Wall clock time and date at job start Mon Mar 30 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46745 * 2 1 4 4 H 1.09005 * 109.47252 * 304.53562 * 3 2 1 5 5 C 1.50704 * 109.47026 * 184.53849 * 3 2 1 6 6 H 1.07998 * 119.99867 * 245.63052 * 5 3 2 7 7 C 1.37877 * 119.99922 * 65.62450 * 5 3 2 8 8 N 1.31513 * 119.99770 * 195.86280 * 7 5 3 9 9 Si 1.86796 * 120.00053 * 15.87134 * 7 5 3 10 10 H 1.48504 * 109.46786 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.46985 * 299.99568 * 9 7 5 12 12 H 1.48498 * 109.47281 * 59.99897 * 9 7 5 13 13 O 1.45196 * 109.47119 * 64.53536 * 3 2 1 14 14 C 1.34224 * 117.00521 * 269.99731 * 13 3 2 15 15 O 1.20826 * 119.99741 * 0.02562 * 14 13 3 16 16 C 1.50693 * 120.00371 * 179.97438 * 14 13 3 17 17 H 1.09003 * 109.47522 * 60.00187 * 16 14 13 18 18 C 1.52997 * 109.47418 * 300.00139 * 16 14 13 19 19 C 1.53005 * 109.47444 * 180.02562 * 16 14 13 20 20 C 1.53182 * 109.54366 * 299.82663 * 19 16 14 21 21 C 1.53102 * 109.15846 * 183.23819 * 20 19 16 22 22 O 1.42908 * 109.48581 * 57.46985 * 21 20 19 23 23 C 1.42897 * 114.10050 * 298.89267 * 22 21 20 24 24 C 1.53088 * 109.41979 * 61.15391 * 23 22 21 25 25 H 1.08996 * 109.47613 * 299.99881 * 1 2 3 26 26 H 1.09005 * 109.47568 * 60.00070 * 1 2 3 27 27 H 1.09005 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46997 * 240.00776 * 2 1 3 29 29 H 1.08996 * 109.47180 * 120.00345 * 2 1 3 30 30 H 0.97008 * 120.00172 * 354.88311 * 8 7 5 31 31 H 1.09001 * 109.47786 * 180.02562 * 18 16 14 32 32 H 1.08997 * 109.47147 * 300.00164 * 18 16 14 33 33 H 1.09001 * 109.47160 * 59.99729 * 18 16 14 34 34 H 1.09006 * 109.53998 * 60.00053 * 19 16 14 35 35 H 1.09009 * 109.51698 * 303.05453 * 20 19 16 36 36 H 1.09000 * 109.52225 * 63.24112 * 20 19 16 37 37 H 1.08993 * 109.40486 * 297.49315 * 21 20 19 38 38 H 1.08998 * 109.48440 * 177.49990 * 21 20 19 39 39 H 1.09001 * 109.47836 * 301.17462 * 23 22 21 40 40 H 1.09000 * 109.48607 * 181.14114 * 23 22 21 41 41 H 1.08998 * 109.52568 * 182.48697 * 24 23 22 42 42 H 1.09002 * 109.57143 * 62.32964 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6117 1.9793 -0.8466 5 6 3.5427 1.4441 -0.1124 6 1 4.1451 1.8080 0.7068 7 6 4.1486 0.9808 -1.2611 8 7 5.4304 0.6869 -1.2557 9 14 3.1488 0.7710 -2.8249 10 1 4.0271 0.2636 -3.9095 11 1 2.0496 -0.1978 -2.5834 12 1 2.5750 2.0809 -3.2252 13 8 1.6463 2.0950 1.2359 14 6 0.4631 2.7288 1.2405 15 8 -0.2213 2.7376 0.2448 16 6 -0.0122 3.4282 2.4878 17 1 0.7025 4.2032 2.7646 18 6 -0.1318 2.4142 3.6272 19 6 -1.3790 4.0643 2.2264 20 6 -1.2610 5.0831 1.0886 21 6 -2.6136 5.7721 0.8887 22 8 -3.0187 6.3909 2.1115 23 6 -3.1916 5.4788 3.1978 24 6 -1.8619 4.7796 3.4920 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9657 0.8655 -0.4666 31 1 -0.4760 2.9200 4.5293 32 1 -0.8466 1.6393 3.3504 33 1 0.8417 1.9606 3.8135 34 1 -2.0946 3.2900 1.9498 35 1 -0.5080 5.8288 1.3441 36 1 -0.9718 4.5718 0.1704 37 1 -3.3567 5.0319 0.5924 38 1 -2.5242 6.5296 0.1101 39 1 -3.9423 4.7347 2.9316 40 1 -3.5187 6.0249 4.0826 41 1 -2.0020 4.0515 4.2909 42 1 -1.1209 5.5181 3.7981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188095538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:35 Heat of formation + Delta-G solvation = -178.891948 kcal Electronic energy + Delta-G solvation = -22222.698920 eV Core-core repulsion = 18973.207762 eV Total energy + Delta-G solvation = -3249.491157 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.166 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83101 -40.21403 -37.96622 -36.28656 -35.54197 -33.88430 -32.27467 -31.83950 -29.48411 -26.67758 -25.27665 -24.42502 -24.00848 -22.34994 -21.29042 -20.80733 -19.86368 -18.60928 -17.39629 -17.28088 -17.13033 -16.85239 -15.96208 -15.70572 -15.20859 -15.11331 -14.88230 -14.67336 -14.59543 -14.23888 -14.13588 -13.58190 -13.30346 -13.06911 -12.99745 -12.73425 -12.68353 -12.52995 -12.40950 -12.26771 -11.92863 -11.84988 -11.69889 -11.53230 -11.44390 -11.18190 -10.90991 -10.81592 -10.59929 -10.42513 -8.95371 -6.57954 1.33075 1.36931 1.43735 1.62671 2.00308 2.33039 2.88711 2.99175 3.49124 3.68704 3.72889 4.03321 4.08422 4.15853 4.21096 4.22849 4.24844 4.34321 4.39604 4.40069 4.57560 4.61679 4.73022 4.76892 4.85318 4.87998 4.92279 4.97513 4.99996 5.05156 5.09347 5.10426 5.21766 5.30631 5.38587 5.39940 5.51697 5.84355 5.99648 6.28421 6.37990 6.96019 7.21070 8.46517 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028795 B = 0.004953 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.158366 B = 5652.142593 C = 5899.099463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.028 0.972 5 C -0.617 4.617 6 H 0.028 0.972 7 C -0.003 4.003 8 N -0.920 5.920 9 Si 1.071 2.929 10 H -0.274 1.274 11 H -0.236 1.236 12 H -0.270 1.270 13 O -0.361 6.361 14 C 0.448 3.552 15 O -0.530 6.530 16 C -0.076 4.076 17 H 0.109 0.891 18 C -0.140 4.140 19 C -0.065 4.065 20 C -0.165 4.165 21 C 0.068 3.932 22 O -0.403 6.403 23 C 0.056 3.944 24 C -0.145 4.145 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.258 0.742 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.447 6.040 9.423 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.046 0.954 5 C -0.655 4.655 6 H 0.047 0.953 7 C -0.203 4.203 8 N -0.555 5.555 9 Si 0.891 3.109 10 H -0.199 1.199 11 H -0.160 1.160 12 H -0.196 1.196 13 O -0.277 6.277 14 C 0.293 3.707 15 O -0.420 6.420 16 C -0.095 4.095 17 H 0.127 0.873 18 C -0.197 4.197 19 C -0.084 4.084 20 C -0.203 4.203 21 C -0.009 4.009 22 O -0.322 6.322 23 C -0.020 4.020 24 C -0.182 4.182 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.533 5.671 7.588 20.813 hybrid contribution 0.989 0.281 1.349 1.696 sum -17.543 5.952 8.937 20.568 Atomic orbital electron populations 1.21795 0.94672 1.01718 1.01308 1.22316 0.96184 0.97310 1.02501 1.20604 0.93703 0.89739 0.81106 0.95450 1.22111 0.91004 1.48795 1.03577 0.95347 1.27010 0.97523 0.91751 1.04006 1.70974 1.08255 1.42811 1.33420 0.83779 0.75476 0.79068 0.72615 1.19884 1.16037 1.19558 1.86519 1.36619 1.63026 1.41554 1.24427 0.79089 0.76058 0.91123 1.90508 1.55996 1.58810 1.36701 1.21227 0.98874 0.98702 0.90696 0.87294 1.21812 1.02846 0.97960 0.97102 1.21026 0.94025 0.97095 0.96259 1.22460 0.98918 0.98483 1.00424 1.22529 0.94105 0.97563 0.86661 1.87887 1.88633 1.35655 1.20036 1.22774 0.95923 0.93194 0.90152 1.22295 0.98497 1.00557 0.96850 0.93759 0.93142 0.91098 0.90857 0.92430 0.93269 0.87750 0.92054 0.92459 0.90728 0.92123 0.90721 0.92762 0.88431 0.92489 0.86847 0.88018 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.56 71.98 0.62 -4.42 16 2 C -0.15 -6.42 5.32 30.59 0.16 -6.25 16 3 C 0.20 10.19 1.84 29.85 0.05 10.24 16 4 H 0.03 1.44 5.84 -2.38 -0.01 1.42 16 5 C -0.62 -36.33 9.17 25.60 0.23 -36.09 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.00 -0.15 5.33 84.65 0.45 0.30 16 8 N -0.92 -57.00 13.70 21.45 0.29 -56.70 16 9 Si 1.07 49.80 26.27 68.60 1.80 51.60 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.24 -9.71 5.62 99.48 0.56 -9.15 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 O -0.36 -16.52 9.70 -51.36 -0.50 -17.02 16 14 C 0.45 16.85 5.41 71.23 0.39 17.24 16 15 O -0.53 -21.30 10.83 21.97 0.24 -21.06 16 16 C -0.08 -2.01 2.42 -11.54 -0.03 -2.03 16 17 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.14 -2.98 8.78 71.98 0.63 -2.35 16 19 C -0.07 -1.48 1.49 -10.67 -0.02 -1.50 16 20 C -0.17 -4.25 5.06 30.69 0.16 -4.10 16 21 C 0.07 1.50 6.84 72.02 0.49 1.99 16 22 O -0.40 -8.94 10.77 -148.98 -1.60 -10.54 16 23 C 0.06 0.89 6.84 72.01 0.49 1.38 16 24 C -0.14 -2.30 4.98 30.68 0.15 -2.15 16 25 H 0.04 1.57 6.07 -2.39 -0.01 1.56 16 26 H 0.05 1.88 7.77 -2.38 -0.02 1.87 16 27 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.07 3.28 4.68 -2.39 -0.01 3.27 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.26 16.16 8.73 -92.70 -0.81 15.35 16 31 H 0.10 1.47 6.51 -2.39 -0.02 1.46 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16 34 H 0.07 1.77 8.10 -2.38 -0.02 1.75 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.57 16 36 H 0.07 2.36 5.63 -2.39 -0.01 2.35 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.15 6.62 -2.39 -0.02 1.13 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -68.64 320.69 4.82 -63.82 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.80 Total: 17.63 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 3.79 Total: -27.73 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 0.29 Total: -56.70 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -1.86 Total: -48.62 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 1.80 Total: 51.60 kcal Total: -68.64 4.82 -63.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188095538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.070 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds