 * 109.57143 * 62.32964 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9808 -1.2611 8 7 5.4304 0.6869 -1.2557 9 14 3.1488 0.7710 -2.8249 10 1 4.0271 0.2636 -3.9095 11 1 2.0496 -0.1978 -2.5834 12 1 2.5750 2.0809 -3.2252 13 8 1.6463 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2213 2.7376 0.2448 16 6 -0.0122 3.4282 2.4878 17 1 0.7025 4.2032 2.7646 18 6 -0.1318 2.4142 3.6272 19 6 -1.3790 4.0643 2.2264 20 6 -1.2610 5.0831 1.0886 21 6 -2.6136 5.7721 0.8887 22 8 -3.0187 6.3909 2.1115 23 6 -3.1916 5.4788 3.1978 24 6 -1.8619 4.7796 3.4920 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9657 0.8655 -0.4666 31 1 -0.4760 2.9200 4.5293 32 1 -0.8466 1.6393 3.3504 33 1 0.8417 1.9606 3.8135 34 1 -2.0946 3.2900 1.9498 35 1 -0.5080 5.8288 1.3441 36 1 -0.9718 4.5718 0.1704 37 1 -3.3567 5.0319 0.5924 38 1 -2.5242 6.5296 0.1101 39 1 -3.9423 4.7347 2.9316 40 1 -3.5187 6.0249 4.0826 41 1 -2.0020 4.0515 4.2909 42 1 -1.1209 5.5181 3.7981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188095538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:36 Heat of formation + Delta-G solvation = -160.091313 kcal Electronic energy + Delta-G solvation = -22221.883663 eV Core-core repulsion = 18973.207762 eV Total energy + Delta-G solvation = -3248.675901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41477 -39.10213 -36.42933 -35.06968 -33.57899 -31.93232 -31.27531 -30.94285 -27.55573 -25.67497 -24.07674 -23.15967 -22.39724 -20.87395 -20.03388 -19.37058 -17.78238 -17.01474 -16.22399 -16.06878 -15.87324 -15.62943 -14.82279 -14.21365 -14.17347 -13.60511 -13.43808 -13.29896 -12.95852 -12.81783 -12.49595 -12.24110 -12.03315 -11.81098 -11.66733 -11.54576 -11.33970 -11.24194 -10.96662 -10.82123 -10.63840 -10.54493 -10.29887 -10.01084 -9.77865 -9.64802 -9.58819 -9.29266 -8.85800 -8.39878 -6.65581 -4.26699 2.84537 3.29094 3.36958 3.45907 3.54732 3.80699 4.34241 4.51482 4.69695 4.73517 4.93883 5.08160 5.12461 5.17413 5.21958 5.29730 5.41968 5.46695 5.60090 5.64616 5.74261 5.80930 5.83916 5.87790 5.90080 5.95757 5.97765 6.06100 6.21785 6.29816 6.34674 6.46101 6.60641 6.76534 6.83104 7.11627 7.18040 7.40617 7.82388 8.22763 8.50048 8.83241 9.41620 10.77191 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.004953 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.158366 B = 5652.142593 C = 5899.099463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.201 3.799 4 H 0.037 0.963 5 C -0.606 4.606 6 H 0.067 0.933 7 C 0.039 3.961 8 N -0.895 5.895 9 Si 1.037 2.963 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.279 1.279 13 O -0.342 6.342 14 C 0.456 3.544 15 O -0.517 6.517 16 C -0.082 4.082 17 H 0.102 0.898 18 C -0.144 4.144 19 C -0.070 4.070 20 C -0.165 4.165 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.063 3.937 24 C -0.152 4.152 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.271 0.729 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.620 6.066 8.571 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.147 3.853 4 H 0.055 0.945 5 C -0.644 4.644 6 H 0.086 0.914 7 C -0.167 4.167 8 N -0.528 5.528 9 Si 0.864 3.136 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.205 1.205 13 O -0.258 6.258 14 C 0.299 3.701 15 O -0.408 6.408 16 C -0.101 4.101 17 H 0.120 0.880 18 C -0.201 4.201 19 C -0.089 4.089 20 C -0.202 4.202 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.014 4.014 24 C -0.190 4.190 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.688 5.692 6.703 17.984 hybrid contribution 0.088 0.186 1.519 1.533 sum -15.600 5.878 8.222 18.588 Atomic orbital electron populations 1.21898 0.97451 0.99741 1.01425 1.22437 0.93777 0.99479 1.02925 1.20894 0.96134 0.88020 0.80249 0.94491 1.21948 0.88750 1.49111 1.04581 0.91436 1.25655 0.97384 0.92627 1.01022 1.70864 1.07238 1.40788 1.33906 0.84175 0.75598 0.77764 0.76064 1.20456 1.19515 1.20473 1.86534 1.34299 1.62142 1.42808 1.23369 0.80489 0.76725 0.89481 1.90514 1.56016 1.58546 1.35692 1.21048 0.97951 0.98506 0.92606 0.87951 1.21788 1.03412 0.98247 0.96702 1.21025 0.95317 0.97416 0.95107 1.22521 0.98027 0.98422 1.01252 1.22580 0.95045 0.97384 0.86252 1.87900 1.88693 1.34562 1.19513 1.22533 0.95830 0.92933 0.90137 1.22311 0.98508 1.00244 0.97901 0.93980 0.92690 0.94159 0.90340 0.92076 0.91847 0.91356 0.92303 0.90942 0.90339 0.91589 0.87875 0.93247 0.88997 0.93341 0.89078 0.90499 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.56 37.16 0.32 -2.56 16 2 C -0.15 -3.35 5.32 -26.73 -0.14 -3.49 16 3 C 0.20 5.00 1.84 -27.88 -0.05 4.95 16 4 H 0.04 0.96 5.84 -51.93 -0.30 0.66 16 5 C -0.61 -17.26 9.17 -34.44 -0.32 -17.57 16 6 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 7 C 0.04 1.12 5.33 -17.82 -0.09 1.03 16 8 N -0.89 -26.94 13.70 55.43 0.76 -26.19 16 9 Si 1.04 24.91 26.27 -169.99 -4.47 20.45 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -5.95 5.62 56.52 0.32 -5.64 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 O -0.34 -7.75 9.70 -39.24 -0.38 -8.13 16 14 C 0.46 8.67 5.41 36.00 0.19 8.86 16 15 O -0.52 -10.51 10.83 -18.75 -0.20 -10.72 16 16 C -0.08 -1.15 2.42 -91.77 -0.22 -1.37 16 17 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.14 -1.72 8.78 37.16 0.33 -1.39 16 19 C -0.07 -0.87 1.49 -90.43 -0.13 -1.00 16 20 C -0.16 -2.19 5.06 -26.58 -0.13 -2.33 16 21 C 0.06 0.75 6.84 37.21 0.25 1.01 16 22 O -0.39 -4.76 10.77 -35.23 -0.38 -5.13 16 23 C 0.06 0.60 6.84 37.20 0.25 0.86 16 24 C -0.15 -1.48 4.98 -26.59 -0.13 -1.61 16 25 H 0.04 0.79 6.07 -51.93 -0.31 0.48 16 26 H 0.05 1.09 7.77 -51.93 -0.40 0.69 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.82 4.68 -51.93 -0.24 1.57 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.27 8.11 8.73 -40.82 -0.36 7.76 16 31 H 0.07 0.62 6.51 -51.93 -0.34 0.29 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.95 8.11 -51.93 -0.42 0.52 16 34 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 36 H 0.10 1.63 5.63 -51.93 -0.29 1.33 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.62 6.62 -51.93 -0.34 0.28 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -30.82 320.69 -6.69 -37.50 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.97 Total: 2.00 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 0.12 Total: -14.62 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.76 Total: -26.19 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.96 Total: -23.98 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.82 -6.69 -37.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188095538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.590 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds